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Full-length genome sequence of avian paramyxovirus type 4 isolated from a mallard duck

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Abstract

Avian paramyxovirus (APMV) consists of nine serotypes, APMV-1 through -9, of which only APMV-1 and APMV-6 have been fully sequenced. Here, we present the complete 15,054 nt RNA genome of APMV-4 isolated from a mallard duck, which conformed to the “rule of six.” The APMV-4 genome had six transcriptional units in the order 3′-NP-P/V-M-F-HN-L-5′, which coded for the nucleocapsid (N), phospho- (P), matrix (M), fusion (F), hemagglutinin-neuraminidase (HN), and large (L) proteins. Similar to APMV-1 but unlike APMV-6, APMV-4 lacked a small hydrophobic protein. The leader and trailer sequences were 55 and 17 nt in length, respectively, and the 12 nt-terminal regions of both ends of the APMV-4 genome were complementary. Using phylogenetic analysis, APMV-4 was classified as a member of the genus Avulavirus, and was more closely related to APMV-1 than to APMV-2 or APMV-6. These results may help establish the taxonomic position of Paramyxoviridae, Avulavirus members.

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References

  1. D.J. Alexander, in Acute Virus Infections of Poultry, ed. by J.B. McFerran, M.S. McNulty (Martinus Nijhoff Publishers, The Netherlands, 1986), pp. 52–66

  2. D.J. Alexander, in Diseases of Poultry, ed. by B.W. Calnek, (Iowa State University Press, Ames, 1997), pp. 541–569

  3. D.J. Alexander, M. Pattisson, I. Macpherson, Avian Pathol. 12, 469–482 (1983). doi:10.1080/03079458308436192

    Google Scholar 

  4. S. Bagai, R.A. Lamb, Virology 238, 283–290 (1997). doi:10.1006/viro.1997.8858

    Article  PubMed  CAS  Google Scholar 

  5. R.A. Bankowski, R.E. Corstvet, G.T. Clark, Science 132, 292–293 (1960). doi:10.1126/science.132.3422.292

    Article  PubMed  CAS  Google Scholar 

  6. R.A. Bankowski, J. Almquist, J. Dombruski, Avian Dis. 25, 517–520 (1995). doi:10.2307/1589944

    Article  Google Scholar 

  7. R. Buckland, F. Wild, Nature 338, 547 (1989). doi:10.1038/338547a0

    Article  PubMed  CAS  Google Scholar 

  8. P.C. Chang, M.L. Hsieh, J.H. Shien, D.A. Graham, M.S. Lee, H.K. Shieh, J. Gen. Virol. 82, 2157–2168 (2001)

    Article  PubMed  CAS  Google Scholar 

  9. N.A. Coleman, M.E. Peeples, Virology 195, 596–607 (1993). doi:10.1006/viro.1993.1411

    Article  PubMed  CAS  Google Scholar 

  10. M.S. Collins, J.B. Bashiruddin, D.J. Alexander, Arch. Virol. 128, 363–370 (1993). doi:10.1007/BF01309446

    Article  PubMed  CAS  Google Scholar 

  11. H. Connaris, T. Takimoto, R. Russell, S. Crennell, I. Moustafa, A. Portner et al., J. Virol. 76, 1816–1824 (2002). doi:10.1128/JVI.76.4.1816-1824.2002

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  12. S. Crennell, T. Takimoto, A. Portner, G. Taylor, Nat. Struct. Biol. 7, 1068–1074 (2000). doi:10.1038/81002

    Article  PubMed  CAS  Google Scholar 

  13. J. Curran, D. Kolakofsky, Adv. Virus. Res. 54, 403–422 (1999). doi:10.1016/S0065-3527(08)60373-5

    Article  PubMed  CAS  Google Scholar 

  14. O. de Leeuw, B.J. Peeters, J. Gen. Virol. 80, 131–136 (1999)

    Article  PubMed  Google Scholar 

  15. B.H. Harcourt, A. Tamin, K. Halpin, T.G. Ksiazek, P.E. Rollin, W.J. Bellini et al., Virology 287, 192–201 (2001). doi:10.1006/viro.2001.1026

    Article  PubMed  CAS  Google Scholar 

  16. C.M. Horvath, R.A. Lamb, J. Virol. 66, 2443–2455 (1992)

    PubMed  CAS  PubMed Central  Google Scholar 

  17. Y. Huang, H.Q. Wan, H.Q. Liu, Y.T. Wu, X.F. Liu, Arch. Virol. 149, 1445–1457 (2004). doi:10.1007/s00705-004-0297-8

    Article  PubMed  CAS  Google Scholar 

  18. R.M. Iorio, G.M. Field, J.M. Sauvron, A.M. Mirza, R. Deng, P.J. Mahon et al., J. Virol. 75, 1918–1927 (2001). doi:10.1128/JVI.75.4.1918-1927.2001

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  19. E.D. Jorgensen, P.L. Collins, P.T. Lomedico, Virology 156, 12–24 (1987). doi:10.1016/0042-6822(87)90431-4

    Article  PubMed  CAS  Google Scholar 

  20. D. Kolakofsky, T. Pelet, D. Garcin, S. Hausmann, J. Curran, L. Roux, J. Virol. 72, 891–899 (1998)

    PubMed  CAS  PubMed Central  Google Scholar 

  21. S. Krishnamurthy, S.K. Samal, J. Gen. Virol. 79, 2419–2424 (1998)

    Article  PubMed  CAS  Google Scholar 

  22. R.A. Lamb, P.L. Collins, D. Kolakofsky, J.A. Melero, Y. Nagai, M.B.A. Oldstone et al (eds.), Virus Taxonomy: Classification and Nomenclature of Viruses. Seventh Report of the International Committee for Taxonomy of Viruses (Academic Press, CA, 2000), pp. 549–561

  23. R.A. Lamb, D. Kolakofsky, Fields Virology, 4th edn, vol. 1, ed. by D.M. Knipe, P.M. Howley, D.E. Griffin, R.A. Lamb, M.A. Martin, E. Roizman, S.E. Straus (Lippincott Williams & Wilkins, Philadelphia, 2001), pp. 1305–1340

  24. M. Lipkind, D. Alexander, E. Shihmanter, Y. Weisman, M. Collins, Comp. Immunol. Microbiol. Infect. Dis. 18, 189–207 (1995). doi:10.1016/0147-9571(95)00003-Q

    Article  PubMed  CAS  Google Scholar 

  25. M.A. Mayo, C.R. Pringle, J. Gen. Virol. 79, 649–657 (1998)

    Google Scholar 

  26. P.J. Miller, D.B. Boyle, B.T. Eaton, L.F. Wang, Virology 317, 330–344 (2003). doi:10.1016/j.virol.2003.08.013

    Article  PubMed  CAS  Google Scholar 

  27. A.M. Mirza, R. Deng, R.M. Iorio, J. Virol. 68, 5093–5099 (1994)

    PubMed  CAS  PubMed Central  Google Scholar 

  28. T.G. Morrison, Biochim. Biophys. Acta 1614, 73–84 (2003). doi:10.1016/S0005-2736(03)00164-0

    Article  PubMed  CAS  Google Scholar 

  29. M.E. Peeples, C. Wang, K.C. Gupta, N. Coleman, J. Virol. 66, 3263–3269 (1992)

    PubMed  CAS  PubMed Central  Google Scholar 

  30. O. Poch, B.M. Blumberg, L. Bougueleret, N. Tordo, J. Gen. Virol. 71, 1153–1162 (1990). doi:10.1099/0022-1317-71-5-1153

    Article  PubMed  CAS  Google Scholar 

  31. J.N. Reitter, T. Sergel, T.G. Morrison, J. Virol. 69, 5995–6004 (1995)

    PubMed  CAS  PubMed Central  Google Scholar 

  32. C.J. Russell, T.S. Jardetzky, R.A. Lamb, J. Virol. 78, 13727–13742 (2004). doi:10.1128/JVI.78.24.13727-13742.2004

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  33. M.J. Schnell, K.K. Conzelmann, Virology 214, 522–530 (1995). doi:10.1006/viro.1995.0063

    Article  PubMed  CAS  Google Scholar 

  34. E. Shihmanter, A. Panshin, M. Lipkind, Comp. Immunol. Microbiol. Infect. Dis. 28, 37–51 (2005). doi:10.1016/j.cimid.2004.03.010

    Article  PubMed  Google Scholar 

  35. K.F. Shortridge, D.J. Alexander, Res. Vet. Sci. 25, 128–130 (1978)

    PubMed  CAS  Google Scholar 

  36. D.E. Sleat, A.K. Banerjee, J. Virol. 67, 1334–1339 (1993)

    PubMed  CAS  PubMed Central  Google Scholar 

  37. W.L. Stanislawek, C.R. Wilks, J. Meers, G.W. Horner, D.J. Alexander, R.J. Manvell et al., Arch. Virol. 147, 1287–1302 (2002). doi:10.1007/s00705-002-0818-2

    Article  PubMed  CAS  Google Scholar 

  38. M. Steward, I.B. Vipond, N.S. Millar, P.T. Emmerson, J. Gen. Virol. 74, 2539–2547 (1993). doi:10.1099/0022-1317-74-12-2539

    Article  PubMed  CAS  Google Scholar 

  39. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, D.G. Higgins, Nucleic Acids Res. 25, 4876–4882 (1997). doi:10.1093/nar/25.24.4876

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  40. R. Turek, M. Gresikova, B. Tumova, Acta Virol. 28, 156–158 (1984)

    PubMed  CAS  Google Scholar 

  41. J.K. Young, R.P. Hicks, G.E. Wright, T.G. Morrison, Virology 243, 21–31 (1998). doi:10.1006/viro.1998.9044

    Article  PubMed  CAS  Google Scholar 

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Acknowledgment

This study was fully supported by a grant from the National Veterinary Research and Quarantine Service.

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Authors and Affiliations

  1. Avian Diseases Division, Veterinary Research Institute, National Veterinary Research and Quarantine Service, 480 Anyang-6, Anyang, Gyeonggi, 430-824, South Korea

    Woo-Jin Jeon, Eun-Kyoung Lee, Jun-Hun Kwon & Kang-Seuk Choi

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  1. Woo-Jin Jeon
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  2. Eun-Kyoung Lee
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Correspondence to Kang-Seuk Choi.

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Jeon, WJ., Lee, EK., Kwon, JH. et al. Full-length genome sequence of avian paramyxovirus type 4 isolated from a mallard duck. Virus Genes 37, 342–350 (2008). https://doi.org/10.1007/s11262-008-0267-4

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