Abstract
The DNA binding and cleavage activity of a synthetic polyamide containing dipeptide Ser-His has been investigated by spectroscopic techniques, such as electronic absorbance and circular dichroism (CD) spectropolarimetry, as well as gel electrophoresis. The results show that the molecule has a strong interaction with DNA and can improve DNA-cleavage ability about 100 fold as compared with single dipeptide Ser-His.
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Dervan P B. Molecular recognition of DNA by small molecules. Bioorg & Med Chem, 2001, 9(9): 2215–2235
Rucker V C, Foister S, Melander C, Dervan P B. Sequence specific fluorescence detection of double strand. J Am Chem Soc, 2003, 125(5): 1195–1202
Zimmer C, Wahnert U. Nonintercalating DNA-binding ligands: Specificity of the interaction and their use as tools in biophysical, biochemical and biological investigation of the genetic material. Prog Biophys Mol Biol, 1986, 47(1): 31–112
Burrows C J, Rokita S E. Recognition of guanine structure in nucleic acids by nickel complexes. Acc Chem Res, 1994, 27(10): 295–301
Li Y S, Zhao F, Hatfield S, Wan R, Zhu Q, Li X H, McMills M, Ma Y, Li J, Brown K L, He C, Liu F, Chen X Z. Dipeptide seryl-histidine and related oligopeptides cleave DNA, protein, and a carboxyl ester. Bioorg Med Chem, 2000, 8(12): 2675–2680
Wemmer D E, Dervan P B. Targeting the minor groove of DNA. Curr Opin Struct Biol, 1997, 7(3): 355–361
Ye Y, Niu M Y, Yin Q, Cao L F, Zhao Y F. A synthetic route to N-methylpyrrole containing polyamide/peptide conjugate. J Chem Res-S, 2005, (4): 254–256
Pyle A M, Rehmann J P, Meshoyrer R, Kumar C V, Turro N J, Barton J K. Mixed-ligand complexes of ruthenium (II): Factors governing binding to DNA. J Am Chem Soc, 1989, 111(8): 3051–3058
Wolfe A, Shimer G H, Jr Mechan T. Polycyclic aromatic hydrocarbons physically intercalate into duplex regions of denatured DNA. Biochemistry, 1987, 26(20): 6392–6396
Zhong W Y, Yu J, Huang W L, Ni K Y, Liang Y Q. Spectroscopic studies of interaction of chlorobenzylidine with DNA. Biopolymers, 2001, 62(6): 315–323
Gore M G. Spectrophotometry and Spectrofluorimetry. New York: Oxford University Press, 2000
Reinhardt C G, Krugh T R. A comparative study of ethidium bromide complexes with dinucleotides and DNA: Direct evidence for intercalation and nucleic acid sequence preferencest. Biochemistry, 1978, 17(23): 4845–4854
Lee M, Rhodes A L, Wyatt M D, Forrow S, Hartley J A. GC base sequence recognition by oligoimidazolecarboxamide and C-terminus-modified analogs of distamycin deduced from circular dichroism, proton nuclear magnetic resonance, and methidiumpropylethylenediaminetetraacetate-iron (II) footprinting studies. Biochemistry, 1993, 32(16): 4237–4245
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Supported by the National Natural Science Foundation of China (Grant No. 20572061)
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Zhang, Z., Niu, M., Ju, Y. et al. Studies on the DNA binding and cleavage activity of a synthesized polyamide containing dipeptide Ser-His. Sci. China Ser. B-Chem. 50, 806–811 (2007). https://doi.org/10.1007/s11426-007-0103-z
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DOI: https://doi.org/10.1007/s11426-007-0103-z