Abstract
In this study, four strains of Japanese Encephalitis Virus (JEV) were isolated from the cerebrospinal fluid of aborted fetuses or stillborn piglets collected randomly from a number of piggeries in central China. The E genes were cloned by RT–PCR and sequenced. Phylogenetic analysis was performed with 48 JEV isolates previously reported in China and other countries, and showed that all four isolates can be classified into the subcluster of genotype III. The results strongly suggest that the genotype III of JEV is the major variant currently circulating in the swinery of central China.

References
D.W. Vaughn, C.H. Hoke Jr., The epidemiology of Japanese encephalitis: prospects for prevention. Epidemiol. Rev. 14, 197–221 (1992)
B.D. Lindenbach, H.J. Theil, C.M. Rice, in Flaviviridae: The Viruses and Their Replication. Fields Virology, 5th edn., ed. by P.M. Howley, D.M. Knipe (Lippincott Williams and Wilkins, New York, 2007), pp. 1101–1252
W.R. Chen, R.B. Tesh, R. Rico-Hesse, Genetic variation of Japanese encephalitis virus in nature. J Gen. Virol. 71, 2915–2922 (1990)
V.T.Q. Huong, D.Q. Ha, V. Deubel, Genetic study of Japanese encephalitis viruses from Vietnam. Am. J. Trop. Med. Hyg. 49, 538–544 (1993)
A. Ali, A. Igarashi, Antigenic and genetic variations among Japanese encephalitis virus strains belonging to genotype 1. Microbiol. Immunol. 41, 241–252 (1997)
E.G. Westaway, J. Blok, Taxonomy and evolutionary relationships of flaviviruses, in Dengue and Dengue Haemorrhagic Fever, ed. by D.J. Gubler, G. Kuno (CAB International, Wallingford, 1997), pp. 147–173
M.N. Mangada, T. Takegami, Molecular characterization of the Japanese encephalitis virus representative immunotype strain JaGAr 01. Virus Res. 59(1), 101–112 (1999)
T. Solomon, N.M. Dung, R. Kneen, M. Gainsborough, D.W. Vaughn, V.T. Khanh, Japanese encephalitis. J. Neurol. Nerosurg. Psychiatry 68, 405–415 (2000)
P.T. Nga, M. Parguet, V.D. Cuong, S.P. Ma, F. Hasebe, S. Inoue, Y. Makino, M. Takagi, V.S. Nam, K. Morita, Shift in Japanese encephalitis virus (JEV) genotype circulating in northern Vietnam: implications for frequent introductions of JEV from southeast Asia to east Asia. J. Gen. Virol. 85, 1625–1631 (2004)
H.Y. Wang, T. Takasaki, S.H. Fu, X.H. Sun, H.L. Zhang, Z.X. Wang, Z.Y. Hao, J.K. Zhang, Q. Tang, A. Kotaki, S. Tajima, X.F. Liang, W.Z. Yang, I. Kurane, G.D. Liang, Molecular epidemiological analysis of Japanese encephalitis virus in China. J. Gen. Virol. 88, 885–894 (2007)
A. Igarashi, P. Chiowanich, P. Leechanachai, J. Supawadee, Virological and epidemiological studies on encephalitis in Chiang Mai Area, Thailand in the year of 1982 III virus isolation from hospitalized patients. Trop. Med. 25, 149–154 (1983)
S. Kumar, K. Tamura, I.B. Jakobsen, M. Nei, MEGA2: Molecular Evolutionary Genetics Analysis Software (Arizona State University, Tempe, 2001)
V.P. Bondre, R.S. Jadi, A.C. Mishra, P. Yergolkar, V.A. Arankalle, West Nile virus isolates from India: evidence for a distinct lineage. J. Gen. Virol. 88, 875–884 (2007)
R.D.M. Page, TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12, 357–358 (1996)
H.Y. Wang, S.H. Fu, X.Y. Li, H. Song, J.G. Min, J. Deng, Y.L. Yang, I. Kurane, G.D. Liang, Isolation and identification of genotype I Japanese encephalitis virus in China. Chin. J. Microbiol. Immunol. 24, 843–849 (2004)
H. Wang, Y. Li, X. Liang, G. Liang, Japanese encephalitis in mainland china. Jpn. J. Infect. Dis. 62, 331–336 (2009)
P.D. Uchil, V. Satchidanandam, Phylogenetic analysis of Japanese encephalitis virus: envelope gene based analysis reveals a fifth genotype, geographic clustering, and multiple introductions of the virus into the Indian subcontinent. Am. J. Trop. Med. Hyg. 65, 242–251 (2001)
Acknowledgments
The authors gratefully acknowledge the critical review by Dr. Norman A. Gregson (UCL, London, UK). This work was supported by the Science and Technology Projects for Public Welfare of the Ministry of Agriculture (200803015) and Public Interest Project of Henan Province (2008-145) and China Postdoctoral Science Foundation (20090450929).
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Jian-Ming Fan and Jun Luo contributed equally to this work.
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Fan, JM., Luo, J., Chen, L. et al. Genetic analysis of strains of Japanese Encephalitis Virus isolated from swine in central China. Virus Genes 40, 357–361 (2010). https://doi.org/10.1007/s11262-010-0464-9
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DOI: https://doi.org/10.1007/s11262-010-0464-9