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Asymmetric triiodide-diiodine interactions in the crystal of (Z)-4-chloro-5-((2-((4-chloro-5H-1,2,3-dithiazol-5-ylidene)amino)phenyl)amino)-1,2,3-dithiazol-1-ium oligoiodide

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Abstract

The crystal structure and properties of (Z)-4-chloro-5-((2-((4-chloro-5H-1,2,3-dithiazol-5-ylidene)amino)phenyl)amino)-1,2,3-dithiazol-1-ium oligoiodide (C2/c) synthesized from the initial bis(4-сhloro-5H-1,2,3-dithiazolo-5-ylidene)benzene-1,2-diamine (P21/c) have been characterized by various experimental and theoretic methods. The superposition of atomic basin boundaries in the electron density and in the electrostatic potential does not confirm the halogen bonding between the triiodide anion and sulfur atoms in cation. On the other hand, in the studied oligoiodide, the charge-assisted iodine–iodine halogen bonds are observed between the strongly asymmetric triiodide and diiodine units; thus, the oligoiodide anion includes at least two diiodine fragments with bond lengths 2.7334(4) and 2.7786(5) Å bound. This key trait has resulted in characteristic spectral and thermal features. Raman spectra do not contain typical triiodide bands but only those that are expectable for bound diiodine at 157 and 179 cm−1. Thermal decomposition has demonstrated release of both diiodine molecules within one decomposition stage without melting.

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References

  1. Yu H, Yan L, He Y, Meng H, Huang W (2017) Chem Commun 53:432–435

    Article  CAS  Google Scholar 

  2. Yin Z, Wang Q-X, Zeng M-H (2012) J Am Chem Soc 134:4857–4863

    Article  CAS  Google Scholar 

  3. Svensson PH, Kloo L (2003) Chem Reviews 103(5):1649–1684

    Article  CAS  Google Scholar 

  4. Desiraju GR, Ho PS, Kloo L (2013) Pure Appl Chem 85(8):1711–1713

    Article  CAS  Google Scholar 

  5. Blake AJ, Devillanova FA, Gould RO, Li W-S, Lippolis V, Parsons S, Radek C, Schroder M (1998) Chem Soc Rev 27:195–205

    Article  CAS  Google Scholar 

  6. Beno BR, Yeung K-S, Bartberger MD, Pennington LD, Meanwell NA (2015) J Med Chem 58(11):4383–4438

    Article  CAS  Google Scholar 

  7. Shibaeva RP, Yagubskii EB (2004) Chem Rev 104:5347–5378

    Article  CAS  Google Scholar 

  8. Rakitin OA (2011) Russ Chem Rev 80:647–659

    Article  CAS  Google Scholar 

  9. Konstantinova LS, Rakitin OA (2008) Russ Chem Rev 77:521–546

    Article  CAS  Google Scholar 

  10. Rawson JM, Alberola A, Whalley A (2006) J Mater Chem 16:2560–2575

    Article  CAS  Google Scholar 

  11. Barclay TM, Cordes AW, Goddard JD, Mawhinney RC, Oakley RT, Preuss KE, Reed RW (1997) J Am Chem Soc 119:12136–12141

    Article  CAS  Google Scholar 

  12. Barclay TM, Cordes AW, Oakley RT, Preuss KE, Reed RW (1998) Chem Commun:1039–1040

  13. Barclay TM, Beer L, Cordes AW, Oakley RT, Preuss KE, Reed RW, Taylor NJ (2001) Inorg Chem 40:2709–2714

    Article  CAS  Google Scholar 

  14. Wang Y-H, Lu Y-X, Zou J-W, Yu Q-S (2008) Int J Quantum Chem 108:90–99

    Article  CAS  Google Scholar 

  15. Shi Q-C, Lu Y-X, Fan J-C, Zou J-W, Wang Y-H (2008) J Mol Struct 853:39–44

    Article  CAS  Google Scholar 

  16. Clark T, Hennemann M, Murray JS, Politzer P (2007) J Mol Model 13:291–296

    Article  CAS  Google Scholar 

  17. Politzer P, Riley KE, Bulat FA, Murray JS (2012) Comput Theor Chem 998:2–8

    Article  CAS  Google Scholar 

  18. Groenewald F, Esterhuysen C, Dillen J (2012) Theor Chem Accounts 131:1–12

    Article  CAS  Google Scholar 

  19. Bartashevich EV, Matveychuk YV, Troitskaya EA, Tsirelson VG (2014) Computational and Theoretical Chemistry 1037:53–62

    Article  CAS  Google Scholar 

  20. Desiraju GR, Parthasarathy R (1989) J Am Chem Soc 111:8725–8726

    Article  CAS  Google Scholar 

  21. Bartashevich EV, Shmanina EA, Yushina ID, Tsirelson VG, Kim DG (2014) J Struct Chem 55:154–160

    Article  CAS  Google Scholar 

  22. Bartashevich EV, Batalov VI, Yushina ID, Stash AI, Chen YS (2016) Acta Crystallographica Section C 72:341–345

    CAS  Google Scholar 

  23. Konstantinova LS, Rakitin OA, Rees CW, Sivadasan S, Torroba T (1998) Tetrahedron 54:9639–9650

    Article  CAS  Google Scholar 

  24. Sheldrick GM (2008) Acta Cryst A 64:112–122

    Article  CAS  Google Scholar 

  25. The Cambridge Crystallographic Data Centre via www.ccdc.cam.ac.uk/data_request/cif

  26. Dovesi R, Orlando R, Erba A, Zicovich-Wilson CM, Civalleri B, Casassa S, Maschio L, Ferrabone M, De La Pierre M, D’Arco P, Noel Y, Causa M, Rerat M, Kirtman B (2014) Int J Quantum Chem 114:1287–1317

    Article  CAS  Google Scholar 

  27. Lee C, Yang W, Parr RG (1988) Phys Rev B37:785–789

    Article  Google Scholar 

  28. Becke AD (1988) Phys Rev 38:3098–3100

    Article  CAS  Google Scholar 

  29. Iodine Basis set. URL: http://www.tcm.phy.cam.ac.uk/~mdt26/basis_sets/I_basis.txt

  30. Gatti C, Saunders VR, Roetti CJ (1994) J Chem Phys 101:10686–10696

    Article  CAS  Google Scholar 

  31. Maschio L, Kirtman B, Rerat M, Orlando R, Dovesi R (2013) J Chem Phys 139:164101

    Article  Google Scholar 

  32. Silvi B, Savin A (1994) Nature 371:683–686

    Article  CAS  Google Scholar 

  33. Gatti C, Casassa S (2016) Topond14. User’s Manual. http://www.istm.cnr.it/csrsrc/sw_topond.html

    Google Scholar 

  34. I. Yusina – S. Casassa personal communication, 2017.

  35. Granovsky AA Firefly version 8. http://classic.chem.msu.su/gran/firefly/index.html

  36. Lu T, Chen F (2012) J Comput Chem 33:580–592

    Article  Google Scholar 

  37. Hübschle CB, Dittrich B (2011) J Appl Crystallogr 44:238–257

    Article  Google Scholar 

  38. Hübschle CB, Luger P (2006) J Appl Crystallogr 39:901–904

    Article  Google Scholar 

  39. Bartashevich EV, Stash AI, Batalov VI, Yushina ID, Drebushchak TN, Boldyreva EV, Tsirelson VG (2016) Struct Chem 27:1553–1560

    Article  CAS  Google Scholar 

  40. Aragoni MC, Arca M, Caltagirone C, Castellano C, Demartin F, Garau A, Isaia F, Lippolis V, Montisc R, Pintus A (2012) Cryst Eng Comm 14:5809–5823

    Article  CAS  Google Scholar 

  41. Groom CR, Bruno IJ, Lightfoot MP, Ward SC (2016) Acta Cryst B72:171–179

    Google Scholar 

  42. Cameron TS, Decken A, Fang M, Parsons S, Passmore J, Wood DJ (1999) Chem Commun:1801–1802

  43. Beer L, Cordes AW, Haddon RC, Itkis ME, Oakley RT, Reed RW, Robertson CM (2002) Chem Commun:1872–1873

  44. Barclay TM, Beer L, Cordes AW, Oakley RT, Preuss KE, Taylor NJ, Reed RW (1999) Chem Commun:531–532

  45. Bader RFW (1990) Atoms in molecules. A quantum theory. Oxford University Press, New York,

    Google Scholar 

  46. Abate A, Brischetto M, Cavallo G (2010) Chem Commun 46:2724

    Article  CAS  Google Scholar 

  47. Nelyubina YV, Antipin MY, Dunin DS (2010) Chem Commun 46:5325–5327

    Article  CAS  Google Scholar 

  48. Megen M, Reiss GJ (2013) Inorganics 1:3–13

    Article  Google Scholar 

  49. Tebbe K-F, Loukili RZ (1998) Anorg Allg Chem 624:1175

    Article  CAS  Google Scholar 

  50. Gaballa AS, Teleb SM, Rusanov E, Steinborn D (2004) Inorg Chim Acta 357:4144

    Article  CAS  Google Scholar 

  51. Giese M, Albrecht M, Bohnen C, Repenko T, Valkonen A, Rissanen K (2014) Dalton Trans 43:1873

    Article  CAS  Google Scholar 

  52. Batalov VI, Kim DG, Dikhtiarenko A, Amghouz Z, Bartashevich EV, Garcia-Granda S (2014) Z Kristallogr New Cryst Struct 229:211–212

    CAS  Google Scholar 

  53. Bartashevich EV, Yushina ID, Vershinina EA, Slepukhin PA, Kim DG (2014) J Struct Chem 55:112–119

    Article  CAS  Google Scholar 

  54. Batsanov AS, Bryce MR, Chesney A, Howard JAK, John DE, Moore AJ, Wood CL, Gershtenman H, Becker JY, Khodorkovsky VY, Ellern A, Bernstein J, Perepichka IF, Rotello V, Gray M, Cuello AO (2001) J Mater Chem 11:2181

    Article  CAS  Google Scholar 

  55. Murata T, Morita Y, Yakiyama Y, Fukui K, Yamochi H, Saito G, Nakasuji K (2007) J Am Chem Soc 129:10837

    Article  CAS  Google Scholar 

  56. Warden AC, Warren M, Hearn MTW, Spiccia L (2004) New J Chem 28:1160

    Article  CAS  Google Scholar 

  57. Bartashevich EV, Yushina ID, Stash AI, Tsirelson VG (2014) Cryst Growth Des 14:5674–5684

    Article  CAS  Google Scholar 

  58. Mata I, Molins E, Alkorta I, Espinosa E (2007) J Phys Chem A 111:6425–6433

    Article  CAS  Google Scholar 

  59. Shishkina AV, Stash AI, Civalleri B, Ellern A, Tsirelson VG (2010) Mendeleev Commun 20:161–164

    Article  CAS  Google Scholar 

  60. Mata I, Alkorta I, Molins E, Espinosa E (2013) Chem Phys Lett 555:106–109

    Article  CAS  Google Scholar 

  61. Bader RFW, Beddall P (1972) J Chem Phys 56:3320–3329

    Article  CAS  Google Scholar 

  62. Tsirelson VG, Shishkina AV, Stash AI, Parsons S (2009) Acta Crystallogr B65:647–658

    Article  Google Scholar 

  63. Deplano P, Ferraro JR, Mercuri ML, Trogu EF (1999) Coord Chem Rev 188:71–95

    Article  CAS  Google Scholar 

  64. Arca M, Aragoni MC, Devillanova FA, Garau A, Isaia F, Lippolis V, Mancini A, Verani G (2006) Bioinorganic Chemistry and Applications Article ID 58937:1–12

    Google Scholar 

  65. Yushina I, Rudakov B, Krivtsov I, Bartashevich E (2014) J Therm Anal Calorim 118:425–429

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This work was supported by the Ministry of Education and Science of the Russian Federation, grant 4.1157.2017/PP and the Russian Foundation for Basic Research, grant No. 17-03-00406. O.I.B. and O.A.R. are grateful for the financial support from the Russian Science Foundation, grant No. 15-13-10022. The authors express their gratitude to Sylvia Casassa for the assistance in specifying computations with the use of TOPOND14.

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Bol’shakov, O., Yushina, I., Bartashevich, E. et al. Asymmetric triiodide-diiodine interactions in the crystal of (Z)-4-chloro-5-((2-((4-chloro-5H-1,2,3-dithiazol-5-ylidene)amino)phenyl)amino)-1,2,3-dithiazol-1-ium oligoiodide. Struct Chem 28, 1927–1934 (2017). https://doi.org/10.1007/s11224-017-0987-y

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