2D PLS QSPR models for analyzing substance permeability across the blood-brain barrier (BBB) using PAMPA (artificial membrane permeability assay) are developed. Physico-chemical and structural interpretation of the constructed models is performed. It is shown that nitrogen-containing fragments and a significant part of oxygen-containing functional groups negatively affect the permeability of compounds across BBB. At the same time, aromatic fragments and halogens positively affect permeability. It is found that electrostatic factors have the highest effect on BBB permeability.
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References
D. J. Begley, M. W. Bradbury, and J. Kreuter (eds.), The Blood-Brain Barrier and Drug Delivery to the CNS, New York, Basel, Marcel Dekker, Inc., (2000), p. 247.
M. Adenot and R. J. Lahana, J. Chem. Inf. Comput. Sci., 44, No. 1, 239-248 (2004).
J. Mensch, J. Oyarzabal, C. Mackie, and P. Augustijns, J. Pharm. Sci., 98, No. 12, 4449-4466 (2009).
H. Sun, K. Nguyen, E. Kerns, et al., Bioorg. Med. Chem., 25, 1266-1276 (2017).
B. T. Hawkins and T. P. Davis, Pharmacol. Rev., 57, No. 2, 173-185 (2005).
J. Bicker, G. Alves, A. Fortuna, et al., Int. J. Pharm., 102-111 (2016).
A. Avdeef, Absorption and Drug Development: Solubility, Permeability, and Charge State, John Wiley & Sons, Inc., 308 (2012), DOI: https://doi.org/10.1002/9781118286067.
L. Di, E. H. Kerns, K. Fan, et al., Eur. J. Med. Chem., 38, 223-232 (2003), DOI: https://doi.org/10.1016/s0223-5234(03)00012-6.
A. Avdeef, S. Bendels, L. Di, et al., J. Pharm. Sci., 96, No. 11, 2893-2909 (2007).
J. Mensch, A. Melis, C. Mackie, et al., Eur. J. Pharm. Biopharm., 74, 495-502 (2010), DOI: https://doi.org/10.1016/j.ejpb.2010.01.003.
L. Grumetto, G. Russo, and F. Barbato, Eur. J. Pharm. Sci., 65, 139-146 (2014), DOI: https://doi.org/10.1016/j.ejps.2014.09.015.
P.-A. Billat, E. Roger, S. Faure, and F. Lagarce, Drug Discov. Today, 22, 761-775 (2017).
O. Tsinman, K. Tsinman, N. Sun, and A. Avdeef, Pharm.Res., 28, No. 2, 337-363 (2011), DOI: https://doi.org/10.1007/s11095-010-0280-x.
K.-F. Liew, N. A. Hanapi, K.-L. Chan, et al., J. Pharm. Sci., 1-9 (2016), DOI: https://doi.org/10.1016/j.xphs.2016.10.006.
C.-T. Chi, M.-H. Lee, C.-F. Weng, and M. K. Leong, Int. J. Mol. Sci., 20, 3170 (2019), DOI: https://doi.org/10.3390/ijms20133170.
V. Kuz’min, A. Artemenko, L. Ognichenko, et al., Struct. Chem., 1365-1392 (2021).
V. E. Kuz’min, A. G. Artemenko, E. N. Muratov, et al., Recent Advances in QSAR Studies,. T. Puzyn, J. Leszczynski, and M. T. D. Cronin (eds.), London, Springer, 127-176 (2010).
A. Avdeef, ADMET & DMPK, 8, 29-77 (2020).
S. Rannar, F. Lindgren, P. Geladi, and S. Wold, J. Chemometrics, 8, 111-125 (1994).
R. E. Carhart, D. H. Smith, and R. Venkataraghavan, J. Chem. Inf. Comput. Sci., 25, 64-73 (1985), DOI: https://doi.org/10.1021/ci00046a002.
K. Hasegawa, Y. Miyashita, and K. Funatsu, J. Chem. Inf. Comput. Sci., 37, 306-310 (1997), https://doi.org/https://doi.org/10.1021/ci960047x.
P. Gramatica, QSAR & Comb. Sci., 26, 694-701 (2007), https://doi.org/https://doi.org/10.1002/qsar.200610151.
M. Meloun, J. Militku, and M. Hill, Analyst, 127, 433-450 (2002).
E. V. Radchenko, A. S. Dyabina, and V. A. Palyulin, Molecules, (2020), DOI: https://doi.org/10.3390/molecules25245901.
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The authors are grateful to the Academician of the National Academy of Medical Sciences of Ukraine M. Ya. Golovenko and Dr. Sci. Biol. V. B. Larionov for useful consultations during the discussion of the results of this work.
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Translated from Teoretychna ta Eksperymentalna Khimiya, Vol. 58, No. 1, pp. 25-29, January-February, 2022.
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Kosinska, G.P., Ognichenko, L.M., Shyrykalova, A.O. et al. Influence of Chemical Structure of Molecules on Blood–Brain Barrier Permeability on the Pampa Model. Theor Exp Chem 58, 29–33 (2022). https://doi.org/10.1007/s11237-022-09718-5
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DOI: https://doi.org/10.1007/s11237-022-09718-5