Abstract
In the continuing discovery and structure elucidation of natural xanthone dimers, which are still rarely reported in absolute configuration, three new xanthone dimers, eumitrins I–K (1–3) were isolated from the lichen Usnea baileyi, a rich source of natural xanthone dimers. Their structures were elucidated unambiguously by spectroscopic analyses, including high-resolution electrospray ionization mass spectrometry (HRESIMS), 1D and 2D nuclear magnetic resonance spectroscopy (1D and 2D NMR). The absolute configuration of all three compounds was established through DP4 probability and ECD calculation. All compounds revealed weak activity for their enzymatic inhibition against α-glucosidase and tyrosinase, as well as antibacterial activity.
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References
Masters KS, Bräse S (2012) Xanthones from fungi, lichens, and bacteria: the natural products and their synthesis. Chem Rev 112(7):3717–3776. https://doi.org/10.1021/cr100446h
Wezeman T, Bräse S, Masters K-S (2015) Xanthone dimers: a compound family which is both common and privileged. Nat Prod Rep 32(1):6–28. https://doi.org/10.1039/C4NP00050A
Le Pogam P, Boustie J (2016) Xanthones of lichen source: a 2016 update. Molecules 21(3):294–323. https://doi.org/10.3390/molecules21030294
Cai S, King JB, Du L, Powell DR, Cichewicz RH (2014) Bioactive sulfur-containing sulochrin dimers and other metabolites from an Alternaria sp. isolate from a Hawaiian soil sample. J Nat Prod 77(10):2280–2287. https://doi.org/10.1021/np5005449
Kikuchi H, Isobe M, Kurata S, Katou Y, Oshima Y (2012) New dimeric and monomeric chromanones, gonytolides D-G, isolated from the fungus Gonytrichum sp. Tetrahedron 68(31):6218–6223. https://doi.org/10.1016/j.tet.2012.05.064
Ehrlich KC, Lee L, Ciegler A, Palmgren M (1982) Secalonic acid D: natural contaminant of corn dust. Appl Environ Microbiol 44(4):1007–1008. https://doi.org/10.1128/aem.44.4.1007-1008.1982
Tuong TL, Aree T, Do LTM, Nguyen PKP, Wongana P, Chavasiri W (2019) Dimeric tetrahydroxanthones from the lichen Usnea aciculifera. Fitoterapia 137:104194. https://doi.org/10.1016/j.fitote.2019.104194
Nguyen V-K, Nguyen-Si H-V, Devi AP, Poonsukkho P, Sangvichien E, Tran T-N, Yusuke H, Mitsunaga T, Chavasiri W (2021) Eumitrins FH: three new xanthone dimers from the lichen Usnea baileyi and their biological activities. Nat Prod Res. https://doi.org/10.1080/14786419.2021.2023143
Tuong TL, Do LT, Aree T, Wonganan P, Chavasiri W (2020) Tetrahydroxanthone–chromanone heterodimers from lichen Usnea aciculifera and their cytotoxic activity against human cancer cell lines. Fitoterapia 147:104732. https://doi.org/10.1016/j.fitote.2020.104732
Wu G, Yu G, Kurtan T, Mandi A, Peng J, Mo X, Liu M, Li H, Sun X, Li J (2015) Versixanthones A-F, cytotoxic xanthone–chromanone dimers from the marine-derived fungus Aspergillus versicolor HDN1009. J Nat Prod 78(11):2691–2698. https://doi.org/10.1021/acs.jnatprod.5b00636
Yang D-M, Takeda N, Iitaka Y, Sankawa V, Shibata S (1973) The structures of eumitrins A1, A2 and B. Tetrahedron 29(3):519–528. https://doi.org/10.1016/0040-4020(73)80003-1
Nguyen V-K, Genta-Jouve G, Duong T-H, Beniddir MA, Gallard J-F, Ferron S, Boustie J, Mouray E, Grellier P, Chavasiri W (2020) Eumitrins CE: Structurally diverse xanthone dimers from the vietnamese lichen Usnea baileyi. Fitoterapia 141:104449. https://doi.org/10.1016/j.fitote.2019.104449
Li T-X, Yang M-H, Wang Y, Wang X-B, Luo J, Luo J-G, Kong L-Y (2016) Unusual dimeric tetrahydroxanthone derivatives from Aspergillus lentulus and the determination of their axial chiralities. Sci Rep 6:38958. https://doi.org/10.1038/srep38958
Nguyen V-K, Duong T-H, Nguyen KPP, Sangvichien E, Wonganan P, Chavasiri W (2018) Chemical constituents of the lichen Usnea baileyi (Stirt.) Zahlbr. Tetrahedron Lett 59(14):1348–1351. https://doi.org/10.1016/j.tetlet.2018.02.007
Din LB, Zakaria Z, Samsudin MW, Elix JA (2010) Chemical profile of compounds from Lichens of Bukit Larut, Peninsular Malaysia. Sains Malays 39(6):901–908
Giralt M (2010) New morphological and chemical data for Buellia imshaugii. Lichenologist 42(6):763–765. https://doi.org/10.1017/S0024282910000472
Bungartz F, Elix JA, Nash TH III (2004) The genus Buellia sensu lato in the Greater Sonoran Desert Region: saxicolous species with one-septate ascospores containing xanthones. Bryologist 107(4):459–547. https://doi.org/10.1639/0007-2745(2004)107[459:TGBSLI]2.0.CO;2
Lendemer JC, Sheard JW, Göran T, Tønsberg T (2012) Rinodina chrysidiata, a new species from far eastern Asia and the Appalachian Mountains of North America. Lichenologist 44(2):179–187. https://doi.org/10.1017/S0024282911000764
Zhang W, Krohn K, Flörke U, Pescitelli G, Di Bari L, Antus S, Kurtán T, Rheinheimer J, Draeger S, Schulz B (2008) New mono-and dimeric members of the secalonic acid family: blennolides A-G isolated from the fungus Blennoria sp. Chem Eur J 14(16):4913–4923. https://doi.org/10.1002/chem.200800035
El-Elimat T, Figueroa M, Raja HA, Graf T, Swanson SM, Falkinham JO III, Wani MC, Pearce CJ, Oberlies NH (2015) Biosynthetically distinct cytotoxic polyketides from Setophoma terrestris. Eur J Org Chem 2015(1):109–121. https://doi.org/10.1002/ejoc.201402984
Grimme S (2019) Exploration of chemical compound, conformer, and reaction space with meta-dynamics simulations based on tight-binding quantum chemical calculations. J Chem Theory Comput 15(5):2847–2862. https://doi.org/10.1021/acs.jctc.9b00143
Pracht P, Bohle F, Grimme S (2020) Automated exploration of the low-energy chemical space with fast quantum chemical methods. Phys Chem Chem Phys 22(14):7169–7192. https://doi.org/10.1039/C9CP06869D
Neese F, Wennmohs F, Becker U, Riplinger C (2020) The ORCA quantum chemistry program package. J Chem Phys 152(22):224108. https://doi.org/10.1063/5.0004608
Smith SG, Goodman JM (2010) Assigning stereochemistry to single diastereoisomers by GIAO NMR calculation: the DP4 probability. J Am Chem Soc 132(37):12946–12959. https://doi.org/10.1021/ja105035r
Grimblat N, Gavín JA, Hernández Daranas A, Sarotti AM (2019) Combining the power of J coupling and DP4 analysis on stereochemical assignments: the J-DP4 methods. Org Lett 21(11):4003–4007. https://doi.org/10.1021/acs.orglett.9b01193
Acknowledgements
Nguyen V-K would like to thank N. Dangphui for the authentication of the lichen material. Thanks are also extended to the graduate school of Chulalongkorn University to provide 90th year anniversary scholarship.
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Chulalongkorn University to provide 90th year anniversary scholarship.
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Nguyen, VK., Dong, PSN., Nguyen-Si, HV. et al. Eumitrins I–K: three new xanthone dimers from the lichen Usnea baileyi. J Nat Med 77, 403–411 (2023). https://doi.org/10.1007/s11418-023-01681-2
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DOI: https://doi.org/10.1007/s11418-023-01681-2