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The Effects of Substrate Type on Diatom-Based Multivariate Water Quality Assessment in a Tropical River (Monjolinho), São Carlos, SP, Brazil

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Abstract

Diatoms are good indicators of water quality in lotic systems. Unlike in the temperate region, the effect of substrate on diatom-based water quality assessment in tropical streams is not fully understood. The purpose of this study was to assess the effect of substrate on diatom-based multivariate water quality assessment. Epilithic, epiphytic, epipsammic and epipelic diatom community and water quality sampling was done four times at 10 sites during the dry season (2008 and 2009). Artificial substrates (brick and glasses) were also placed at the sampling sites during this period and sampled after 1 month. Cluster analysis was performed to show the main differences and similarities in community composition amongst substrates sampled and amongst sampling sites. The IndVal method was used to identify indicator species characterising different substrates. Canonical correspondence analyses (CCAs) were performed to relate the structure of diatom communities from different substrates to predictor variables. A gradient of increasing metal and organic pollution, eutrophication and ionic strength was observed from the agricultural/forested area to the urban area. Diatom community structure closely reflected this gradient, with communities from polluted sites (8, 9 and 10) being different from other communities. Polluted sites were associated with such species as Nitzschia palea, Plantago lanceolata, Achnanthes exigua, Caloneis hyaline, Cyclotella meneghiniana, Gomphonema parvulum, Fallacia monoculata, Luticola goeppertiana, Pinnularia microstauron, Pinnularia subcapitata and Sellaphora pupula. Indicator species analysis showed that common diatom species were not restricted to a single substrate, though preference was generally high for natural (especially macrophytes) compared to artificial substrates. Six CCAs corresponding to six substrates performed to relate diatom community structure to simultaneous effects of predictor variables explained ∼50% of the diatom species variance in all cases and roughly separated highly polluted sites from the rest of the sites. This indicates that the results of diatom-based multivariate water quality assessment based on different substrates may be interchangeable. Only one substrate has to be collected at each site for water quality assessment surveys, thus avoiding unnecessary expensive and time-consuming oversampling. Given the limitations of artificial substrates, sampling of natural substrates is highly recommended.

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References

  • APHA, M. A. H. (Ed.). (1988). Standard methods for the examination of water and waste water (20th ed.). Washington: American Public Health Association.

    Google Scholar 

  • Asai, K., & Watanabe, T. (1995). Statistic classification of epilithic species into three ecological groups relating to organic water pollution (2) saprophilous and saproxenous taxa. Diatom, Japan, 10, 35–47.

    Google Scholar 

  • Bere, T., & Tundisi, J. G. (2009). Weighted average regression and calibration of conductivity and pH of benthic diatoms in streams influenced by urban pollution—Sao Carlos/SP Brazil. Acta Limnologica Brasiliensis, 21, 317–325.

    Google Scholar 

  • Bere, T. & Tundisi, J. G. (2010). Epipsammic diatoms in streams influenced by urban pollution, São Carlos-SP, Brazil. Brazilian Journal of Biology, 70 (in press).

  • Bicudo, C. E. M., & Menezes, M. (2006). Gêneros de água de águas continentais do Brazil: Chave para identificação e descrições. São Carlos: Rima Editora.

    Google Scholar 

  • Biggs, B. J. F., & Kilroy, C. (2000). Stream periphyton monitoring manual. Christchurch: NIWA.

    Google Scholar 

  • Chessman, B., Growns, I., Currey, J., & Plunkett-Cole, N. (1999). Predicting diatom communities at the genus level for the rapid biological assessment of rivers. Freshwater Biology, 41, 317–331.

    Article  Google Scholar 

  • Clements, W. H., Carlisle, D. M., Lazorchak, J. M., & Johnson, P. C. (2000). Heavy metals structure benthic communities in Colorado mountain streams. Ecological Applications, 10, 626–638.

    Article  Google Scholar 

  • De La Rey, P. A., Roux, H., Van Rensburg, L., & Vosloo, A. (2008). On the use of diatom-based biological monitoring Part 2: A comparison of the response of SASS 5 and diatom indices to water quality and habitat variation. Water SA, 34, 61–69.

    Google Scholar 

  • Descy, J. P., & Coste, M. (1991). A test of methods for assessing water quality based on diatoms. Verhandlungen der Internationalen Vereinigung fiir theoretische und angewandte Limnologie, 24, 2112–2116.

    Google Scholar 

  • Dickson, K. L., Cairns, J. R., Gregg, B. C., Messenger, D. I., Plafkin, J. L., & Van der Schalie, W. H. (1977). Effects of intermittent chlorination on aquatic organisms and communities. Journal of the Water Pollution Control, 49, 35–44.

    CAS  Google Scholar 

  • Dionex Corporation. (2001). Dionex DX-80 ion analyzer operator’s manual. USA: Dionex Corporation.

    Google Scholar 

  • Dufrêne, M., & Legendre, P. (1997). Species assemblages and indicator species: The need for a flexible asymmetrical approach. Ecological Monograph, 67, 345–366.

    Google Scholar 

  • Duong, T., Coste, M., Feurtet-Mazel, A., Dang, D., Gold, C., Park, Y., et al. (2006). Impact of urban pollution from the Hanoi Area on benthic diatom communities collected from the Red, Nhue and Tolich Rivers (Vietnam). Hydrobiologia, 563, 201–216.

    Article  CAS  Google Scholar 

  • Duong, T. T., Feurtet-Mazel, A., Coste, M., Dang, D. K., & Boudou, A. (2007). Dynamics of diatom colonization processes in some rivers influenced by urban pollution (Hanoi, Vietnam). Ecological Indictors, 7, 839–851.

  • Duong, T. T., Morin, S., Coste, M., Herlory, O., Feurtet-Mazel, A., & Boudou, A. (2010). Experimental toxicity and bioaccumulation of cadmium in freshwater periphytic diatoms in relation with biofilm maturity. Science of the Total Environment, 408, 552–562.

    Article  CAS  Google Scholar 

  • Dupas, F. A., Silva e Souza, A. T., Matsumura-Tundisi, T., Tundisi, J. G., & Röhm, S. A. (2006). Environmental indicators in the planning and management of watersheds. In J. G. Tundis, T. Matsumura-Tundisi, & C. S. Galli (Eds.), Eutrophication in South America: Causes, consequences and technologies for management and control. São Carlos: International Institute of Ecology.

    Google Scholar 

  • Eloranta, P., & Andersson, K. (1998). Diatom indices in water quality monitoring of some South-Finnish rivers. Verhandlungen des Internationale Verein Limnologie, 26, 1213–1215.

    CAS  Google Scholar 

  • European Commission. (2003). Common implementation strategy for the Water Framework Directive (2000/60/EC). Guidance document No 10. Rivers and lakes-topology, reference conditions and classification systems. Produced by Working Group 2.3-REFCOND. Luxembourg: Office for Official Publications of the European Communities.

    Google Scholar 

  • Fisher, J., & Dunbar, M. J. (2007). Towards a representative periphytic diatom sample. Hydrology and Earth System, 11, 399–407.

    Article  Google Scholar 

  • Fitzpatrick, F. A., Waite, I. R., D’arconte, P. J., Meador, M. R., Maupin, M. A., & Gurtz, M. E. (1998). Revised methods for characterizing stream habitat in the National Water-Quality Assessment Program: U.S. Geological Survey Water-Resources Investigations. Report, 98–4052, 67.

    Google Scholar 

  • Fukushima, S., Koichi, Y., & Fukushima, H. (1994). Effects of self-purification on periphytic algal communities. Verhandlungen des Internationale Verein Limnologie, 25, 1966–1970.

    CAS  Google Scholar 

  • Gasse, F., Juggins, S., & Khelifa, L. B. (1995). Diatom-based transfer functions for inferring past hydrochemical characteristics of African lakes. Palaeogeography Palaeoclimatology Palaeoecology, 117, 31–54.

    Article  Google Scholar 

  • Gold, C., Feurte-Mazel, A., Coste, M., & Boudou, A. (2003). Effects of cadmium stress on periphytic diatom communities in indoor artificial streams. Freshwater Biology, 48, 316–328.

    Article  CAS  Google Scholar 

  • Guasch, H., Leira, M., Montuelle, B., Geiszinger, A., Roulier, J. L., Tornes, E., et al. (2009). Use of multivariate analysis to investigate the contribution of metal pollution to diatom species composition: Search for the most appropriate cases and exploratory variables. Hydrobiologia, 627, 143–158.

    Article  CAS  Google Scholar 

  • Guzkowska, M. A. J., & Gasse, F. (1990). Diatoms as indicators of water quality in some English urban lakes. Freshwater Biology, 23, 233–250.

    Article  Google Scholar 

  • Hammer, O., Harper, D. A. T., & Ryan, P. D. (2009). PAST—PAlaeontological STatistics, version 1.90. http://folk.uio.no/ohammer/past.

  • Hutchinson, G. E. (1993). The zoobenthos. A treatise on limnology (Vol. 4). Hoboken: Wiley. 964 pp.

    Google Scholar 

  • John, J. (2000). A guide to diatoms as indicators of urban stream health. LWRRDC Canberra Occasional Paper 14/99 (Urban Sub Program, Report No.7).

  • Jüttner, I., Rothfritz, H., & Ormerod, S. J. (1996). Diatoms as indicators of river quality in the Nepalese Middle Hills with consideration of the effects of habitat-specific sampling. Freshwater Biology, 36, 475–486.

    Article  Google Scholar 

  • Kelly, M. G., & Whitton, B. A. (1995). The trophic diatom index: A new index for monitoring eutrophication in rivers. Journal of Applied Phycology, 7, 433–444.

    Article  Google Scholar 

  • Kelly, M. G., Cazaubon, A., Coring, E., Dell’uomO, A., Ector, L., Goldsmith, B., et al. (1998). Recommendations for the routine sampling of diatoms for water quality assessments in Europe. Journal of Applied Phycology, 10, 215–224.

    Article  Google Scholar 

  • Kilham, P., KIlham, S. S., & Hecky, R. E. (1986). Hypothesized resources relationships among African plankton diatoms. Limnology and Oceanography, 31, 1169–1181.

    Article  Google Scholar 

  • Kitner, M., & Poulí-Čková, A. (2003). Littoral diatoms as indicators for the eutrophication of shallow lakes. Hydrobiologia, 506–509, 519–524.

    Article  Google Scholar 

  • Kobayasi, H., & Mayama, S. (1982). Most pollution tolerant diatoms of severely polluted rivers in the vicinity of Tokyo. Japanese Journal of Phycology, 30, 188–196.

    Google Scholar 

  • Komárek, O., & Sukacová, K. (2004). The use of artificial substrate in different growth conditions. Ekologia Bratilsava, 23, 192–206.

    Google Scholar 

  • Lange-Bertalot, H. (1979). Pollution tolerance of diatoms as criteria for water quality estimation. Nova Hedwigia, 64, 283–304.

    Google Scholar 

  • Licursi, M., & Gómez, N. (2002). Benthic in three diatoms and some environmental conditions lowland streams. Annales de Limnologie, 38, 109–118.

    Article  Google Scholar 

  • Lobo, E. A., Callegaro, V. L. M., Oliveira, M. A., Salomoni, S. E., Schuler, S., & Asai, K. (1995). Pollution tolerant diatoms from lotic systems in the Jacuí Basin, Rio Grande do Sul, Brasil. Iheringia Série Botânica, 47, 45–72.

    Google Scholar 

  • Lobo, E. A., Callegaro, V. L. M., Oliveira, M. A., Salomoni, S. E., Schuler, S., & Asai, K. (1996). Pollution tolerant diatoms from lotic systems in the Jacui Basin, Rio Grande do Sul, Brasil. Iheringia Série Botânica, 47, 45–72.

    Google Scholar 

  • Lobo, E. A., Callegaro, V. L. & Bender, P. (2002) Utilização de algas diatomáceas epilíticas como indicadoras da qualidade da água em rios e arroios da Região Hidrográfica do Guaíba, RS, EDUNISC, Santa Cruz do Sul, Brasil

  • Lobo, E. A., Callegaro, V. L., Hermany, G., Bes, D., Wetzel, C. E., & Oliveira, M. A. (2004). Use of epilithic diatoms as bioindicator from lotic systems in southern Brazil, with special emphasis on eutrophication. Acta Limnologica Brasiliensis, 16, 25–40.

    Google Scholar 

  • Loez, C. R., & Topalian, M. L. (1999). Use of algae for monitoring rivers in Argentina with a special emphasis for Reconquista River (region of Buenos Aires). In J. Prygiel, B. A. Whitton, & J. Bukowska (Eds.), Use of algae for monitoring rivers III (pp. 72–83). Douai: Agence de l’Eau Artois-Picardie.

    Google Scholar 

  • Lowe, R. L., & Pan, Y. (1996). Benthic algal communities as biological indicators. In R. J. Stevenson, M. L. Bothwell, & R. L. Lowe (Eds.), Algal ecology. Freshwater benthic ecosystems (pp. 705–739). San Diego: Academic.

    Google Scholar 

  • Metzeltin, D., & lange-Bertalot, H. (2007). Tropical diatoms of South America II. Iconographia Diatomologica, 18, 1–877.

    Google Scholar 

  • Metzeltin, D., Lange-Bertalot, H., & García-Rodríguez, F. (2005). Diatoms of Uruguay (Iconographia Diatomologica, Vol. 15, pp. 1–736). Koenigstein: Koeltz Scientific Books.

    Google Scholar 

  • Morin, S., Duong, T. T., Dabrin, A., Coynel, A., Herlory, O., Baudrimont, M., et al. (2008). Long-term survey of heavy-metal pollution, biofilm contamination and diatom community structure in the Riou Mort watershed, South-West France. Environmental Pollution, 151, 532–542.

    Article  CAS  Google Scholar 

  • Oliveira, M. A., Torgan, L. C., Lobo, E. A., & Scharzbold, A. (2001). Association of periphytic diatom species of artificial substrate in lotic environments in the Arroio Sampaio basin, RS, Brazil: Relationships with abiotic variables. Brazilian Journal of Biology, 6, 523–540.

    Google Scholar 

  • Palmer, M. (2008). Ordination methods for ecologists. http://ordination.okstate.edu/.

  • Pan, Y., Stevenson, R. J., Hill, B. H., Herlihy, A. T., & Collins, G. B. (1996). Using diatoms as indicators of ecological conditions in lotic systems: A regional assessment. Journal of the North American Benthological Society, 15, 481–495.

    Article  Google Scholar 

  • Pappas, J. L., & Stoermer, E. F. F. (1996). Quantitative method for determining a representative algal sample count. Journal of Phycology, 32, 693–696.

    Article  Google Scholar 

  • Patrick, R., & Hendrickson, J. (1993). Factors to consider in interpreting diatom changes. Nova Hedwigia Beihelf, 106, 361–377.

    Google Scholar 

  • Pinto, P., Rosado, J., Morais, M., & Antunes, I. (2005). Assessment methods for southern siliceous basins in Portugal. Hydrobiologia, 516, 191–214.

    Article  Google Scholar 

  • Platts, W. S., Megahan, W. F., & Minshall, W. G. (1983). Methods for evaluating stream, riparian, and biotic conditions. General Technical Report INT-138. Ogden: USDA Forest Service, Rocky Mountain Research Station.

    Google Scholar 

  • Porter, S. D., Cuffney, T. F., Gurtz, M. E., & Meador, M. R. (1993) Methods for collecting algal samples as part of the National Water-Quality Assessment Program. US Geological Survey Open-File Report 93-409. US Geological Survey, Raleigh, North Carolina. http://water.usgs.gov/nawqa/protocols/OFR-93–409.

  • Potapova, M., & Charles, D. F. (2003). Distribution of benthic diatoms in US rivers in relation to conductivity and ionic composition. Freshwater Biology, 48, 1311–1328.

    Article  CAS  Google Scholar 

  • Potapova, M., & Charles, D. F. (2005). Choice of substrate in algae-based water quality assessment. Journal of the North American Benthological Society, 24, 415–427.

    Article  Google Scholar 

  • Potapova, M. G., Charles, D. F., Ponader, K. C., & Winter, D. M. (2004). Quantifying species indicator values for trophic diatom indices: a comparison of approaches. Hydrobiologia, 517, 25–41.

    Article  Google Scholar 

  • Prygiel, J., Whitton, B. A., & Bukowska, J. (1999). Use of algae for monitoring rivers III. Douai: Agence de L’Eau Artois-Picardie.

    Google Scholar 

  • Rörig, L. R., Tundisi, J. G., Schettini, C. A. F., Pereira-Filho, J., Menezes, J. T., Almeida, T. C. M., et al. (2007). From a water resource to a point pollution source: The daily journey of a coastal urban stream. Brazilian Journal of Biology, 67, 597–609.

    Article  Google Scholar 

  • Rothfritz, H., Juttner, I., Suren, A. M., & Ormerod, S. J. (1997). Epiphytic and epilithic diatom communities along environmental gradients in the Nepalese Himalaya: Implications for the assessment of biodiversity and water quality. Archive für Hydrobiol, 138, 465–482.

    Google Scholar 

  • Rott, E., Duthie, H. C., & Pipp, E. (1998). Monitoring organic pollution and eutrophication in the Grand River, Ontario, by means of diatoms. Canadian Journal of Fisheries and Aquatic Science, 55, 1443–1453.

    Article  CAS  Google Scholar 

  • Round, F. E. (1991). Diatoms in river water-monitoring studies. The Journal of Applied Psychology, 3, 129–145.

    Google Scholar 

  • Salomoni, S. E., Rocha, O., Callegaro, V. L., & Lobo, E. A. (2006). Epilithic diatoms as indicators of water quality in the Gravataí river, Rio Grande do Sul, Brazil. Hydrobiologia, 559, 233–246.

    CAS  Google Scholar 

  • Schoeman, F. R. (1979). Diatoms as indicators of water quality in the upper Hennops River. Journal of the Limnological Society of Southern Africa, 5, 73–78.

    CAS  Google Scholar 

  • Soinine, J., & Eloranta, P. (2004). Seasonal persistence and stability of diatom communities in rivers: Are there habitat specific differences? European Journal of Psychology, 39, 153–160.

    Google Scholar 

  • Stevenson, R. J., & Pan, Y. (1999). Assessing environmental conditions in rivers and streams with diatoms. In E. F. Stoermer & J. P. Smol (Eds.), The diatoms: Applications for the environmental and earth sciences (pp. 11–40). Cambridge: Cambridge University Press.

    Google Scholar 

  • Taylor, C. J., Prygiel, A. V., De La Rey, P. A., & Van Rensburg, S. (2007). Can diatom-based pollution indices be used for biological monitoring in SA? A case study of the Crocodile West and Marico water management area. Hydrobiologia, 592, 455–464.

    Article  Google Scholar 

  • Ter Braak, C. J. F., & Prentice, I. C. (1988). A theory of gradient analysis. Advances in Ecological Research, 18, 271–317.

    Article  Google Scholar 

  • Ter Braak, C. J. F., & Verdonschot, P. F. M. (1995). Canonical correspondence analysis and related multivariate methods in aquatic ecology. Aquatic Science, 37, 130–137.

    Google Scholar 

  • Van Dam, H., Mertens, A., & Sinkeldam, J. (1994). A coded checklist and ecological indicator values of freshwater diatoms from the Netherlands. Aquatic Ecology, 28(117), 133.

    Google Scholar 

  • Wetzel, R. G. (1983). Attached algal–substrata interactions: Fact or myth, and when and how? In R. G. Wetzel (Ed.), Periphyton of freshwater ecosystems (pp. 207–215). The Hague: Dr W. Junk.

    Google Scholar 

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Acknowledgements

This study was made possible by the provision of funds from the Third World Academy of Science through the Conselho Nacional de Desenvolvimento Científico e Tecnológico. I am greatly indebted to my supervisor, Professor José Galizia Tundisi, for his critical remarks on earlier drafts of this work. I also wish to thank the Insttituto Internacional de Ecologia and staff for their support during the course of this study.

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Bere, T., Tundisi, J.G. The Effects of Substrate Type on Diatom-Based Multivariate Water Quality Assessment in a Tropical River (Monjolinho), São Carlos, SP, Brazil. Water Air Soil Pollut 216, 391–409 (2011). https://doi.org/10.1007/s11270-010-0540-8

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