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Light inhibition of carbon mineralization associated with iron redox processes in calcareous paddy soil

  • Soils, Sec 3 • Remediation and Management of Contaminated or Degraded Lands • Research Article
  • Published:
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Abstract

Purpose

The iron redox cycle is closely tied to the fate of carbon in terrestrial ecosystems, especially paddy soils. Varies diurnally and seasonally, light—the crucial environmental factor—may be a fundamental factor elucidating temporal and spatial variabilities of carbon-containing gases emission. The role of sunlight in the iron-mediated carbon cycle, however, has not been fully elucidated. We conduct this study to test the role of light in the iron-mediated carbon cycling.

Materials and methods

In this study, we conducted anaerobic incubation experiments of a calcareous paddy soil in serum vials under alternating dark and light conditions. The dynamic evolution of the carbon and iron contents was evaluated by measuring the CO2, CH4, and O2 concentrations in the headspace of the vials, as well as the water-soluble inorganic carbon, microbial biomass carbon, and HCl-extractable ferrous iron contents in soil slurries. We also analyzed the soil microbial community structure by high-throughput 16S rRNA gene sequencing.

Results and discussion

The results highlighted the positive correlation between carbon mineralization and ferric iron reduction under dark conditions. Under light conditions, however, ferrous iron was oxidized by the O2 generated via oxygenic photosynthesis of phototrophic bacteria such as Cyanobacteria, along with a decreased production of CO2, CH4, and water-soluble inorganic carbon. The abundance of Cyanobacteria positively correlated to O2 levels and MBC content significantly. Light-induced periodic variations in the redox conditions facilitated carbon fixation in microbial biomass and up to 31.79 μmol g−1 carbon was sequestrated during 30 days light incubation.

Conclusions

These results indicate that light inhibits the emission of carbon-containing greenhouse gases associated with the iron redox cycle in calcareous paddy soil. Assimilation of inorganic carbon by phototrophs may responsible for the inhibition of carbon mineralization. Our study suggests that procedures allowing more light to reach the soil surface, for instance, reducing the planting density, may mitigate greenhouse gas emissions and promote carbon sequestration in paddy soils.

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References

  • Ali MA, Kim PJ, Inubushi K (2015) Mitigating yield-scaled greenhouse gas emissions through combined application of soil amendments: a comparative study between temperate and subtropical rice paddy soils. Sci Total Environ 529:140–148

    CAS  Google Scholar 

  • Azam HM, Finneran KT (2013) Ferric iron amendment increases Fe(III)-reducing microbial diversity and carbon oxidation in on-site wastewater systems. Chemosphere 90(4):1435–1443

    CAS  Google Scholar 

  • Bahia ASRD, Marques J, Panosso AR, Camargo LA, Siqueira DS, Scala NL (2014) Iron oxides as proxies for characterizing anisotropy in soil CO2 emission in sugarcane areas under green harvest. Agr Ecosyst Environ 192:152–162

  • Birge HE, Conant RT, Follett RF, Haddix ML, Morris SJ, Snapp SS, Wallenstein MD, Paul EA (2015) Soil respiration is not limited by reductions in microbial biomass during long-term soil incubations. Soil Biol Biochem 81:304–310

    CAS  Google Scholar 

  • Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinform 30:2114–2120

    CAS  Google Scholar 

  • Chen G, Liu Y, Yao H, Huang C (2006) A method for measuring microbial biomass C in waterlogged soil: chloroform fumigation extraction—water bath method. Acta Pedol Sinica 43(06):981–988 (In Chinese)

    CAS  Google Scholar 

  • Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinform 27(16):2194–2200

    CAS  Google Scholar 

  • Elghamry W, Elashkar M (1962) Simplified textural classification triangles. Soil Sci Soc Am J 6(26):612–613

    Google Scholar 

  • Fang K, Qin S, Chen L, Zhang Q, Yang Y (2019) Al/Fe mineral controls on soil organic carbon stock across Tibetan alpine grasslands. J Geophys Res Biogeosci 124(2):247–259

    CAS  Google Scholar 

  • Freeman KR, Pescador MY, Reed SC, Costello EK, Robeson MS, Schmidt SK (2009) Soil CO2 flux and photoautotrophic community composition in highelevation ‘barren’ soil. Environ Microbiol 11(3):674–686

  • Grahammer K, Jawson MD, Skopp J (1991) Day and night soil respiration from a grassland. Soil Biol Biochem 23(1):77–81

    Google Scholar 

  • Huang B, Yu K, Gambrell RP (2009) Effects of ferric iron reduction and regeneration on nitrous oxide and methane emissions in a rice soil. Chemosphere 74(4):481–486

    CAS  Google Scholar 

  • Huang G, Li Y, Su YG (2015) Effects of increasing precipitation on soil microbial community composition and soil respiration in a temperate desert Northwestern China. Soil Biol Biochem 83:52–56

    CAS  Google Scholar 

  • Jiang J, Guo S, Zhang Y, Liu Q, Wang R, Wang Z, Li N, Li R (2015) Changes in temperature sensitivity of soil respiration in the phases of a three-year crop rotation system. Soil Tillage Res 150:139–146

    Google Scholar 

  • Kappler A, Newman DK (2004) Formation of Fe(III)-minerals by Fe(II)-oxidizing photoautotrophic bacteria. Geochim Cosmochim Acta 68(6):1217–1226

    CAS  Google Scholar 

  • Khalil MI, Abdalla M, Lanigan G, Osborne B, Müller C (2016) Evaluation of parametric limitations in simulating greenhouse gas fluxes from Irish arable soils using three process-based models. Agric Sci 07(08):503–520

    CAS  Google Scholar 

  • Kühl M, Lassen C, Jorgensen BB (1994) Light penetration and light intensity in sandy marine sediments measured with irradiance and scalar irradiance fiber-optic microprobes. Mar Ecol Prog Ser 105:139–148

    Google Scholar 

  • Lalonde K, Mucci A, Ouellet A, Gélinas Y (2012) Preservation of organic matter in sediments promoted by iron. Nature 483(7388):198–200

    CAS  Google Scholar 

  • Li X, Li F, Zhang W, Liu T, Chen L, Chen P (2016) Changes in the composition and diversity of microbial communities during anaerobic nitrate reduction and Fe(II) oxidation at circumneutral pH in paddy soil. Soil Biol Biochem 94:70–79

    CAS  Google Scholar 

  • Liu S, Zhang L, Liu Q, Zhou J (2012) Fe(III) fertilization mitigating net global warming potential and greenhouse gas intensity in paddy rice-wheat rotation systems in China. Environ Pollut 164:73–80

  • Liu T, Chen D, Li X, Li F (2019) Microbially mediated coupling of nitrate reduction and Fe(II) oxidation under anoxic conditions. FEMS Microb Ecol 95(4):1–12

    CAS  Google Scholar 

  • Lovley DR (1991) Dissimilatory Fe(III) and Mn(IV) reduction. Microbiol Rev 55(2):259–287

    CAS  Google Scholar 

  • Lovley DR, Holmes DE, Nevin KP (2004) Dissimilatory Fe(III) and Mn(IV) reduction. Advances Microb Physiol 49:219–286

    CAS  Google Scholar 

  • Lu R (2000) Analytical method of soil agricultural chemistry (in Chinese). China Agric Sci and Technol Press Beijing

  • Magoč T, Salzberg SL (2011) FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinform 27(21):2957–2963

    Google Scholar 

  • Maitte B, Jorand FPA, Grgic D, Abdelmoula M, Carteret C (2015) Remineralization of ferrous carbonate from bioreduction of natural goethite in the Lorraine iron ore (Minette) by Shewanella putrefaciens. Chem Geol 412:48–58

    CAS  Google Scholar 

  • Pham HTL, Nguyen LTT, Duong TA, Bui DTT, Doan QT, Nguyen HTT, Mundt S (2017) Diversity and bioactivities of nostocacean cyanobacteria isolated from paddy soil in Vietnam. Syst Appl Microbiol 40(8):470–481

  • Qu D, Schnell S (2002) Suppression of methanogenesis by iron oxides in paddy soil (in Chinese). Acta Sci Circumst 22(1):65–69

    CAS  Google Scholar 

  • Qu D, Ratering S, Schnell S (2004) Microbial reduction of weakly crystalline iron (III) oxides and suppression of methanogenesis in paddy soil. Bull Environ Contam Toxicol 72(6):1172–1181

    CAS  Google Scholar 

  • Rey A (2015) Mind the gap: non-biological processes contributing to soil CO2 efflux. Glob Chang Biol 21(5):1752–1761

    Google Scholar 

  • Roden EE, Mcbeth JM, Marco B, Percak-dennett EM, Fleming EJ, Holyoke RR, Luther GW, Emerson D, Schieber J (2012) The microbial ferrous wheel in a neutral pH groundwater seep. Front Microbiol 3:172

    Google Scholar 

  • Roslev P, Iversen N, Henriksen K (1997) Oxidation and assimilation of atmospheric methane by soil methane oxidizers. Appl Environ Microbiol 63(3):874–880

    CAS  Google Scholar 

  • Rutledge S, Campbell DI, Baldocchi D, Schipper LA (2010) Photodegradation leads to increased carbon dioxide losses from terrestrial organic matter. Glob Chang Biol 16(11):3065–3074

    Google Scholar 

  • Soo RM, Hemp J, Parks DH, Fischer WW, Hugenholtz P (2017) On the origins of oxygenic photosynthesis and aerobic respiration in Cyanobacteria. Science 355(6332):1436

    CAS  Google Scholar 

  • Stal LJ, Moezelaar R (1997) Fermentation in cyanobacteria. FEMS Microbiol Rev 21:179–211

    CAS  Google Scholar 

  • Steffen W, Rochstrom J, Richardson K, Lenton T, Folke C, Liverman D, Summerhayes C, Barnosky A, Cornell S, Crucifix M, Donges J, Fetzer I, Lade S, Scheffer M, Winkelmann R, Schellnhuber H (2018) Trajectories of the Earth System in the Anthropocene. PNAS 115(33):8252–8259

    Google Scholar 

  • Sun L, Qu D, Wei Y (2008) Effect of illumination on iron oxide reduction in anaerobic paddy soils (in Chinese). Acta Pedol Sinica 45(4):628–634

    CAS  Google Scholar 

  • Vermeire M, Bonneville S, Stenuit B, Delvaux B, Cornélis J (2019) Is microbial reduction of Fe (III) in podzolic soils influencing C release? Geoderma 340:1–10

    CAS  Google Scholar 

  • Wang Y, Yang H, Ye C, Chen X, Xie B, Huang C, Zhang J, Xu M (2013) Effects of plant species on soil microbial processes and CH4 emission from constructed wetlands. Environ Pollut 174:273–278

    CAS  Google Scholar 

  • Wang Y, Wang H, He J, Feng X (2017) Iron-mediated soil carbon response to water-table decline in an alpine wetland. Nat Commun 8:15972–15981

    CAS  Google Scholar 

  • Weber KA, Achenbach LA, Coates JD (2006a) Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction. Nat Rev Microbiol 4(10):752–764

    CAS  Google Scholar 

  • Weber KA, Pollock J, Cole KA, O’Connor SM, Achenbach LA, Coates JD (2006b) Anaerobic nitrate-dependent iron(II) bio-oxidation by a novel lithoautotrophic betaproteobacterium strain 2002. Appl Environ Microbiol 72(1):686–694

    CAS  Google Scholar 

  • Wei S, Zhang X, McLaughlin NB, Yang X, Liang A, Jia S, Chen X (2016) Effect of breakdown and dispersion of soil aggregates by erosion on soil CO2 emission. Geoderma 264:238–243

    CAS  Google Scholar 

  • Yang R, Chen B, Liu H, Liu Z, Yan H (2015) Carbon sequestration and decreased CO2 emission caused by terrestrial aquatic photosynthesis: insights from diel hydrochemical variations in an epikarst spring and two spring-fed ponds in different seasons. Appl Geochem 63:248–260

    CAS  Google Scholar 

  • Yin X, Wu W, Maeke M, Richter-Heitmannn T, Kulkarni AC, Oni OE, Wendt J, Elvert M, Friedrich M (2019) CO2 conversion to methane and biomass in obligate methylotrophic methanogens in marine sediments. ISME J. https://doi.org/10.1038/s41396-019-0425-9

  • Zhang W, Yu Y, Huang Y, Li T, Wang P (2011) Modeling methane emissions from irrigated rice cultivation in China from 1960 to 2050. Glob Chang Biol 17(12):3511–3523

    Google Scholar 

  • Zhao Q, Adhikari D, Huang R, Patel A, Wang X, Tang Y, Obrist D, Roden EE, Yang Y (2017) Coupled dynamics of iron and iron-bound organic carbon in forest soils during anaerobic reduction. Chem Geol 464:118–126

    CAS  Google Scholar 

Download references

Acknowledgments

We sincerely appreciate the anonymous reviewers for their constructive comments and helpful suggestions.

Funding

This study was funded by the National Natural Science Foundation of China (U1904121, U1504402, and 41601369) and the China Scholarship Council (201908410062).

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Authors and Affiliations

  1. Agricultural College, Henan University of Science & Technology, No. 263, Kaiyuan Avenue, Luoyang, 471003, Henan, People’s Republic of China

    Xugang Wang, Lirong Sun, Zhihuai Chen, Dayong Guo, Haolong Fan, Xiaofeng Xu, Zhaoyong Shi & Xianni Chen

  2. Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, 471003, Henan, People’s Republic of China

    Xugang Wang & Zhaoyong Shi

  3. Luoyang Key Laboratory of Plant Nutrition and Environmental Ecology, Luoyang, 471003, Henan, People’s Republic of China

    Xugang Wang, Lirong Sun, Dayong Guo, Xiaofeng Xu, Zhaoyong Shi & Xianni Chen

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  1. Xugang Wang
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  2. Lirong Sun
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Correspondence to Xugang Wang.

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Responsible editor: Yan He

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Wang, X., Sun, L., Chen, Z. et al. Light inhibition of carbon mineralization associated with iron redox processes in calcareous paddy soil. J Soils Sediments 20, 3171–3180 (2020). https://doi.org/10.1007/s11368-020-02660-w

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  • DOI: https://doi.org/10.1007/s11368-020-02660-w

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