Virus Genes

, Volume 41, Issue 2, pp 224–230 | Cite as

The genome sequence of an H11N2 avian influenza virus from a Thick-billed Murre (Uria lomvia) shows marine-specific and regional patterns of relationships to other viruses

  • Alissa Granter
  • Michelle Wille
  • Hugh Whitney
  • Gregory J. Robertson
  • Davor Ojkic
  • Andrew S. Lang
Article

Abstract

Influenza A viruses infect a range of host species, including various mammals and more than 100 species of birds. For avian influenza viruses (AIV), prevalence varies between different groups of birds, with waterfowl showing the highest prevalence. We have sequenced the complete genome of A/Thick-billed Murre/Newfoundland/031/2007(H11N2), an AIV identified in the pelagic seabird, Thick-billed Murre (Uria lomvia). This represents the first complete genome sequence of an AIV from this host species, and only the second complete genome sequence from a seabird in the alcid group. All of the virus segments fall within the American avian lineage. Several of the segments show a close relationship to AIV identified in other marine host species, and also a strong geographic association with other AIV sequences from the northeastern coast of North America from recent years. The identification of this virus, and the growing number of AIV identified in seabird species, indicates these marine birds could be underappreciated host species. This has potential consequences for global influenza dynamics because of the seasonal distributions and migratory patterns of this group of birds.

Keywords

Influenza Genome Seabird Murre Phylogeny 

Supplementary material

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References

  1. 1.
    P.C. Crawford, E.J. Dubovi, W.L. Castleman, I. Stephenson, E.P.J. Gibbs, L. Chen, C. Smith, R.C. Hill, P. Ferro, J. Pompey, R.A. Bright, M.-J. Medina, I.G. Group, C.M. Johnson, C.W. Olsen, N.J. Cox, A.I. Klimov, J.M. Katz, R.O. Donis, Science 310, 482–485 (2005)CrossRefPubMedGoogle Scholar
  2. 2.
    T. Kuiken, G. Rimmelzwaan, D. van Riel, G. van Amerongen, M. Baars, R. Fouchier, A. Osterhaus, Science 306, 241 (2004)CrossRefPubMedGoogle Scholar
  3. 3.
    R.G. Webster, W.J. Bean, O.T. Gorman, T.M. Chambers, Y. Kawaoka, Microbiol. Rev. 56, 152–179 (1992)PubMedGoogle Scholar
  4. 4.
    D.J. Alexander, W.H. Allan, D. Parsons, G. Parsons, Res. Vet. Sci. 24, 242–247 (1978)PubMedGoogle Scholar
  5. 5.
    D.J. Alexander, G. Parsons, R.J. Manvell, Avian Pathol. 15, 647–662 (1986)CrossRefPubMedGoogle Scholar
  6. 6.
    J. Keawcharoen, D. van Riel, G. van Amerongen, T. Bestebroer, W.E. Beyer, R. van Lavieren, A.D.M.E. Osterhaus, R.A.M. Fouchier, T. Kuiken, Emerg. Infect. Dis. 14, 600–607 (2008)CrossRefPubMedGoogle Scholar
  7. 7.
    N. Gaidet, G. Cattoli, S. Hammoumi, S.H. Newman, W. Hagemeijer, J.Y. Takekawa, J. Cappelle, T. Dodman, T. Joannis, P. Gil, I. Monne, A. Fusaro, I. Capua, S. Manu, P. Micheloni, U. Ottosson, J.H. Mshelbwala, J. Lubroth, J. Domenech, F. Monicat, PLoS Pathog. 4, e1000127 (2008)CrossRefPubMedGoogle Scholar
  8. 8.
    G.M. Jenkins, A. Rambaut, O.G. Pybus, E.C. Holmes, J. Mol. Evol. 54, 156–165 (2002)CrossRefPubMedGoogle Scholar
  9. 9.
    W.J. Bean, N.J. Cox, A.P. Kendal, Nature 284, 638–640 (1980)CrossRefPubMedGoogle Scholar
  10. 10.
    V.G. Dugan, R. Chen, D.J. Spiro, N. Sengamalay, J. Zaborsky, E. Ghedin, J. Nolting, D.E. Swayne, J.A. Runstadler, G.M. Happ, D.A. Senne, R. Wang, R.D. Slemons, E.C. Holmes, J.K. Taubenberger, PLoS Pathog. 4, e1000076 (2008)CrossRefPubMedGoogle Scholar
  11. 11.
    A.V. Koehler, J.M. Pearce, P.L. Flint, J.C. Franson, H.C. Ip, Mol. Ecol. 17, 4754–4762 (2008)CrossRefPubMedGoogle Scholar
  12. 12.
    J.C. Obenauer, J. Denson, P.K. Mehta, X. Su, S. Mukatira, D.B. Finkelstein, X. Xu, J. Wang, J. Ma, Y. Fan, K.M. Rakestraw, R.G. Webster, E. Hoffmann, S. Krauss, J. Zheng, Z. Zhang, C.W. Naeve, Science 311, 1576–1580 (2006)CrossRefPubMedGoogle Scholar
  13. 13.
    B. Olsen, V.J. Munster, A. Wallensten, J. Waldenstrom, A.D.M.E. Osterhaus, R.A.M. Fouchier, Science 312, 384–388 (2006)CrossRefPubMedGoogle Scholar
  14. 14.
    A. Fusaro, I. Monne, G. Cattoli, R. De Nardi, A. Salviato, A. Moreno Martin, I. Capua, C. Terregino, Arch. Virol. 155, 77–81 (2010)CrossRefPubMedGoogle Scholar
  15. 15.
    N. Kishida, Y. Sakoda, M. Shiromoto, G.-R. Bai, N. Isoda, A. Takada, G. Laver, H. Kida, Virus Genes 37, 16–21 (2008)CrossRefPubMedGoogle Scholar
  16. 16.
    S. Krauss, C.A. Obert, J. Franks, D. Walker, K. Jones, P. Seiler, L. Niles, S.P. Pryor, J.C. Obenauer, C.W. Naeve, L. Widjaja, R.J. Webby, R.G. Webster, PLoS Pathog. 3, e167 (2007)CrossRefPubMedGoogle Scholar
  17. 17.
    J.-H. Liu, K. Okazaki, G.-R. Bai, W.-M. Shi, A. Mweene, H. Kida, Virus Genes 29, 81–86 (2004)CrossRefPubMedGoogle Scholar
  18. 18.
    A. Wallensten, V.J. Munster, J. Elmberg, A.D.M.E. Osterhaus, R.A.M. Fouchier, B. Olsen, Arch. Virol. 150, 1685–1692 (2005)CrossRefPubMedGoogle Scholar
  19. 19.
    W.B. Becker, J. Hyg. 64, 309–320 (1966)CrossRefGoogle Scholar
  20. 20.
    Y. Kawaoka, T.M. Chambers, W.L. Sladen, R.G. Webster, Virology 163, 247–250 (1988)CrossRefPubMedGoogle Scholar
  21. 21.
    L. Widjaja, S.L. Krauss, R.J. Webby, T. Xie, R.G. Webster, J. Virol. 78, 8771–8779 (2004)CrossRefPubMedGoogle Scholar
  22. 22.
    H. Ip, P. Flint, J.C. Franson, R. Dusek, D. Derksen, R. Gill, C. Ely, J. Pearce, R. Lanctot, S. Matsuoka, D. Irons, J. Fischer, R. Oates, M. Petersen, T. Fondell, D. Rocque, J. Pedersen, T. Rothe, Virol. J. 5, 71 (2008)CrossRefPubMedGoogle Scholar
  23. 23.
    V.J. Munster, C. Baas, P. Lexmond, J. Waldenström, A. Wallensten, T. Fransson, G.F. Rimmelzwaan, W.E.P. Beyer, M. Schutten, B. Olsen, A.D.M.E. Osterhaus, R.A.M. Fouchier, PLoS Pathog. 3, e61 (2007)CrossRefPubMedGoogle Scholar
  24. 24.
    A. Gaston, Seabirds: a natural history (Yale University Press, New Haven, 2004)Google Scholar
  25. 25.
    E. Spackman, D.A. Senne, T.J. Myers, L.L. Bulaga, L.P. Garber, M.L. Perdue, K. Lohman, L.T. Daum, D.L. Suarez, J. Clin. Microbiol. 40, 3256–3260 (2002)CrossRefPubMedGoogle Scholar
  26. 26.
    E. Hoffmann, J. Stech, Y. Guan, R.G. Webster, D.R. Perez, Arch. Virol. 146, 2275–2289 (2001)CrossRefPubMedGoogle Scholar
  27. 27.
    B.-F. Qiu, W.-J. Liu, D.-X. Peng, S.-L. Hu, Y.-H. Tang, X.-F. Liu, J. Virol. Methods 155, 193–198 (2009)CrossRefPubMedGoogle Scholar
  28. 28.
    S.F. Altschul, T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, D.J. Lipman, Nucleic Acids Res. 25, 3389–3402 (1997)CrossRefPubMedGoogle Scholar
  29. 29.
    K. Tamura, J. Dudley, M. Nei, S. Kumar, Mol. Biol. Evol. 24, 1596–1599 (2007)CrossRefPubMedGoogle Scholar
  30. 30.
    L. Tranquilla, A. Hedd, C. Burke, W.A. Montevecchi, P.M. Regular, G.J. Robertson, L.A. Stapleton, S. Wilhelm, D.A. Fifield, A.D. Buren, Estuar. Coast. Shelf Sci. (2010). doi: 10.1016/j.ecss.2010.06.003
  31. 31.
    A.A. Sazonov, D.K. Lvov, R.G. Webster, T.V. Sokolova, N.A. Braude, N.V. Portyanko, Arch. Virol. 53, 1–7 (1977)CrossRefPubMedGoogle Scholar
  32. 32.
    D. Bordage, J.-P.L. Savard, BNA177, in The birds of North America, ed. by A. Poole, F. Gill (The Academy of Natural Sciences, Philadelphia, PA, 1995)Google Scholar
  33. 33.
    A.J. Gaston, J.M. Hipfner, BNA497, in The birds of North America, ed. by A. Poole, F. Gill (The Academy of Natural Sciences, Philadelphia, PA, 2000)Google Scholar
  34. 34.
    G.J. Robertson, J.-P.L. Savard, BNA651, in The birds of North America, ed. by A. Poole, F. Gill (The Academy of Natural Sciences, Philadelphia, PA, 2002)Google Scholar
  35. 35.
    R. Chen, E.C. Holmes, Virology 383, 156–161 (2009)CrossRefPubMedGoogle Scholar
  36. 36.
    V. Bakken, F. Mehlum, Arctic 58, 268–275 (2005)Google Scholar
  37. 37.
    G. Donaldson, A.J. Gaston, K. Kampp, J. Chardine, D.N. Nettleship, R.D. Elliot, Winter distributions of thick-billed murres from the eastern Canadian Arctic and western Greenland in relation to age and time of year, Occasional Paper 96 (Canadian Wildlife Service, Ottawa, 1997)Google Scholar
  38. 38.
    A.J. Gaston, Populations, movements, and wintering areas of Thick-billed Murres (Uria lomvia) in eastern Canada, CWS Progress Notes 110 (Canadian Wildlife Service, Ottawa, 1980)Google Scholar
  39. 39.
    F. Huettmann, A.W. Diamond, Can. J. Zool. 78, 624–647 (2000)CrossRefGoogle Scholar
  40. 40.
    P. Lyngs, Medd Grønl Biosci 38, 1–67 (2003)Google Scholar

Copyright information

© Springer Science+Business Media, LLC 2010

Authors and Affiliations

  • Alissa Granter
    • 1
  • Michelle Wille
    • 1
  • Hugh Whitney
    • 2
  • Gregory J. Robertson
    • 3
  • Davor Ojkic
    • 4
  • Andrew S. Lang
    • 1
  1. 1.Department of BiologyMemorial University of NewfoundlandSt. John’sCanada
  2. 2.Newfoundland and Labrador Department of Natural ResourcesSt. John’sCanada
  3. 3.Wildlife Research DivisionEnvironment CanadaMount PearlCanada
  4. 4.Animal Health LaboratoryUniversity of GuelphGuelphCanada

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