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Complete sequence of an Apple stem grooving virus (ASGV) isolate from China

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Abstract

The complete genome sequence of a Chinese isolate of Apple stem grooving virus (ASGV) was determined to be 6,495 nucleotides long, single-stranded, plus-sense RNA. The viral RNA has two overlapping open reading frames (ORFs): ORF1 and ORF2. Compared with the genome sequences of ASGV isolates available in GenBank, the nucleotide identities ranged from 80.1 to 86.3 %. The amino acid identities of proteins encoded by ORF1 and ORF2 ranged from 79.5 to 86.1 % and 82.0 to 85.9 %, respectively.

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References

  1. I. Management, Apple stem grooving virus. The Universal Virus Database, version 4. (ICTVdB, 2006), http://www.ncbi.nlm.nih.gov/ICTVdb/ICTVdB/00.056.0.06.001.htm

  2. A.I. Campbell, J. Hortic. Sci. Biotechnol. 38, 15–19 (1963)

    Google Scholar 

  3. C.J. Desvigens, R. Boye, D. Cornaggia, N. Grasseru, Maladies a virus des arbres fruitiers, vol. 127 (Ctifl, Paris, 1990)

    Google Scholar 

  4. N. Inouye, T. Maeda, K. Mitsuhata, Ann. Phytopathol. Soc. Jpn. 45, 712–720 (1979)

    Article  Google Scholar 

  5. O. Lovisolo, G.P. Accotto, V. Masenga, A. Colariccio, Fitopatol. Bras. 28, 54–58 (2003)

    Article  Google Scholar 

  6. H. Magome, N. Yoshikawa, T. Takahashi, T. Ito, T. Miyakawat, Mol. Plant Pathol. 87(4), 389–396 (1997)

    CAS  Google Scholar 

  7. X.F. Wang, Q.B. Li, R. Wang, Acta Microbiol. Sin. 32(2), 137–144 (1992). (in Chinese)

    Google Scholar 

  8. M.J. Adams, T. Candresse, J. Hammond, J.F. Kreuze, G.P. Martelli, S. Namba, M.N. Pearson, K.H. Ryu, P. Saldarelli, N. Yoshikawa, Family Betaflexiviridae, in Virus Taxonomy. Ninth Report of the International Committee on Taxonomy of Viruses, ed. by A.M.Q. King, M.J. Adams, E.B. Carstend, E.J. Lefkowitz (Elsevier/Academic Press, Amsterdam, 2012), pp. 920–941

    Google Scholar 

  9. K. Ohira, S. Namba, M. Rozanov, T. Kusumi, T. Tsuchizaki, J. Gen. Virol. 76, 2305–2309 (1995)

    Article  PubMed  CAS  Google Scholar 

  10. K. Tamura, J. Dudley, M. Nei, S. Kumar, Mol. Biol. Evol. 24(8), 1596–1599 (2007)

    Article  PubMed  CAS  Google Scholar 

  11. N. Yoshikawa, E. Sasaki, M. Kato, T. TakahaSttl, Virology 191, 98–105 (1992)

    Article  PubMed  CAS  Google Scholar 

  12. H. Terauchi, H. Magome, N. Yoshikawa, T. Tkahashi, N. Inouye, Ann. Phytopathol. Soc. Jpn. 63, 432–436 (1997)

    Article  CAS  Google Scholar 

  13. H. Shim, Y. Min, S. Hong, M. Kwon, D. Kim, H. Kim, Y. Choi, S. Lee, J. Yang, Mol. Cells 18(2), 192–199 (2004)

    PubMed  CAS  Google Scholar 

  14. S. Tatineni, M.R. Afunian, S. Gowda, M.E. Hilf, M. Bar-Joseph, W.O. Dawson, Virology 385(2), 521–528 (2009)

    Article  PubMed  CAS  Google Scholar 

  15. Y. Zhao, J.X. Niu, Acta Hortic. Sin. 35(4), 493–500 (2008). (in Chinese)

    CAS  Google Scholar 

  16. H.K. Shim, K.H. Hwang, C.K. Shim, S.W. Son, D. Kim, Y.M. Choi, Y. Chung, D.H. Kim, H.J. Jee, S.C. Lee, Plant Pathol. J. 22(3), 260–264 (2006)

    Article  Google Scholar 

  17. N.J. Knowles, T. Hovi, T. Hyypiä, A.M.Q. King, M. Lindberg, M.A. Pallansch, A.C. Palmenberg, P. Simmonds, T. Skern, G. Stanway, T. Yamashita, R. Zell, Picornaviridae, in Virus Taxonomy: Classification and Nomenclature of Viruses: Ninth Report of the International Committee on Taxonomy of Viruses, ed. by A.M.Q. King, M.J. Adams, E.B. Carstens, E.J. Lefkowitz (Elsevier, San Diego, 2011), pp. 855–880

    Google Scholar 

  18. C.K. Hjulsager, B.S. Olsen, D.M.K. Jensen, M.I. Cordea, B.N. Krath, I.E. Johansen, O.S. Lund, Virology 355, 52–61 (2006)

    Article  PubMed  CAS  Google Scholar 

  19. P. Saenz, M.T. Cervera, S. Dallot, L. Quiot, J.-B. Quiot, J.L. Riechmann, J.A. Garcıa, J. Gen. Virol. 81, 557–566 (2000)

    PubMed  CAS  Google Scholar 

Download references

Acknowledgments

We thank Professor Baozhong Meng of University of Guelph for revisions and suggestions to the manuscript. The study was supported by the National High-tech R&D Program of China (No. 2012AA101504) and the 111 Project from the Education Ministry of China (No. B07049).

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Correspondence to Yunfeng Wu.

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Zhao, L., Hao, X., Liu, P. et al. Complete sequence of an Apple stem grooving virus (ASGV) isolate from China. Virus Genes 45, 596–599 (2012). https://doi.org/10.1007/s11262-012-0799-5

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