Abstract
In Indian population, hepatitis C virus (HCV) genotypes 1 and 3 are prevalent and predominant with the highest frequency. However, other genotypes are seldom reported, and among them the HCV genotype 5a is exceptionally rare. The presented case had no history for either blood transfusion or using any type of IV drugs and never traveled to any other country. He was serologically positive with HCV antibodies and HCV RNA. 5′UTR-specific amplification and sequencing of infected viral genome confirmed that he had been infected with HCV genotype 5a which is not closely related to other common prevalent genotypes like 1a, 1b, 3a, and 3b in India. Patient’s wife and children tested negative for anti-HCV and HCV-RNA. This unique case report could be attributed to circulation of HCV genotype 5a from other geographic area at very low frequency in India as determined by phylogenetic analysis and nucleic acid-sequencing methods.
References
V. Jannick, P.L. Helene, R.S. Ross, A. Armand, N. Frederik, V.M. Schalk et al., J. Clinic. Virol. 41, 170–171 (2008)
F.S. Nolte, A.M. Green, K.R. Fiebelkorn, A.M. Caliendo, C. Sturchio, A. Grunwald et al., J. Clin. Microbiol. 41, 1558–1564 (2003)
F. Davidson, P. Simmonds, J.C. Ferguson, L.M. Jarvis, B.C. Dow, E.A.C. Follett et al., J. Gen. Virol. 76, 1197–1204 (1995)
J.E. Levi, D.T. Takaoka, R.H. Garrini, R.M. Fachini, R. Focaccia, E. Santos et al., J. Clin. Microbiol. 40, 2645–2647 (2002)
D. Murphy, B. Willems, G. Delage, J. Infect. Dis. 169, 473–475 (1994)
R.S. Ross, S. Viazov, K. Renzing, M. Roggendorf, J. Med. Virol. 60, 122–125 (2000)
R. Jover, J. Perez-Serra, F. de Vera, J.M. Alamo, C. Munoz, C. Yago et al., Americ. J. Gastroenterol. 96, 3042 (2001)
C. Henquell, C. Cartau, A. Abergel, H. Lauricesse, C. Regagnon, C. De Champs et al., J. Clin. Microbiol. 42, 3030–3035 (2004)
J. Verbeeck, P. Maes, P. Lemey, O.G. Pybus, E. Wollants et al., J. Virol. 80, 4220–4226 (2006)
Y.D. Chen, M.Y. Liu, W.L. Yu, J.Q. Li, M. Peng, Q. Dai et al., HBPD Int. 1, 541–552 (2002)
T. Ohno, M. Mizokami, R.R. Wu et al., J. Clin. Microbiol. 35, 201–207 (1997)
C. Bonny, C. Roche, K. Randl, S. Ughetto, C. Henquell, N. Martineau et al., Hepatology 38, A75 (2003)
S. Attaullah, S. Khan, L. Ali, Virol. J. 8, 433 (2011)
B.S. Das, J.K. Patnaik, S. Mohanty, S.K. Mishra, D. Mohanty, S.K. Satpathy et al., Ameriac. J. Trop. Med. Hyg. 49, 720–725 (1993)
Muhammad Idrees, Sheikh Riazuddin, BMC Gastroenterol. 9, 5 (2009)
M. Gerotto, D.G. Sullivan, J. Stephen et al., J. Virol. 73, 7241–7247 (1999)
S.J. Zuberi, A. Arif, J. Pak. Med. Assoc. 52, 218–219 (2002)
N. Ansari, A. Ahmed, J. Esmail, S.A. Mujeeb, J. Pak. Med. Assoc. 52, 219–220 (2002)
M. Idress, S. Riazuddin, BMC Inf. Dis. 8, 69 (2008)
A.A. Akhund, K.R. Shaikh, S.Q.H. Naqvi, M. Kamal, J. Med. Sci. 6(2), 93–97 (2008)
S. Butt, M. Idress, H. Akbar, I.U. Rehman, Z. Awan, S. Afzal, A. Hussain, M. Sahid, S. Mazoor, S. Rafique, Inf. Gen. Evol. 10(5), 595–600 (2010)
S.T. Hakim, S. Noorali, M. Ashby, A. Bagasra, S.U. Kazmi, O. Bagasra, BJMP 3(3), a335 (2010)
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We thank Mr. Sandeep Kumar Vishwakarma and Ramachandra Rao V V for their valuable support in manuscript preparation and correction.
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The protocol in the study was approved by the Institutional Ethics Committee of the Deccan College of Medical Sciences, the Centre for Liver Research & Diagnostics, Santosh Nagar, Hyderabad.
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Syed, R., Satti, V.P., Habeeb, A. et al. Identification of rare hepatitis C virus genotype 5a among Indian population. Virus Genes 47, 152–155 (2013). https://doi.org/10.1007/s11262-013-0905-3
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DOI: https://doi.org/10.1007/s11262-013-0905-3