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Annotation of scientific uncertainty using linguistic patterns

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Abstract

Scientific uncertainty is an integral part of the research process and inherent to the construction of new knowledge. In this paper, we investigate the ways in which uncertainty is expressed in articles and propose a new interdisciplinary annotation framework to categorize sentences containing uncertainty expressions along five dimensions. We propose a method for the automatic annotation of sentences based on linguistic patterns for identifying the expressions of scientific uncertainty that have been derived from a corpus study. We processed a corpus of 5956 articles from 22 journals in three different discipline groups, which were annotated using our automatic annotation method. We evaluate our annotation method and study the distribution of uncertainty expressions across the different journals and categories. The results show a predominant concentration of the distribution of the scientific uncertainty expressions in the Results and Discussion section (71.4%), followed by 12.5% of expressions in the Background section, and the largest proportion of uncertainty expressions, approximately 70.3%, are formed as author(s) statements. Our research contributes methodological advances and insights into the diverse manifestations of scientific uncertainty across disciplinary domains and provides a basis for ongoing exploration and refinement of the understanding of scientific uncertainty communication.

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Data availability

The data supporting the paper is publicly accessible on the Zenodo platform at https://doi.org/https://doi.org/10.5281/zenodo.8024787. Furthermore, the system used for automatic annotation in this study can be accessed for demonstration at https://bit.ly/unscientify-demo.

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Acknowledgements

The authors gratefully acknowledge the French ANR for funding this research under the ANR InSciM Project. Special thanks to the CRIT Laboratory at the Université de Franche-Comté for their support and the provision of conducive working facilities. Additionally, this paper represents a substantially extended version (at least 25% new material) of the ISSI2023 conference paper, and the authors appreciate the insights gained from the conference that contributed to the refinement of the research. The original conference paper entitled “Scientific Uncertainty: an Annotation Framework and Corpus Study in Different Disciplines” is accessible at: https://www.conftool.pro/issi2023/index.php?page=browseSessions&form_session=41.

Funding

This work is supported by the ANR InSciM Project (2021–2025), funded by French ANR, Grant Number ANR-21-CE38-0003-01.

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Both authors contributed equally to the conception, design, and execution of this research project. Panggih Kusuma Ningrum and Iana Atanassova collaborated seamlessly in collecting and analyzing data, developing methodologies, and interpreting results. Their shared intellectual input significantly contributed to the creation of the manuscript, encompassing drafting, revising, and finalizing the content. The authors jointly participated in critical discussions, ensuring the scientific rigor and validity of the study. The allocation of responsibilities and tasks was mutual, and both authors actively engaged in the synthesis of ideas, forming the cohesive narrative present in this manuscript. Consequently, Panggih Kusuma Ningrum and Iana Atanassova share equal credit for the intellectual content and the final version of this research work.

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Correspondence to Panggih Kusuma Ningrum.

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The authors affirm that there are no conflicts of interest or competing interests associated with the completion of this research work and the development of the manuscript. They declare that no financial, personal, or professional circumstances exist that could be perceived as having influenced the conduct or reporting of the research. The authors are committed to upholding the highest standards of integrity and transparency in the communication of their findings. This statement serves as an unequivocal declaration that, to the best of their knowledge, there are no affiliations, financial involvements, or other relationships that could be perceived as constituting a conflict of interest or influencing the impartiality of the research presented in this manuscript.

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Ningrum, P.K., Atanassova, I. Annotation of scientific uncertainty using linguistic patterns. Scientometrics (2024). https://doi.org/10.1007/s11192-024-05009-z

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