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Biological evaluation of 2-methylpyrimidine derivatives as active pan Bcr-Abl inhibitors

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Abstract

We designed a series of 2-methylpyrimidine derivatives as new BCR-ABL inhibitors using scaffold-hopping strategy. These synthetic compounds exhibited significant inhibition against a broad spectrum of Bcr-Abl mutants including the gatekeeper T315I mutant. Compound 7u showed very potent kinase inhibitory activities against Bcr-Abl WT, Bcr-Abl E255K, Bcr-Abl Q252H, Bcr-Abl G250E and Bcr-Abl T315I, with IC50 values of 0.13 nM, 0.17 nM, 0.24 nM, 0.19 nM and 0.65 μM, respectively. This compound also displayed anti-proliferation activity against K562 cell line with an IC50 value of 1.1 nM, thus representing a new lead for further optimization.

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References

  1. Heisterkamp N, Stam K, Groffen J, de Klein, A, Grosveld G. Structural organization of the bcr gene and its role in the Ph8 translocation. Nature, 1985, 315: 758–761

    Article  CAS  Google Scholar 

  2. Goldman JM, Melo JV. Chronic myeloid leukemia-advances in biology and new approaches to treatment. New Engl J Med, 2003, 349: 1451–1464

    Article  CAS  Google Scholar 

  3. Melo JV. The diversity of BCR-ABL fusion proteins and their relationship to leukemia phenotype. Blood, 1996, 88: 2375–2384

    CAS  Google Scholar 

  4. Cortez D, Kadlec L, Pendergast AM. Structural and signaling requirements for BCR-ABL-mediated transformation and inhibition of apoptosis. Mol Cell Biol, 1995, 15: 5531–5541

    CAS  Google Scholar 

  5. Goga A, McLaughlin J, Afar DEH, Saffran DC, Witte ON. Alternative signals to RAS for hematopoietic transformation by the BCR-ABL oncogene. Cell, 1995, 82: 981–988

    Article  CAS  Google Scholar 

  6. Carlesso LN, Frank DA, Griffin JD. Tyrosyl phosphorylation and DNA binding activity of signal transducers and activators of transcription (STAT) proteins in hematopoietic cell lines transformed by Bcr/Abl. J Exp Med, 1996, 183: 811–820

    Article  CAS  Google Scholar 

  7. Shuai K, Halpner J, ten Hoeve J, Rao X, Sawyers CL. Constitutive activation of STAT5 by BCR-ABL oncogene in chronic myelogenous leukemia. Oncogene, 1996, 13: 247–254

    CAS  Google Scholar 

  8. Sattler M, Salgia R, Okuda K, Uemura N, Durstin M, Pisick E, Xu G, Li JL, Prasad KV, Griffin JD. The protooncogene product p120CBL and the adaptor proteins CRKL and c-CRK link c-ABL, p190BCR/ABL and p210BCR/ABL to the phosphatidylinositol-38 kinase pathway. Oncogene, 1996, 12: 839–846

    CAS  Google Scholar 

  9. Druker BJ, Tamura S, Buchdunger E, Ohno S, Segal GM, Fanning S, Zimmermann J, Lydon NB. Effects of a selec-tive inhibitor of the Abl tyrosine kinase on the growth of Bcr-Abl positive cells. Nature Med, 1996, 2: 561–566

    Article  CAS  Google Scholar 

  10. Druker BJ, Guilhot F, O’Brien SG, Gathmann I, Kantarjian H, Gattermann N, Deininger MW, Silver RT, Goldman JM, Stone RM, Cervantes F, Hochhaus A, Powell BL, Gabrilove JL, Rousselot P, Reiffers J, Cornelissen JJ, Hughes T, Agis H, Fischer T, Verhoef G, Shepherd J, Saglio G, Gratwohl A, Nielsen JL, Radich JP, Simonsson B, Taylor K, Baccarani M, So C, Letvak L, Larson RA. Five-year follow-up of patients receiving imatinib for chronic myeloid leukemia. N Engl J Med, 2006, 355: 2408–2417

    Article  CAS  Google Scholar 

  11. O’Hare T, Eide CA, Deininger MW. BCR-ABL kinase domain mutations, drug resistance, and the road to a cure for chronic-myeloid leukemia. Blood, 2007, 110: 2242–2249

    Article  Google Scholar 

  12. Melo JV, Chuah C. Resistance to imatinib mesylate in chronic myeloid leukaemia. Cancer Lett, 2007, 249: 121–132

    Article  CAS  Google Scholar 

  13. Weisberg E, Manley PW, Cowan-Jacob SW, Hochhaus A, Griffin JD. Second generation inhibitors of BCR-ABL for the treatment of imatinib-resistant chronic myeloid leukaemia. Nat Rev Cancer, 2007, 7: 345–356

    Article  CAS  Google Scholar 

  14. Quintas-Cardama A, Kantarjian H, Cortes J. Flying under the radar: The new wave of BCR-ABL inhibitors. Nat Rev Drug Discov, 2007, 6: 834–848

    Article  CAS  Google Scholar 

  15. Weisberg E, Manley PW, Breitenstein W, Brueggen J, Cowan-Jacob SW, Ray A, Huntly B, Fabbro D, Fendrich G, Hall-Meyers E, Kung AL, Mestan J, Daley GQ, Callahan L, Catley L, Cavazza C, Mohammed A, Neuberg D, Wright RD, Gilliland DG, Griffin JD. Characterization of AMN107, a selective inhibitor of native andmutant Bcr-Abl. Cancer Cell, 2005, 7: 129–141

    Article  CAS  Google Scholar 

  16. Kimura S, Naito H, Segawa H, Kuroda J, Yuasa T, Sato K, Yokota A, Kamitsuji Y, Kawata E, Ashihara E, Nakaya Y, Naruoka H, Wakayama T, Nasu K, Asaki T, Niwa T, Hirabayashi K, Maekawa T. NS-187, a potent and selective dual Bcr-Abl/Lyn tyrosine kinase inhibitor, is a novel agent for imatinib resistant leukemia. Blood, 2005, 106: 3948–3954

    Article  CAS  Google Scholar 

  17. Shah NP, Tran C, Lee FY, Chen P, Norris D, Sawyers CL. Overriding imatinib resistance with a novel Abl kinase inhibitor. Science, 2004, 305: 399–401

    Article  CAS  Google Scholar 

  18. Lombardo LJ, Lee FY, Chen P, Norris D, Barrish JC, Behnia K, Castaneda S, Cornelius LAM, Das J, Doweyko AM, Fairchild C, Hunt JT, Inigo I, Johnston K, Kan D, Pang S, Peterson R, Pitt S, Schieven GL, Schmidt RJ, Tokarski J, Wen ML, Wityak J, Borzilleri RM. Discovery of N-(2-chloro-6-methyl-phenyl)-2-(6-(4-(2-hydroxyethyl)-piperazin-1-yl)-2-methylpyrimidin-4-ylamino)thiazole-5-carboxamide (BMS-354825), a dual Src/Abl kinase inhibitor with potent antitumor activity in preclinical assays. J Med Chem, 2004, 47: 6658–6661

    Article  CAS  Google Scholar 

  19. Boschelli DH, Ye F, Wang YD, Dutia M, Johnson SL, Wu B, Miller K, Powell DW, Yaczko D, Young M, Tischler M, Arndt K, Discafani C, Etienne C, Gibbons J, Grod J, Lucas J, Weber JM, Boschelli F. Optimization of 4-phenylamino-3-quinolinecarbonitriles as potent inhibitors of Src kinase activity. J Med Chem, 2001, 44: 3965–3977

    Article  CAS  Google Scholar 

  20. Puttini M, Coluccia AM, Boschelli F, Cleris L, Marchesi E, Donella-Deana A, Ahmed S, Redaelli S, Piazza R, Magistroni V, Andreoni F, Scapozza L, Formelli F, Gambacorti-Passerini C. In vitro and in vivo activity of SKI-606, a novel Src-ABL inhibitor, against imatinib-resistant BCRABL neoplastic cells. Cancer Res, 2006, 66: 11314–11322

    Article  CAS  Google Scholar 

  21. O’Hare T, Walters DK, Stoffregen EP, Jia T, Manley PW, Mestan J, Cowan-Jacob SW, Lee FY, Heinrich MC, Deininger MW, Druker BJ. In vitro activity of BCR-ABL inhibitors AMN107 and BMS-354825 against clinically relevant imatinib-resistant ABL kinase domain mutants. Cancer Res, 2005, 65: 4500–4505

    Article  Google Scholar 

  22. Deguchi Y, Kimura S, Ashihara E, Niwa T, Hodohara K, Fujiyama Y, Maekawa T. Comparison of imatinib, dasatinib, nilotinib and INNO-406 in imatinib-resistant cell lines. Leuk Res, 2008, 32: 980–983

    Article  CAS  Google Scholar 

  23. Redaelli S, Piazza R, Rostagno R, Magistroni V, Perini P, Marega M, Gambacorti-Passerini C, Boschelli F. Activity of bosutinib, dasatinib, and nilotinib against 18 imatinib resistant BCR/ABL mutants. J Clin Oncol, 2009, 27: 46–471

    Article  Google Scholar 

  24. Choi HG, Ren P, Adrian F, Sun F, Lee HS, Wang X, Ding Q, Zhang G, Xie Y, Zhang J, Liu Y, Tuntland T, Warmuth M, Manley PW, Mestan J, Gray NS, Sim T. A type-II kinase inhibitor capable of inhibiting the T315I “gatekeeper” mutant of Bcr-Abl. J Med Chem, 2010, 53: 5439–5448

    Article  CAS  Google Scholar 

  25. Huang WS, Metcalf CA, Sundaramoorthi R, Wang Y, Zou D, Thomas RM, Zhu X, Cai L, Wen D, Liu S, Romero J, Qi J, Chen I, Banda G, Lentini SP, Das S, Xu Q, Keats J, Wang F, Wardwell S, Ning Y, Snodgrass JT, Broudy MI, Russian K, Zhou T, Commodore L, Narasimhan NI, Mohemmad QK, Iuliucci J, Rivera VM, Dalgarno DC, Sawyer TK, Clackson T, Shakespeare WC. Discovery of 3-[2-(imid-azo[1,2-b]pyridazin-3-yl)ethynyl]-4-methyl-N-{4-[(4-methylpiperazin-1-yl)-methyl]-3-(trifluoromethyl)phenyl}benzamide (AP24534), a potent, orally active pan-inhibitor of breakpoint cluster regionabelson (BCR-ABL) kinase including the T315I gatekeeper mutant. J Med Chem, 2010, 53: 4701–4719

    Article  CAS  Google Scholar 

  26. O’Hare T, Shakespeare WC, Zhu XT, Eide CA, Rivera VM, Wang F, Adrian LT, Zhou TJ, Huang WS, Xu QH, Metcalf C, Tyner JW, Loriaux MM, Corbin AS, Wardwell S, Ning YY, Keats JA, Wang YH, Sundaramoorthi R, Thomas M, Zhou D, Snodgrass J, Commodore L, Sawyer TK, Dalgarno DC, Deininger MWN, Druker BJ, Clackson T. AP24534, a Pan-BCR-ABL inhibitor for chronic myeloid leukemia, potently inhibits the T315I mutant and overcomes mutation-based resistance. Cancer Cell, 2009, 16: 401–412

    Article  Google Scholar 

  27. Eide CA, Adrian LT, Tyner JW, Mac Partlin M, Anderson DJ, Wise SC, Smith BD, Petillo PA, Flynn DL, Deininger MW, O’Hare T, Druker BJ. The ABL switch control inhibitor DCC-2036 is active against the chronic myeloid leukemia mutant BCR-ABLT315I and exhibits a narrow resistance profile. Cancer Res, 2011, 71: 3189–3195

    Article  CAS  Google Scholar 

  28. Deng X, Okram B, Ding Q, Zhang J, Choi Y, Adrian FJ, Wojciechowski A, Zhang G, Che J, Bursulaya B, Cowan-Jacob SW, Rummel G, Sim T, Gray NS. Expanding the diversity of allosteric Bcr-Abl inhibitors. J Med Chem, 2010, 53: 6934–6946

    Article  CAS  Google Scholar 

  29. Ren X, Pan X, Zhang Z, Wang D, Lu X, Li Y, Wen D, Long H, Luo J, Feng Y, Zhuang X, Zhang F, Liu J, Leng F, Lang X, Bai Y, She M, Tu Z, Pan J, Ding K. Identification of GZD824 as an orally bioavailable inhibitor that targets phosphorylated and nonphosphorylated breakpoint cluster region-abelson (Bcr-Abl) kinase and overcomes clinically acquired mutation-induced resistance against imatinib. J Med Chem, 2013, 56: 879–894

    Article  CAS  Google Scholar 

  30. O’Hare T, Walters DK, Deininger MW, Druker BJ. AMN107: tightening the grip of imatinib. Cancer Cell, 2005, 7: 117–119

    Article  Google Scholar 

  31. Tokarski JS, Newitt JA, Chang CYJ, Cheng JD, Wittekind M, Kiefer SE, Kish K, Lee FYF, Borzillerri R, Lombardo LJ, Xie D, Zhang Y, Klei HE. The structure of dasatinib (BMS-354825) bound to activated ABL kinase domain elucidates its inhibitory activity against imatinib-resistant ABL mutants. Cancer Research, 2006, 66: 5790–5797

    Article  CAS  Google Scholar 

  32. Wolfgang A, Weber WA. Use of PET for monitoring cancer therapy and for predicting outcome. J Nucl Med, 2005, 46: 983–995

    Google Scholar 

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Correspondence to Zheng Li or Sheng Jiang.

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Zou, D., Qiu, Y., Tu, Z. et al. Biological evaluation of 2-methylpyrimidine derivatives as active pan Bcr-Abl inhibitors. Sci. China Chem. 57, 823–832 (2014). https://doi.org/10.1007/s11426-013-5011-9

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  • DOI: https://doi.org/10.1007/s11426-013-5011-9

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