Abstract
Peptide thioester preparation via intramolecular O-to-S acyl transfer is a recently developed method for protein chemical synthesis through Fmoc chemistry. Theoretical calculations have been carried out to study the mechanism for the formation of thioesters via O-to-S acyl transfer. It is found that the O-to-S acyl transfer occurs via an anionic stepwise mechanism in which the cleavage of the C-O bond is the rate-limiting step. The side reaction of hydrolysis also proceeds through an anionic stepwise process, and its rate-limiting step is the attack of the hydroxide ion on the carbonyl carbon. Increase of the chain length between the ester O atom and the S atom can increase the energy barrier of the O-to-S acyl transfer. On the other hand, substituents at the α-position of the ester can reduce the energy barrier.
Similar content being viewed by others
References
Kent SBH. Total chemical synthesis of proteins. Chem Soc Rev, 2009, 38: 338–351
Dawson PE, Muir TW, Clark-Lewis I, Kent SBH. Synthesis of proteins by native chemical ligation. Science, 1994, 38: 776–779
Johnson ECB, Kent SBH. Insights into the mechanism and catalysis of the native chemical ligation reaction. J Am Chem Soc, 2006, 128: 6640–6646
Ingenito R, Bianchi E, Fattori D, Pessi A. Solid phase synthesis of peptide C-terminal thioesters by Fmoc/t-Bu chemistry. J Am Chem Soc, 1999, 121: 11369–11374
Fang GM, Li YM, Shen F, Huang YC, Li JB, Lin Y, Cui HK, Liu L. Protein chemical synthesis by ligation of peptide hydrazides. Angew Chem Int Ed, 2011, 50: 7645–7649
Chen G, Wan Q, Tan Z, Kan C, Hua Z, Ranganathan K, Danishefsky, SJ. Development of efficient methods for accomplishing cysteine-free peptide and glycopeptide coupling. Angew Chem, Int Ed, 2007, 46: 7383–7387
Hojo H, Murasawa Y, Katayama H, Ohira T, Nakaharaa Y, Nakahara Y. Application of a novel thioesterification reaction to the synthesis of chemokine CCL27 by the modified thioester method. Org Biomol Chem, 2008, 6: 1808–1813
Shen F, Tang S, Liu L. Hexafluoro-2-propanol as a potent cosolvent for chemical ligation of membrane proteins. Sci China Chem 2011, 54: 110–116
Blanco-Canosa JB, Dawson PE. An efficient Fmoc-SPPS approach for the generation of thioester peptide precursors for use in native chemical ligation, Angew Chem Int Ed, 2008, 47: 6851–6855
Tsuda S, Shigenaga A, Bando K, Otaka A. N→S acyl-transfer-mediated synthesis of peptide thioesters using anilide derivatives. Org Lett, 2009, 11: 823–826
Zheng JS, Chang HN, Wang FL, Liu L. Fmoc synthesis of peptide thioesters without post-chain-assembly manipulation. J Am Chem Soc, 2011, 133: 11080–11083
Sharma RK, Tam JP. Tandem thiol switch synthesis of peptide thioesters via N-S acyl shift on thiazolidine. Org Lett, 2011, 13: 5176–5179
Fang GM, Cui HK, Zheng JS, Liu L. Chemoselective ligation of peptide phenyl esters with N-terminal cysteines. ChemBioChem, 2010, 11: 1061–1065
Sharma I, Crich D. Direct Fmoc-chemistry-based solid-phase synthesis of peptidyl thioesters. J Org Chem, 2011, 76: 6518–6524
Shen F, Zhang ZP, Li JB, Lin Y, Liu L. Hydrazine-sensitive thiol protecting group for peptide and protein chemistry. Org Lett, 2011, 13: 568–571
Warren JD, Miller JS, Keding SJ, Danishefsky SJ. Toward fully synthetic glycoproteins by ultimately convergent routes: A solution to a long-standing problem. J Am Chem Soc, 2004, 126: 6576–6578
Zheng JS, Tang S, Guo Y, Chang HN, Liu L. Synthesis of cyclic peptides and cyclic proteins via ligation of peptide hydrazides. ChemBioChem, 2012, 13: 542–546
Botti P, Manganiello S, Gaertner H. Native chemical ligation through in situ O to S acyl shift. Org Lett, 2004, 6: 4861–4864
Chen G, Warren JD, Chen JH, Wu B, Wan Q, Danishefsky SJ. Stud ies related to the relative thermodynamic stability of C-terminal peptidyl esters of O-hydroxy thiophenol: emergence of a doable strategy for non-cysteine ligation applicable to the chemical synthesis of glycopeptides. J Am Chem Soc, 2006, 128: 7460–7462
Zheng JS, Cui HK, Fang GM, Xi WX, Liu L. Chemical protein synthesis by kinetically controlled ligation of peptide O-esters. Chem-BioChem, 2010, 11: 511–515
Kisangau DP, Hosea KM, Lyaruu HVM, Joseph C, Mbwambo ZH, Masimba PJ, Gwandu CB, Bruno LN, Devkota KP, Sewald N. Peptide dithiodiethanol esters for in situ generation of thioesters for use in native ligation. Tetrahedron Lett, 2007, 48: 2105–2107
Zheng JS, Chang HN, Shi J, Liu L. Chemical synthesis of a cyclotide via intramolecular cyclization of peptide O-esters. Sci China Chem, 2012, 55: 64–69
Lin M, Kang GY, Guo YA, Yu ZX. Asymmetric Rh(I)-catalyzed intramolecular [3+2] cycloaddition of 1-yne-vinylcyclopropanes for bicyclo[3.3.0] compounds with a chiral quaternary carbon stereocenter and density functional theory study of the origins of enantioselectivity. J Am Chem Soc, 2012, 134: 398–405
García-Melchor M, Gorelsky SI, Woo TK. Mechanistic analysis of Iridium (III) catalyzed direct C-H arylations: A DFT study. Chem Eur J, 2011, 17: 13847–13853
Yu HZ, Jiang YY, Fu Y, Liu L. Alternative mechanistic explanation for ligand-dependent selectivities in copper-catalyzed N- and O-arylation reactions. J Am Chem Soc, 2010, 132: 18078–18091
Tam JP, Lu YA. Density functional theory study of the mechanism and origins of stereoselectivity in the asymmetric Simmons-Smith cyclopropanation with charette chiral dioxaborolane ligand. J Am Chem Soc, 2011, 133: 9343–9353
Zhang SL, Fu Y, Shang R, Guo, QX, Liu L. Theoretical analysis of factors controlling Pd-catalyzed decarboxylative coupling of carboxylic acids with olefins. J Am Chem Soc, 2010, 132: 638–646
Li WY, Qin S, Su ZS, Yang HQ, Hu CW. Theoretical study on the mechanism of Al(salalen)-catalyzed hydrophosphonylation of aldehydes. Organometallics, 2011, 30: 2095–2104
Li Z, Zhang SL, Fu Y, Guo QX, Liu L. Mechanism of Ni-catalyzed selective C-O bond activation in cross-coupling of aryl esters. J Am Chem Soc, 2009, 131: 8815–8823
Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA, Nakatsuji H, Caricato M, Li X, Hratchian HP, Izmaylov AF, Bloino J, Zheng G, Sonnenberg JL, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Vreven T, Montgomery Jr JA, Peralta JE, Ogliaro F, Bearpark M, Heyd JJ, Brothers E, Kudin KN, Staroverov VN, Kobayashi R, Normand J, Raghavachari K, Rendell A, Burant JC, Iyengar SS, Tomasi J, Cossi M, Rega N, Millam JM, Klene M, Knox JE, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Martin RL, Morokuma K, Zakrzewski VG, Voth GA, Salvador P, Dannenberg JJ, Dapprich S, Daniels AD, Farkas Ö, Foresman JB, Ortiz JV, Cioslowski J, Fox DJ. Gaussian 09, Revision A.02. Gaussian, Inc., Wallingford CT, 2009
Becke AD. Density-functional thermochemistry. III. The role of exact exchange. J Chem Phys, 1993, 98: 5648
Lee C, Yang W, Parr RG. Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Phys Rev B, 1988, 37: 785–789
Cramer CJ, Truhlar DG, Implicit solvation models: equilibria, structure, spectra, and dynamics. Chem Rev, 1999, 99: 2161–2200
Tomasi J, Mennucci B, Cammi R. Quantum mechanical continuum solvation models. Chem Rev, 2005, 105: 2999–3094
Marenich AV, Cramer CJ, Truhlar DG. Universal solvation model based on solute electron density and on a continuum model of the solvent defined by the bulk dielectric constant and atomic surface tensions. J Phys Chem B, 2009, 113: 6378–6396
Zhao Y, Truhlar DG. The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other function. Theor Chem Acc, 2008, 120: 215–241
Wang C, Fu Y, Guo QX, Liu L. First-principles prediction of nucleophilicity parameters for π nucleophiles: implications for mechanistic origin of Mayr’s equation. Chem Eur J, 2010, 16: 2586–2598
Gunaydin H, Houk KN. Molecular dynamics prediction of the mechanism of ester hydrolysis in water. J Am Chem Soc, 2008, 130: 15232–15233
Yambe S, Fukuda T, Ishii M. Role of hydrogen bonds in acidcatalyzed hydrolyses of esters. Thero Chem Acc, 2011, 130: 429–438
Linderoth L, Fristrup P, Hansen M, Melander F, Madsen R, Andresen TL, Peters GH. Mechanistic study of the sPLA(2)-mediated hydrolysis of a thio-ester Pro anticancer ether lipid. J Am Chem Soc, 2009, 131: 12193–12200
Liang X, Montoya A, Haynes BS. Molecular dynamics study of acidcatalyzed hydrolysis of dimethyl ether in aqueous solution. J Phy Chem B, 2011, 115: 8199–8206
Hori K, Ikenaga Y, Arata K, Takahashi T, Kasai K, Noguchi Y, Sumimoto M, Yamamoto H. Theoretical study on the reaction mechanism for the hydrolysis of esters and amides under acidic conditions. Tetrahedron, 2007, 63: 1264–1269
Zhan CG, Landry DW, Ornstein RL. Theoretical studies of fundamental pathways for alkaline hydrolysis of carboxylic acid esters in gas phase. J Am Chem Soc, 2000, 122: 1522–1530
Author information
Authors and Affiliations
Corresponding author
Electronic supplementary material
Rights and permissions
About this article
Cite this article
Wang, C., Guo, QX. Theoretical study on formation of thioesters via O-to-S acyl transfer. Sci. China Chem. 55, 2075–2080 (2012). https://doi.org/10.1007/s11426-012-4711-x
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11426-012-4711-x