Skip to main content
Log in

The role of amino acids T148 and R281 in human dihydrolipoamide dehydrogenase

  • Published:
Journal of Biomedical Science

Abstract

Human dihydrolipoamide dehydrogenase (hE3) is a common component of α-ketoacid dehydrogenase complexes. Mutations of this homodimeric protein cause E3 deficiency and are always fatal. To investigate its reaction mechanism, we first performed multiple sequence alignment with other 17 eukaryotic E3s. According to hE3 structure and the result of multiple sequence alignment, two amino acids, T148 and R281, were subjected to mutagenesis and four hE3 mutants, T148G, T148S, R281N, and R281K, were expressed and assayed. The specific activities of T148G, T148S, R281N, and R281K are 76.34%, 88.62%, 12.50%, and 11.93% to that of wild-type E3, respectively. The FAD content analysis indicated that the FAD content of these mutant E3s were about 71.0%, 92%, 96%, and 93% that of wild-type E3, respectively. The molecular weight analysis showed that these three mutant proteins form the dimer. Kinetic data demonstrated that the Kcat of forward reaction of all mutants, except T148 mutants, were decreased dramatically. The results of kinetic study suggest that T148 is not important to E3 catalytic function and R281 play a role in the catalytic function of the E3.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Reed L.J. (1974) Multienzyme complexes. Acc. Chem. Res. 7: 40–46

    Article  CAS  Google Scholar 

  2. Yeaman S.J. (1986) The mammalian 2-oxoacid dehydrogenases: a complex family. Trends Biochem. Sci. 11: 293–296

    Article  CAS  Google Scholar 

  3. Yeaman S.J. (1989) The 2-oxo acid dehydrogenase complexes: recent advances. Biochem. J. 257: 625–632

    PubMed  CAS  Google Scholar 

  4. Walker J.L., Oliver D.J. (1986) Glycine decarboxylase multienzyme complex. Purification and partial characterization from leaf mitochondria. J. Biol. Chem. 261: 2214–2221

    PubMed  CAS  Google Scholar 

  5. Williams C.H. Jr. (1976) Flavin containing dehydrogenases. In: Boyer P. (ed) Enzymes. Academic Press, New York, USA, pp. 89–173

    Google Scholar 

  6. Mattevi A., Schierbeek A.J., Hol W.G. (1991) Refined crystal structure of lipoamide dehydrogenase from Azotobacter vinelandii at 2.2 Å resolution. A comparison with the structure of glutathione reductase. J. Mol. Biol. 220: 975–994

    Article  PubMed  CAS  Google Scholar 

  7. Kikuchi G., Hiraga K. (1982) The mitochondrial glycine cleavage system. Unique features of the glycine decarboxylation. Mol. Cell. Biochem. 45: 137–149

    Article  PubMed  CAS  Google Scholar 

  8. de Kok A., van Berkel W.J.H. (1996) Lipoamide dehydrogenase. In: Patel M.S., Roche T.E., Harris R.A. (Eds), Alpha-Keto Acid Dehydrogenase Complexes. Birkhauser Verlag, Basel, Switzerland, pp. 53–70

    Google Scholar 

  9. Mattevi A., Obmolova G., Sokatch J.R., Betzel C., Hol W.G. (1992) The refined crystal structure of Pseudomonas putida lipoamide dehydrogenase complexed with NAD+ at 2.45 Å resolution. Proteins 13: 336–351

    Article  PubMed  CAS  Google Scholar 

  10. Mattevi A., Obmolova G., Kalk K.H., van Berkel W.J., Hol W.G. (1993) Three-dimensional structure of lipoamide dehydrogenase from Pseudomonas fluorescens at 2.8 Å. Analysis of redox and thermostability properties. J. Mol. Biol. 230: 1200–1215

    Article  PubMed  CAS  Google Scholar 

  11. Brautigam C.A., Chuang J.L., Tomchick D.R., Machius M., Chuang D.T. (2005) Crystal structure of human dihydrolipoamide dehydrogenase: NAD+/NADH binding and the structure basis of disease-causing mutations. J. Mol. Biol. 350: 543–552

    Article  PubMed  CAS  Google Scholar 

  12. Jentoft J.E., Shoham M., Hurst D., Patel M.S. (1992) A structural model for human dihydrolipoamide dehydrogenase. Proteins 14: 88–101

    Article  PubMed  CAS  Google Scholar 

  13. Pons G., Raefsky-Estrin C., Catothers D.J., Repin R.A., Javed A.A., Jesse B.W., Ganapathi M.K., Samols D., Patel M.S. (1988) Cloning and cDNA sequence of the dihydrolipoamide dehydrogenase component of human ketoacid dehydrogenase complex. Proc. Natl. Acad. Sci. USA 85: 1422–1426

    Article  PubMed  CAS  Google Scholar 

  14. Liu T.C., Kim H., Arizmendi C., Kitano A., Patel M.S. (1993) Identification of two missense mutations in a dihydrolipoamide dehydrogenase-deficient patient. Proc. Natl. Acad. Sci. USA 90: 5186–5190

    Article  PubMed  CAS  Google Scholar 

  15. Shaag A., Saada A., Berger I., Mandel H., Joseph A., Feigenbaum A., Elpeleg O.N. (1999) Molecular basis of lipoamide dehydrogenase deficiency in Ashkenazi Jews. Am. J. Med. Genet. 82: 177–182

    Article  PubMed  CAS  Google Scholar 

  16. Cerna L., Wenchich L., Hansikova H., Kmoch S., Peskova K., Chrastina P., Brynda J., Zeman J. (2001) Novel mutations in a boy with dihydrolipoamide dehydrogenase deficiency. Med. Sci. Monit. 7: 1319–1325

    PubMed  CAS  Google Scholar 

  17. Cameron J.M., Levandovskiy V., Mackay N., Raiman J., Renaud D.L., Clarke J.T.R., Feigenbaum A., Elpeleg O., Robinson B.H. (2006) Novel mutations in dihydrolipoamide dehydrogenase deficiency in two cousins with borderline-normal complex activity. Am. J. Med. Genet. Part A 140A: 1542–1552

    Article  CAS  Google Scholar 

  18. Hong Y.S., Kerr D.S., Craigen W.J., Tan J., Pan Y., Lusk M., Patel M.S. (1996) Identification of two mutations in a compound heterozygous child with dihydrolipoamide dehydrogenase deficiency. Hum. Mol. Genet. 5: 1925–1930

    Article  PubMed  CAS  Google Scholar 

  19. Hong Y.S., Kerr D.S., Liu T.C., Lusk M., Powell B.R., Patel M.S. (1997) Deficiency of dihydrolipoamide dehydrogenase due to two mutant alleles (E340K and G101del). Analysis of a family and prenatal testing. Biochim. Biophys. Acta. 1362: 160–168

    PubMed  CAS  Google Scholar 

  20. Grafakou O., Oexle K., van den Heuvel L., Smeets R., Trijbels F., Goebel H.H., Bosshard N., Superti-Furga A., Steinmann B., Smeitink J. (2003) Leigh syndrome due to compound heterozygosity of dihydrolipoamide dehydrogenase gene mutations. Description of the first E3 splice site mutation. Eur. J. Pediatr. 162: 714–718

    Article  PubMed  CAS  Google Scholar 

  21. Shany E., Saada A., Landau D., Shaag A., Hershkovitz E., Elpeleg O.N. (1999) Lipoamide dehydrogenase deficiency due to a novel mutation in the interface domain. Biochem. Biophys. Res. Commun. 262: 163–166

    Article  PubMed  CAS  Google Scholar 

  22. Odievre M.H., Chretien D., Munnich A., Robinson BH., Dumoulin R., Masmoudi S., Kadhom N., Rotig A., Rustin P., Bonnefont J.P. (2005) A novel mutation in the dihydrolipoamide dehydrogenase E3 subunit gene (DLD) resulting in an atypical form of alpha-ketoglutarate dehydrogenase deficiency. Hum. Mutat. 25: 323–324

    Article  PubMed  Google Scholar 

  23. Liu T.C., Hong Y.S., Korotchkina L.G., Vettakkorumakankav N.N., Patel M.S. (1999) Site-directed mutagenesis of human dihydrolipoamide dehydrogenase: role of lysine-54 and glutamate-192 in stabilizing the thiolate-FAD intermediate. Protein Expr. Purif. 16: 27–39

    Article  PubMed  Google Scholar 

  24. Kim H. (2006) Activity of human dihydrolipoamide dehydrogenase is largely reduced by mutation at isoleucine-51 to alanine. J. Biochem. Mol. Biol. 39: 223–227

    PubMed  CAS  Google Scholar 

  25. Kim H. (2002) Activity of human dihydrolipoamide dehydrogenase is reduced by mutation at threonine-44 of FAD-binding region to valine. J. Biochem. Mol. Biol. 35: 437–441

    PubMed  CAS  Google Scholar 

  26. Kim H., Patel M.S. (1992) Characterization of two site-specifically mutated human dihydrolipoamide dehydrogenases (His-452→Gln and Glu-457→Gln). J. Biol. Chem. 267: 5128–5132

    PubMed  CAS  Google Scholar 

  27. Kim H. (2005) Asparagine-473 residue is important to the efficient function of human dihydrolipoamide dehydrogenase. J. Biochem. Mol. Biol. 38: 248–452

    PubMed  CAS  Google Scholar 

  28. Wang Y.C., Wang S.T., Li C., Liu W.H., Chen P.R., Chen L.Y., Liu T.C. (2007) The role of N286 and D320 in the reaction mechanism of human dihydrolipoamide dehydrogenase (E3) center domain. J. Biomed. Sci. 14: 203–210

    Article  PubMed  CAS  Google Scholar 

  29. Liu T.C., Korotchkina L.G., Hyatt S.L., Vettakkorumakankav N.N., Patel M.S. (1995) Spectroscopic studies of the characterization of recombinant human dihydrolipoamide dehydrogenase and its site-directed mutants. J. Biol. Chem. 270: 15545–15550

    Article  PubMed  CAS  Google Scholar 

  30. Sambrook J., Fritsh E.F., Maniatis T. (1989) Molecular Cloning: A Laboratory Mannual, 2nd edn, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 7.43–7.45

    Google Scholar 

  31. Bradford M.M. (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72: 248–254

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ted-Chung Liu.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Wang, YC., Wang, ST., Li, C. et al. The role of amino acids T148 and R281 in human dihydrolipoamide dehydrogenase. J Biomed Sci 15, 37–46 (2008). https://doi.org/10.1007/s11373-007-9208-9

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11373-007-9208-9

Keywords

Navigation