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Development of the Diatom Ecological Quality Index (DEQI) for peri-urban mountain streams in the Basin of Mexico

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Abstract

In the Basin of Mexico, one of the most important economic regions in the country with over 22 million inhabitants, peri-urban streams have been transformed into sewers, drains, and pipes to avoid flooding or unsanitary conditions; the change affects not only the ecosystem’s goods and services but also the aquatic communities that support the natural ecological processes. We aimed to develop a diatom-based diagnosis of the ecological quality of these aquatic ecosystems through the study of epilithic diatom response to regional environmental gradients. Samples of epilithic diatoms and water were collected in 45 sites representing 12 perennial streams, and multivariate analyses were performed on environmental and biological data. The ecological quality gradient to which diatoms responded was related to oxygen saturation, soluble reactive phosphorous, dissolved inorganic nitrogen, and hydromorphological quality. Three species groups were recognized according to their ecological preferences along CCA1 axis, indicators of high and low ecological quality, and tolerant species. By assigning an indicator value to each species group, we calculated the DEQI using the formula adapted from Pantle and Buck, indicating five different ecological quality classes. This index is proposed for complementing the ecological quality evaluation as a biological metric that responds to multiple regional stressors of the structure and function of these peri-urban streams in the Basin of Mexico.

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References

  • Abarca N, Jahn R, Zimmermann J, Enke N (2014) Does the cosmopolitan diatom Gomphonema parvulum (Kützing) Kützing have a biogeography? PLoS One 9(1):e86885. https://doi.org/10.1371/journal.pone.0086885

    Article  CAS  Google Scholar 

  • Abuhatab-Aragón YA, Donato-Rondón JC (2012) Cocconeis placentula y Achnanthidium minutissimum especies indicadoras de arroyos oligotróficos andinos. Caldasia 34(1):205–212 (in Spanish)

    Google Scholar 

  • Acosta R, Ríos B, Rieradevall M, Prat N (2009) Propuesta de un protocolo de evaluación de la calidad ecológica de ríos andinos (CERA) y su aplicación a dos cuencas en Ecuador y Perú. Limnetica 28(1):35–64 (in Spanish)

    Google Scholar 

  • Álvarez-Blanco I, Cejudo-Figueiras C, Bécares E, Blanco S (2011) Spatiotemporal changes in diatom ecological profiles: implications for biomonitoring. Limnology 12(2):157–168. https://doi.org/10.1007/s10201-010-0333-1

    Article  CAS  Google Scholar 

  • Álvarez-Blanco I, Blanco S, Cejudo-Figueiras C, Bécares E (2013) The Duero Diatom Index (DDI) for river water quality assessment in NW Spain: design and validation. Environ Monit Assess 185:969–981. https://doi.org/10.1007/s10661-012-2607-z

    Article  CAS  Google Scholar 

  • Ávila-Akerberg VD (2010) Forest quality in the southwest of México City. Assessment towards ecological restoration of ecosystem services. Dissertation, University of Freiburg, Germany: Faculty of Forest and Environmental Sciences, Albert-Ludwigs-Universitat

  • Bahls L, Teply M, Sada de Suplee R, Suplee MW (2008) Diatom bio criteria development and water quality assessment in Montana: a brief history and status report. Diatom Research 23(2):533–540

    Article  Google Scholar 

  • Baird RB, Eaton AD, Rice EW (Eds.) (2017) Standard methods for examination of water and wastewater (23rd Ed.). American Public Health Association (APHA), American Water Works Association and Water Environment Federation, Washington, D.C.

  • Bere T, Mangadze T, Mwedzi T (2016) Variation partitioning of diatom species data matrices: understanding the influence of multiple factors on benthic diatom communities in tropical streams. Sci Total Environ 566:1604–1613. https://doi.org/10.1016/j.scitotenv.2016.06.058

    Article  CAS  Google Scholar 

  • Bey M, Ector L (2013) Atlas des diatomées des cours déau de la région Rhône-Alpes. Tome 3. Direction régionale de lÉnvironnment, de lÁménagement et du Logement Rhône-Alpes, Caluire

  • Branco SM (2005) Água: Origem, uso e preservação. Editora Moderna, São Paulo (in Portuguese)

    Google Scholar 

  • Cantonati M, Kelly MG, Lange-Bertalot H (2017) Freshwater benthic diatoms of Central Europe: over 800 common species used in ecological assessment. Koeltz Botanical Books, Schmitten-Oberreifenberg

    Google Scholar 

  • Carmona-Jiménez J, Caro-Borrero A (2017) The last peri-urban rivers of the Mexico Basin: establishment of the reference conditions through the evaluation of ecological quality and biological indicators. Revista Mexicana de Biodiversidad 88(2):425–436. https://doi.org/10.1016/j.rmb.2017.03.019

    Article  Google Scholar 

  • Carmona-Jiménez J, Ramírez-Rodríguez R, Bojorge-García MG, González-Hidalgo B, Cantoral-Uriza EA (2016) Estudio del valor indicador de las comunidades de algas bentónicas: una propuesta de evaluación y aplicación en el río Magdalena, Ciudad de México. Revista Internacional de Contaminación Ambiental 32(2):139–152 (in Spanish). https://doi.org/10.20937/RICA.2016.32.02.01

    Article  Google Scholar 

  • Comisión Nacional del Agua (CONAGUA) (2018) Estadísticas del agua en México, edición 2018. Secretaría del Medio Ambiente y Recursos Naturales. Comisión Nacional del Agua, Ciudad de México (in Spanish)

    Google Scholar 

  • Diario Oficial de la Federación (DOF) (2003) [Norma Oficial MexicanaNOM-001-SEMARNAT-1996 (aclaración a la NOM-001-ECOL-1996), que establece los límites máximos permisibles de contaminantes en las descargas de aguas residuales en aguas y bienes nacionales] (in Spanish). http://biblioteca.semarnat.gob.mx/janium/Documentos/Ciga/agenda/DOFsr/60197.pdf. Accessed 20 August 2019

  • Dodds WK (2003) Misuse of inorganic N and soluble reactive P concentrations to indicate nutrient status of surface waters. J N Am Benthol Soc 22(2):171–181. https://doi.org/10.2307/1467990

    Article  Google Scholar 

  • Dodds WK, Jones JR, Welch EB (1998) Suggested classification of stream trophic state: distributions of temperate stream types by chlorophyll, total nitrogen, and phosphorus. Water Res 32(5):1455–1462. https://doi.org/10.1016/S0043-1354(97)00370-9

    Article  CAS  Google Scholar 

  • Dupas R, Delmas M, Dorioz JM, Garnier J, Moatar F, Gascuel-Odoux C (2015) Assessing the impact of agricultural pressures on N and P loads and eutrophication risk. Ecol Indic 48:396–407. https://doi.org/10.1016/j.ecolind.2014.08.007

    Article  CAS  Google Scholar 

  • Ector L, Rimet F (2005) Using bioindicators to assess rivers in Europe: an overview. In: Lek S, Scardi M, Verdonschot PFM, Decsy JP, Park YS (eds) Modelling community structure in freshwater ecosystems. Springer, Berlin, pp 7–19

    Google Scholar 

  • Espinosa G, SarukÁn J (1997). Manual de malezas del Valle de México. Ciu- dad de México, México: Universidad Nacional Autónoma de México/Fondo de Cultura Económica

  • Esteves FA (2011). Fundamentos de Limnologia. Interciência LTDA: Rio de Janeiro (in Portuguese)

  • European Commission (EC) (2000) Directive 2000/60/ EC of the European Parliament and of the Council of 23 October 2000 establishing a framework for community action in the field of water policy. Official Journal of the European Communities L 327, 22/12/2000, 1–73

  • Ferrusquía-Villafranca F (1998) Geología de México: una sinopsis. In: Ramamoorthy TP, Bye R, Lot A, Fa J (Eds.) Diversidad biológica de México. Orígenes y distribución (pp. 3–108). Instituto de Biología, UNAM, Ciudad de México, pp 3–108 (in Spanish)

  • García E (2004) Modificaciones al sistema de clasificación climática de Köppen. Instituto de Geografía, Ciudad de México (in Spanish)

  • Gomà J, Rimet F, Cambra J, Hoffmann L, Ector L (2005) Diatom communities and water quality assessment in mountain rivers of the upper Segre basin (La Cerdanya, Oriental Pyrenees). Hydrobiologia 551(1):209–225. https://doi.org/10.1007/s10750-005-4462-1

    Article  Google Scholar 

  • Gómez N, Licursi M (2001) The Pampean Diatom Index (IDP) for assessment of rivers and streams in Argentina. Aquat Ecol 35(2):173–181. https://doi.org/10.1023/A:1011415209445

    Article  Google Scholar 

  • Hach (2003) Water analysis handbook, 4th edn. Hach Co, Loveland

    Google Scholar 

  • Hill BH, Stevenson RJ, Pan Y, Herlihy AT, Kaufmann PR, Johnson CB (2001) Comparison of correlations between environmental characteristics and stream diatom assemblages characterized at genus and species levels. J N Am Benthol Soc 20(2):299–310. https://doi.org/10.2307/1468324

    Article  Google Scholar 

  • Jahn R, Kusber WH, Romero OE (2009) Cocconeis pediculus Ehrenberg and C. placentula Ehrenberg var. placentula (Bacillariophyta): Typification and taxonomy. Fottea 9(2):275–288. https://doi.org/10.5507/fot.2009.027

    Article  Google Scholar 

  • Jahn R, Abarca N, Gemeinholzer B, Mora D, Skibbe O, Kulikovskiy M, Gusev E, Kusber WH, Zimmermann J (2017) Planothidium lanceolatum and Planothidium frequentissimum reinvestigated with molecular methods and morphology: four new species and the taxonomic importance of the sinus and cavum. Diatom Research 32(1):75–107. https://doi.org/10.1080/0269249X.2017.1312548

    Article  Google Scholar 

  • Karr JR, Allen JD, Benke AC (2000) River conservation in the United States and Canada. In: Boon PJ, Davies BR, Petts GE (eds) Global perspectives on river conservation: science, policy and practice. Wiley, New York, pp 3–39

    Google Scholar 

  • Kelly MG (2001) Use of similarity measures for quality control of benthic diatom samples. Water Res 35(11):2784–2788. https://doi.org/10.1016/S0043-1354(00)00554-6

    Article  CAS  Google Scholar 

  • Kelly MG, Whitton BA (1995) The trophic diatom index: a new index for monitoring eutrophication in rivers. J Appl Phycol 7(4):433–444. https://doi.org/10.1007/BF00003802

    Article  Google Scholar 

  • Kobayasi H, Mayama S (1989) Evaluation of river water quality by diatoms. The Korean Journal of Phycology 4:121–133

    Google Scholar 

  • Krammer K (2000) Diatoms of Europe. Diatoms of the European inland waters and comparable habitats. The genus Pinnularia. Vol. 1. Koeltz Scientific Books, Koenigstein

  • Krammer K, Lange-Bertalot H (1986–1991) Bacillariophyceae. In: Ettl H, Gerloff J, Heynig H, Mollenhauer D (Eds.) Sußwasserflora von Mitteleuropa, Vol. 2 /1 (1986), 2/2 (1988), 2/3 (1991a), 2/4 (1991b). Gustav Fischer Verlag, Sttutgart-New York (in German)

  • Lange-Bertalot H (1979) Pollution tolerance of diatoms as a criterion for water quality estimation. Nova Hedwig Beih 64:285–304

    Google Scholar 

  • Legorreta J (2009) Ríos, lagos y manantiales del valle de México. Universidad Autónoma Metropolitana, Mexico City (in Spanish)

  • Leira M, Sabater S (2005) Diatom assemblages distribution in catalan rivers, NE Spain, in relation to chemical and physiographical factors. Water Res 39:73–82. https://doi.org/10.1016/j.watres.2004.08.034

    Article  CAS  Google Scholar 

  • Levkov Z, Mihalić KC, Ector L (2010) A taxonomical study of Rhoicosphenia Grunow (Bacillariophyceae) with a key for identification of selected taxa. Fottea 10(2):145–200. https://doi.org/10.5507/fot.2010.010

    Article  Google Scholar 

  • Lobo E, Leighton G (1986) Estructuras comunitarias de las fitocenosis planctonicas de los sistemas de desembocaduras de rios y esteros de la zona central de Chile. Rev Biol Mar Oceanogr 22(1):1–29 (in Spanish)

    Google Scholar 

  • Lobo EA, Callegaro VL, Hermany G, Bes D, Wetzel CE, Oliveira MA (2004) Use of epilithic diatoms as bioindicator from lotic systems in Southern Brazil, with special emphasis on eutrophication. Acta Limnologica Brasiliensia 16:25–40

    Google Scholar 

  • Lobo EA, Wetzel CE, Ector L, Katoh K, Blanco S, Mayama S (2010) Response of epilithic diatom communities to environmental gradients in subtropical temperate Brazilian rivers. Limnetica 29(2):323–340. https://doi.org/10.23818/limn.29.27

    Article  Google Scholar 

  • Lobo EA, Schuch M, Heinrich CG, Da Costa AB, Düpont A, Wetzel CE, Ector L (2015) Development of the Trophic Water Quality Index (TWQI) for subtropical temperate Brazilian lotic systems. Environ Monit Assess 187:354. https://doi.org/10.1007/s10661-015-4586-3

    Article  CAS  Google Scholar 

  • Lobo EA, Heinrich CG, Schuch M, Wetzel CE, Ector L (2016) Diatoms as bioindicators in rivers. In: Necci O (ed.) River algae. Springer, pp. 245-271

  • Lobo EA, Weber-Freitas N, Salinas VH (2019) Diatomeas como bioindicadores: Aspectos ecológicos de la respuesta de las algas a la eutrofización en América Latina. Mexican Journal of Biotechnology 4(1):1–24 (in Spanish). https://doi.org/10.29267/mxjb.2019.4.1.1

    Article  Google Scholar 

  • Mazari-Hiriart M, Pérez-Ortíz G, Orta-Ledesma MT, Armas-Vargas F, Tapia MA, Solano-Ortiz R, Silva MA, Yañez-Noguez I, López-Vidal Y, Díaz-Ávalos C (2014) Final opportunity to rehabilitate an urban river as a water source for Mexico City. PLoS One 9(7):1–17. https://doi.org/10.1371/journal.pone.0102081

    Article  CAS  Google Scholar 

  • Metzeltin D, García-Rodríguez F (2003) Las diatomeas uruguayas. DI.R.A.C. – Facultad de Ciencias, Montevideo (in Spanish)

  • Metzeltin D, Lange-Bertalot H (1998) Tropische Diatomeen in Südamerika I. 700 überwiegend wenig bekannte oder neue Taxa repräsentativ als Elemente der neotropischen Flora. In: Lange-Bertalot H (ed.) Iconographia Diatomologica, 5. A. R. G. Gantner Verlag, Konigstein (in German)

  • Metzeltin D, Lange-Bertalot H (2007) Tropical diatoms of South America II. Special remarks on biogeographic disjunction. In: Lange-Bertalot H (ed.) Iconographia Diatomologica, 18. A. R. G. Gantner Verlag, Konigstein

  • Metzeltin D, Lange-Bertalot H, García-Rodríguez F (2005) Diatoms of Uruguay. Compared with other taxa from South America and elsewhere. In: Lange-Bertalot H (ed.) Iconographia Diatomologica, 15. A. R. G. Gantner Verlag, Konigstein

  • Mora D, Carmona-Jiménez J, Jahn R, Zimmermann J, Abarca N (2017) Epilithic diatom communities of selected streams from the Lerma-Chapala Basin, Central Mexico, with the description of two new species. PhytoKeys 88:39–62. https://doi.org/10.3897/phytokeys.88.14612

    Article  Google Scholar 

  • Morales EA, Vis ML (2007) Epilithic diatoms (Bacillariophyceae) from cloud forest and alpine streams in Bolivia, South America. Proc Acad Natl Sci Phila 156:123–155. https://doi.org/10.1635/0097-3157(2007)156[123:EDBFCF]2.0.CO;2

    Article  Google Scholar 

  • Nicolosi-Gelis MM, Cochero J, Donadelli J, Gómez N (2020) Exploring the use of nuclear alterations, motility and ecological guilds in epipelic diatoms as biomonitoring tools for water quality improvement in urban impacted lowland streams. Ecological Indicators 110. https://doi.org/10.1016/j.ecolind.2019.105951

  • Oksanen J, Blanchet FG, Friendly M, Kindt R, Legendre P, McGlinn D, Minchin PR, O’Hara RB, Simpson GL, Solymos P, Stevens MHH, Szoecs E, Wagner H (2019) vegan: community ecology package. R package version 2.5–6. https://CRAN.R-project.org/package=vegan

  • Pantle R, Buck H (1955) Die biologische Überwachung der Gewässer und die Darstellung der Ergebnisse. Gas- und Wasserfach Wasser und Abwasser 96:609–620 (in German)

    Google Scholar 

  • Potapova M, Charles DF (2003) Distribution of benthic diatoms in U.S. rivers in relation to conductivity and ionic composition. Freshw Biol 48:1311–1328. https://doi.org/10.1046/j.1365-2427.2003.01080.x

    Article  CAS  Google Scholar 

  • Prygiel J, Coste M (1993) The assessment of water quality in the Artois-Picardie water basin (France) by the use of diatom indices. Hydrobiologia 269(1):343–349. https://doi.org/10.1007/BF00028033

    Article  Google Scholar 

  • Ramírez-Vázquez M, Beltran-Magos Y, Bojorge-García MG, Carmona-Jiménez J, Cantoral-Uriza EA, Valadez-Cruz F (2001) Flora algal del río la Magdalena Distrito Federal, México. Boletín de la Sociedad Botánica de México 68:45–67 (in Spanish). https://doi.org/10.17129/botsci.1635

    Article  Google Scholar 

  • Rocha A (1992) Algae as biological indicators of water pollution. In: Cordeiro-Marino M, Azebedo MTP, Sant’Anna CL, Tomita NY, Plastino EM (Eds.) Algae and environment: a general approach. Sociedade Brasileira de Ficologia, CETEBS, São Paulo, pp. 34–52

  • RStudio Team (2019) RStudio: integrated development for R. RStudio, Inc., Boston, MA URL http://www.rstudio.com/

  • Rumrich U, Lange-Bertalot H, Rumrich M (2000) Diatomeen der Anden. Von Venezuela bis Patagonien/Feuerland. In: Lange-Bertalot H (ed.) Iconographia Diatomologica, 9. A. R. G. Gantner Verlag, Konigstein (in German)

  • Rzedowski CG, Rzedowski J (2001). Flora fanerogÁmica del Valle de Méx- ico (2nd ed.). PÁtzcuaro, MichoacÁn: Instituto de Ecología A.C./Comisión Nacional para el Conocimiento y Uso de la Biodiversidad

  • Schneider SC, Cara M, Eriksen TE, Goreska BB, Imeri A, Kupe L, Lokoska T, Patceva S, Trajanovska S, Trajanovski S, Talevska M, Sarafiloska EV (2014) Eutrophication impacts littoral biota in Lake Ohrid while water phosphorus concentrations are low. Limnologica 44:90–97. https://doi.org/10.1016/j.limno.2013.09.002

    Article  CAS  Google Scholar 

  • Segura-García V, Israde-Alcántara I, Maidana NI (2010) The genus Navicula sensu stricto in the upper Lerma Basin, Mexico. I. Diatom Research 25(2):367–383. https://doi.org/10.1080/0269249X.2010.9705857

    Article  Google Scholar 

  • Segura-García V, Cantoral-Uriza EA, Israde-Alcántara I, Maidana NI (2012) Diatomeas epilíticas como indicadores de la calidad del agua en la cuenca alta del río Lerma México. Hidrobiológica 22(1):16–27 (in Spanish)

    Google Scholar 

  • Skoulikidis NT, Gritzalis KC, Kouvarda T, Buffagni A (2004) The development of an ecological quality assessment and classification system for Greek running waters based on benthic macroinvertebrates. Hydrobiologia 516:149–160. https://doi.org/10.1023/B:HYDR.0000025263.76808.ac

    Article  CAS  Google Scholar 

  • Skoulikidis NT, Amaxidis Y, Bertahas I, Laschou S, Gritzalis K (2006) Analysis of factors driving stream water composition and synthesis of management tools—a case study on small/medium Greek catchments. Sci Total Environ 362(1–3):205–241. https://doi.org/10.1016/j.scitotenv.2005.05.018

    Article  CAS  Google Scholar 

  • Solninen J, Paavola R, Muotka T (2004) Benthic diatom communities in boreal streams: community structure in relation to environmental and spatial gradients. Ecography 27:330–342. https://doi.org/10.1111/j.0906-7590.2004.03749.x

    Article  Google Scholar 

  • Stevenson RJ, Pan Y, Van Dam H (2010) Assessing environmental conditions in lakes and streams with diatoms. In: Stoermer EF, Smol JP (eds) The diatoms: application for environmental and earth sciences. Cambridge University Press, Cambridge, pp 57–85

    Chapter  Google Scholar 

  • Trobajo R, Rovira L, Ector L, Wetzel CE, Kelly M, Mann DG (2013) Morphology and identity of some ecologically important small Nitzschia species. Diatom Research 28(1):37–59. https://doi.org/10.1080/0269249X.2012.734531

    Article  Google Scholar 

  • Van Dam H, Mertens A, Sinkeldam J (1994) A coded checklist and ecological indicator values of freshwater diatoms from The Netherlands. Neth J Aquat Ecol 28(1):117–133. https://doi.org/10.1007/BF02334251

    Article  Google Scholar 

  • Ward JH (1963) Hierarchical grouping to optimize an objective function. J Am Stat Assoc 58(301):236–244

    Article  Google Scholar 

  • Wetzel RG (1983) Limnology, 2nd edn. Saunders College Publishing, New York

    Google Scholar 

  • Whitton BA, Kelly MG (1995) Use of algae and other plants for monitoring rivers. Aust J Ecol 20(1):45–56. https://doi.org/10.1111/j.1442-9993.1995.tb00521.x

    Article  Google Scholar 

  • Wickham H (2016) ggplot2: elegant graphics for data analysis. Springer-Verlag, New York

    Book  Google Scholar 

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Funding

The authors would like to thank the Posgrado en Ciencias del Mar y Limnología, UNAM, and to CONACYT for the scholarship granted to the first author (747202). JCJ received financial support through the Research Grant PAPIIT-UNAM (IN220115 and IN307219) and PAPIME-UNAM (PE201118). We also thank MSc Arantza Ivonne Daw Guerrero for her help in preparing the map.

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All authors contributed to the study conception and design. Material preparation, data collection, and analysis were performed by Victor Hugo Salinas Camarillo and Javier Carmona-Jiménez. Eduardo Lobo drafted the work and revised it critically for important intellectual content. The first draft of the manuscript was written by Victor Hugo Salinas, and all authors commented on previous versions of the manuscript. All authors read and approved the final manuscript.

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Correspondence to Javier Carmona-Jiménez.

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Salinas-Camarillo, V.H., Carmona-Jiménez, J. & Lobo, E.A. Development of the Diatom Ecological Quality Index (DEQI) for peri-urban mountain streams in the Basin of Mexico. Environ Sci Pollut Res 28, 14555–14575 (2021). https://doi.org/10.1007/s11356-020-11604-3

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