Skip to main content
SpringerLink
Log in

Characterization of a new begomovirus and a beta satellite associated with the leaf curl disease of French bean in northern India

  • Published:
Virus Genes Aims and scope Submit manuscript

Abstract

Begomoviruses are emerging as serious threat to many crops throughout the world particularly in tropical and sub-tropical regions. A leaf curl disease with symptoms typical of infection by many begomoviruses was observed in French bean (Phaseolus vulgaris) at Kanpur, India, during 2010–2012. The disease caused downward leaf curling and made the plants unproductive. The disease was transmitted from infected to healthy plants through whitefly (Bemisia tabaci). The products of five samples digested with EcoRI yielded DNA fragments of about 2.7 kb. The complete sequence of the Fb1 sample comprised 2,741 nucleotides with genome organization typical of begomoviruses having two ORFs in virion-sense and five ORFs in complementary-sense separated by an intergenic region with begomovirus conserved nonanucleotide sequence, TAATATTAC. The complete DNA-A sequence homology was most closely related to Cotton leaf curl Bangalore virus with 80 % nucleotide sequence identity. Based on the demarcation criteria for identifying a begomovirus species, Fb1 is considered as a distinct begomovirus species, named French bean leaf curl virus and designated as FbLCV-[IN:Knp:12]. The complete sequence of associated satellite DNA-β comprises 1,379 nucleotides with single ORF and has 80 % identity with Papaya leaf curl beta satellite. There was no evidence of recombination in DNA-A of FbLCV and associated beta satellite DNA molecule.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  1. C.M. Fauquet, R.W. Briddon, J.K. Brown, E. Moriones, J. Stanley, M. Zerbini, X. Zhou, Arch. Virol. 153, 783–821 (2008). doi:10.1007/s00705-008-0037-6

    Article  PubMed  CAS  Google Scholar 

  2. A.K. Singh, B. Chattopadhyay, P.K. Pandey, A.K. Singh, S. Chakraborty, Plant Dis. 91, 1053 (2007). doi:10.1094/PDIS-91-8-1053B

    Article  Google Scholar 

  3. A.K. Singh, B. Chattopadhyay, S. Chakraborty, Virol. J. 9, 43 (2012). doi:10.1186/1743-422X-9-43

    Article  PubMed  CAS  Google Scholar 

  4. Y. Kumar, V. Hallan, A.A. Zaidi, Virus Genes 37, 425–431 (2008). doi:10.1007/s11262-008-0298-x

    Article  PubMed  CAS  Google Scholar 

  5. P. Kumari, A.K. Singh, B. Chattopadhyay, S. Chakraborty, Virus Res. 152, 19–29 (2010). doi:10.1016/j.virusres.2010.05.015

    Article  PubMed  CAS  Google Scholar 

  6. P. Pandey, S. Mukhopadhya, A.R. Naqvi, S.K. Mukherjee, G.S. Shekhawat, N.R. Choudhury, Virol. J. 7, 337 (2010). doi: 10.1186/1743-422X-7-337

  7. M.K. Singh, K. Singh, Q.M. Haq, B. Mandal, A. Varma, Virus Genes 43, 296–306 (2011). doi:10.1007/s11262-011-0631-7

    Article  PubMed  CAS  Google Scholar 

  8. A. Varma, V.G. Malathi, Ann. Appl. Biol. 142, 145–164 (2003). doi:10.1111/j.1744-7348.2003.tb00240.x

    Article  CAS  Google Scholar 

  9. M.R. Rojas, C. Hagen, W.J. Lucas, R.L. Gibertson, Annu. Rev. Phytopathol. 43, 361–394 (2005). doi:10.1146/annurev.phyto.43.040204.135939

    Article  PubMed  CAS  Google Scholar 

  10. S.E. Seal, van-den F. Bosch, M.J. Jeger. Crit. Rev. Plant Sci. 25, 23–46 (2006). doi:10.1080/07352680500365257

    Article  Google Scholar 

  11. V.G. Malathi, P. John, in Characterization, Diagnosis and Management of Plant Viruses—Vegetables and Pulses Crops, ed. by G.P. Rao, P. Lava Kumar, R.J. Holguin-Pena (Studium Press LLC, Houston, 2008), pp. 97–123

  12. J. Laufs, I. Jupin, C. David, S. Schumacher, F. Heyraud-Nitschke, B. Gronenborn, Biochimie 77, 765–773 (1995). doi:10.1016/0300-9084(96)88194-6

    Article  PubMed  CAS  Google Scholar 

  13. G. Sunter, M.D. Hartitz, S.G. Hormudzi, C.L. Brough, D.M. Bisaro, Virology 179, 69–77 (1990). doi:10.1016/0042-6822(90)90275-V

    Article  PubMed  CAS  Google Scholar 

  14. S.G. Lazarowitz, R.J. Shephard, Crit. Rev. Plant Sci. 11, 327–349 (1992). doi:10.1080/07352689209382350

    CAS  Google Scholar 

  15. W.D.O. Hamilton, D.M. Bisaro, R.H.A. Coutts, K.W. Buck, Nucleic Acids Res. 11, 7387–7396 (1983). doi:10.1093/nar/11.21.7387

    Article  PubMed  CAS  Google Scholar 

  16. J. Stanley, Nature 305, 643–645 (1983). doi:10.1038/305643a0

    Article  CAS  Google Scholar 

  17. N. Navot, E. Pichersky, M. Zeidan, D. Zamir, H. Czosnek, Virology 185, 151–161 (1991). doi:10.1016/0042-6822(91)90763-2

    Article  PubMed  CAS  Google Scholar 

  18. I.B. Dry, J.E. Rigden, L.R. Krake, P.M. Mullineax, M.A. Rezaian, J. Gen. Virol. 74, 147–151 (1993). doi:10.1099/0022-1317-74-1-147

    Article  PubMed  CAS  Google Scholar 

  19. D.M. Bisaro, in DNA Replication in Eukaryotic Cells, ed. by M.L. Depamphilis (Cold Spring Harbor Monograph Series-Book 31, 1994), pp. 833–854

  20. J. Jose, R. Usha, Virology 305, 310–317 (2003). doi:10.1006/viro.2002.1768

    Article  PubMed  CAS  Google Scholar 

  21. X. Cui, X. Tao, Y. Xie, C.M. Fauquet, X. Zhou, J. Virol. 78, 13966–13974 (2004). doi:10.1128/JVI.78.24.13966-13974.2004

    Article  PubMed  CAS  Google Scholar 

  22. R.W. Briddon, S. Mansoor, I.D. Bedford, M.S. Pinner, K. Saunders, J. Stanley, Y. Zafar, K. Malik, P.G. Markham, Virology 285, 234–243 (2001). doi:10.1006/viro.2001.0949

    Article  PubMed  CAS  Google Scholar 

  23. T. Kon, M.R. Rojas, I.K. Abdourhamane, R.L. Gilbertson, J. Gen. Virol. 90, 1001–1013 (2009). doi:10.1099/vir.0.008102-0

    Article  PubMed  CAS  Google Scholar 

  24. R.W. Briddon, S.E. Bull, I. Amin, A.M. Idris, S. Mansoor, I.D. Bedford, P. Dhawan, N. Rishi, S.S. Siwatch, A.M. Abdel-Salam, J.K. Brown, Y. Zafar, P.G. Markham, Virology 312, 106–121 (2003). doi:10.1016/S0042-6822(03)00200-9

    Article  PubMed  CAS  Google Scholar 

  25. L. Liu, T. van Tonder, G. Pietersen, J.W. Davies, J. Stanley, J. Gen. Virol. 78, 2113–2117 (1997)

    Google Scholar 

  26. A.M. Idris, E. Hiebert, J. Bird, J.K. Brown, Phytopathology 93, 774–783 (2003). doi:10.1094/PHYTO.2003.93.7.774

    Article  PubMed  CAS  Google Scholar 

  27. J.K. Brown, M.R. Nelson, Plant Dis. 72, 866–869 (1988). doi:10.1094/PD-72-0866

    Article  Google Scholar 

  28. J.K. Brown, K.M. Ostrow, A.M. Idris, D.C. Stenger, Phytopathology 90, 546–552 (2000). doi:10.1094/PHYTO.2000.90.5.546

    Article  PubMed  CAS  Google Scholar 

  29. J.K. Brown, M.R. Nelson, R.C. Lambe, Plant Dis. 70, 981 (1986). doi:10.1094/PD-70-981b

    Article  Google Scholar 

  30. J. Navas-Castillo, S. Sánchez-Campos, J.A. Díaz, E. Sáez-Alonso, E. Moriones, Plant Dis. 83, 29–32 (1999). doi:10.1094/PDIS.1999.83.1.29

    Article  Google Scholar 

  31. L.C. Papayiannis, A. Paraskevopoulos, N.I. Katis, Plant Dis. 91, 465 (2007). doi:10.1094/PDIS-91-4-0465C

    Article  Google Scholar 

  32. P. Singh-Pant, P. Pant, S.K. Mukherjee, S. Mazumdar-Leighton, Arch. Virol. 157, 1217–1232 (2012). doi:10.1007/s00705-012-1287-x

    Article  PubMed  CAS  Google Scholar 

  33. V. Venkataravanappa, C.N.L. Reddy, S. Jalali, K.M. Reddy, Virus Genes 44, 522–535 (2012). doi:10.1007/s11262-012-0732-y

    Article  PubMed  CAS  Google Scholar 

  34. B. Mandal, A. Varma, V.G. Malathi, J. Phytopathol. 145, 505–510 (1997). doi:10.1111/j.1439-0434.1997.tb00358.x

    Article  Google Scholar 

  35. S.K. Raj, M.S. Khan, R. Singh, Plant. Pathol. 54, 809 (2005). doi:10.1111/j.1365-3059.2005.01219.x

    Article  Google Scholar 

  36. K.S. Usharani, B. Surendranath, Q.M.R. Haq, V.G. Malathi, Curr. Sci. 86, 845–850 (2004)

    CAS  Google Scholar 

  37. V. Hallan, S. Saxena, B.P. Singh, World J. Microb. Biotechnol. 14, 931–932 (1998). doi:10.1023/A:1008833208973

    Article  Google Scholar 

  38. A.A. Khan, Q.A. Naqvi, M.S. Khan, R. Singh, S.K. Raj, Plant Pathol. 54, 569 (2005). doi:10.1111/j.1365-3059.2005.01220.x

    Article  Google Scholar 

  39. V.R. Kumar, A.K. Singh, S. Chakraborty, New Dis. Rep. 25, 20 (2012). doi:10.5197/j.2044-0588.2012.025.020

    Article  Google Scholar 

  40. B. Chattopadhyay, A.K. Singh, T. Yadav, C.M. Fauquet, N.B. Sarin, S. Chakraborty, Arch. Virol. 153, 533–539 (2008). doi:10.1007/s00705-007-0017-2

    Article  PubMed  CAS  Google Scholar 

  41. N. Kirthi, C.G.P. Priyadarshini, P. Sharma, S.P. Maiya, V. Hemalatha, P. Sivaraman, P. Dhawan, N. Rishi, H.S. Savithri, Arch. Virol. 149, 2047–2057 (2004). doi:10.1007/s00705-004-0352-5

    PubMed  CAS  Google Scholar 

  42. A. Chatterjee, S.K. Ghosh, Virus Genes 35, 835–844 (2007). doi:10.1007/s11262-007-0160-6

    Article  PubMed  CAS  Google Scholar 

  43. M. Paximadis, V. Muniyappa, M.E.C. Rey, Ann. Appl. Bio. 139, 101–109 (2001). doi:10.1111/j.1744-7348.2001.tb00134.x

    Article  CAS  Google Scholar 

  44. R.W. Briddon, S.E. Bull, S. Mansoor, I. Amin, P.G. Markham, Mol. Biotechnol. 20, 315–318 (2002). doi:10.1385/MB:20:3:315

    Article  PubMed  CAS  Google Scholar 

  45. K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei, S. Kumar, Mol. Biol. Evol. 28(10), 2731–2739 (2011). doi:10.1093/molbev/msr121

    Article  PubMed  CAS  Google Scholar 

  46. Y.H. Ji, Z.D. Cai, X.W. Zhou, Y.M. Liu, R.Y. Xiong, T.M. Zhao, W.G. Yu, X. Tao, Y.J. Zhou, Plant Dis. (2012). doi:10.1094/PDIS-03-12-0258-PDN

    Google Scholar 

  47. J.H. Dong, Y.Q. Luo, M. Ding, Z.K. Zhang, C.K. Yang, Plant Pathol. 56, 342 (2007). doi:10.1111/j.1365-3059.2007.01472.x

    Article  Google Scholar 

  48. K.K. Biswas, A. Varma, Indian Phytopathol. 54, 240–245 (2001)

    Google Scholar 

  49. S. Mansoor, R.W. Briddon, Y. Zafar, J. Stanley, Trends Plant Sci. 8, 128–134 (2003). doi:10.1016/S1360-1385(03)00007-4

    Article  PubMed  CAS  Google Scholar 

  50. R.W. Briddon, J.K. Brown, E. Moriones, J. Stanley, M. Zerbini, X. Zhou, C.M. Fauquet, Arch. Virol. 153, 763–781 (2008). doi:10.1007/s00705-007-0013-6

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

Authors express their sincere thanks to Dr. N. Nadarajan, Director, Indian Institute of Pulses Research, Kanpur for providing the necessary facilities and his constant encouragement.

Author information

Authors and Affiliations

  1. Division of Crop Protection, Indian Institute of Pulses Research, Kanpur, 208024, India

    Naimuddin Kamaal, Mohammad Akram & Prashant Yadav

  2. Division of Crop Improvement, Indian Institute of Pulses Research, Kanpur, 208024, India

    Aditya Pratap

Authors
  1. Naimuddin Kamaal
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Mohammad Akram
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Aditya Pratap
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. Prashant Yadav
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding author

Correspondence to Mohammad Akram.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Kamaal, N., Akram, M., Pratap, A. et al. Characterization of a new begomovirus and a beta satellite associated with the leaf curl disease of French bean in northern India. Virus Genes 46, 120–127 (2013). https://doi.org/10.1007/s11262-012-0832-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11262-012-0832-8

Keywords

Search

Navigation