Abstract
Chlorobaculum tepidum is a representative of green sulfur bacteria, a group of anoxygenic photoautotrophs that employ chlorosomes as the main light-harvesting structures. Chlorosomes are coupled to a ferredoxin-reducing reaction center by means of the Fenna–Matthews–Olson (FMO) protein. While the biochemical properties and physical functioning of all the individual components of this photosynthetic machinery are quite well understood, the native architecture of the photosynthetic supercomplexes is not. Here we report observations of membrane-bound FMO and the analysis of the respective FMO-reaction center complex. We propose the existence of a supercomplex formed by two reaction centers and four FMO trimers based on the single-particle analysis of the complexes attached to native membrane. Moreover, the structure of the photosynthetic unit comprising the chlorosome with the associated pool of RC-FMO supercomplexes is proposed.
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Abbreviations
- BChl:
-
Bacteriochlorophyll
- C.:
-
Chlorobaculum
- Cfx.:
-
Chloroflexus
- CSM:
-
Chlorosome
- FMO:
-
Fenna–Matthews–Olson protein
- GSB:
-
Green sulfur bacteria
- gRC:
-
Reaction center of green sulfur bacteria
- PSI RC:
-
Reaction center of photosystem 1 of oxygenic photosynthesis
- RC:
-
Reaction center
- TEM:
-
Transmission electron microscopy
References
Bina D, Blankenship RE (2013) Chemical oxidation of the FMO antenna protein from Chlorobaculum tepidum. Photosynth Res 116:11–19
Bina D, Gardian Z, Litvin R, Vacha F (2014) Supramolecular organization of photosynthetic membrane proteins in the chlorosome-containing bacterium Chloroflexus aurantiacus. Photosynth Res 122:13–21
Blankenship RE (2014) Molecular mechanisms of photosynthesis, 2nd edn. Wiley-Blackwell, Oxford, pp 79–82
Blankenship RE, Feick R, Bruce BD, Kirmaier C, Holten D, Fuller RC (1983) Primary photochemistry in the facultative green photosynthetic bacterium Chloroflexus aurantiacus. J Cell Biochem 22:1097–4644
Bryant DA, Costas AMG, Maresca JA, Chew AGM, Klatt CG, Bateson MM, Tallon LJ, Hostetler J, Nelson WC, Heidelberg JF, Ward DM (2007) Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic acidobacterium. Science 317:523–526
Cartron ML, Olsen JD, Sener M, Jackson PJ, Brindley AA, Qian P, Dickman MJ, Leggett GJ, Schulten K, Hunter CN (2014) Integration of energy and electron transfer processes in the photosynthetic membrane of Rhodobacter sphaeroides. Biochim Biophys Acta 1837:1769–1780
Dauter Z, Wilson KS, Sieker LC, Meyer J, Moulis JM (1997) Atomic resolution (0.94 Å) structure of Clostridium acidurici ferredoxin. Detailed geometry of [4fe-4 s] clusters in a protein. Biochemistry 36:16065–16073
Dostal J, Vacha F, Psencik J, Zigmantas D (2014) 2D electronic spectroscopy reveals excitonic structure in the baseplate of a chlorosome. J Phys Chem Lett 5:1743–1747
Fenna RE, Matthews BW (1975) Chlorophyll arrangement in a bacteriochlorophyll protein from Chlorobium limicola. Nature 258:573–577
Fotiadis D, Qian P, Philippsen A, Bullough PA, Engel A, Hunter CN (2004) Structural analysis of the reaction center light-harvesting complex I photosynthetic core complex of Rhodospirillum rubrum using atomic force microscopy. J Biol Chem 279:2063–2068
Frank J, Radermacher M, Penczek P, Zhu J, Li YH, Ladjadj M, Leith A (1996) SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. J Struct Biol 116:190–199
Frigaard N-U, Bryant DA (2006) Chlorosomes: antenna organelles in green photosynthetic bacteria. In: Shively JM (ed) Microbiology monographs, vol 2., Complex intracellular structures in prokaryotes. Springer, Berlin, pp 79–114
Frigaard N-U, Chew AGM, Li H, Maresca JA, Bryant DA (2003) Chlorobium tepidum: insights into the structure, physiology, and metabolism of a green sulfur bacterium derived from the complete genome sequence. Photosynth Res 78:93–117
Golecki JR, Oelze J (1987) Quantitative relationship between bacteriochlorophyll content, cytoplasmic membrane structure and chlorosome size in Chloroflexus aurantiacus. Arch Microbiol 148:236–241
Griesbeck C, Hager-Braun C, Rogl H, Hauska G (1998) Quantitation of P840 reaction center preparations from Chlorobium tepidum: chlorophylls and FMO-protein. Biochim Biophys Acta 1365:285–293
Harauz G, Boekema EJ, van Heel M (1988) Statistical image analysis of electron micrographs of ribosomal subunits. Methods Enzymol 164:35–49
Hauska G, Schoedl T, Remigy H, Tsiotis G (2001) The reaction center of green sulfur bacteria. Biochim Biophys Acta 1507:260–277
He G, Zhang H, King JD, Blankenship RE (2014) Structural analysis of the homodimeric reaction center complex from the photosynthetic green sulfur bacterium Chlorobaculum tepidum. Biochemistry 53:4924–4930
Hohmann-Marriott MF, Blankenship RE (2007a) Variable fluorescence in green sulfur bacteria. Biochim Biophys Acta 1767:106–113
Hohmann-Marriott MF, Blankenship RE (2007b) Hypothesis on chlorosome biogenesis in green photosynthetic bacteria. FEBS Lett 581:800–803
Hohmann-Marriott MF, Blankenship RE, Roberson RW (2005) The ultrastructure of Chlorobium tepidum chlorosomes revealed by electron microscopy. Photosynth Res 86:145–154
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N (2001) Three-dimensional structure of cyanobacterial photosystem I at 2.5 Å resolution. Nature 411:909–917
Kudryashev M, Aktoudianaki A, Dedoglou D, Stahlberg H, Tsiotis G (2014) The ultrastructure of Chlorobaculum tepidum revealed by cryo-electron tomography. Biochim Biophys Acta 1837:1635–1642
Ludtke SJ, Baldwin PR, Chiu W (1999) EMAN: semiautomated software for high-resolution single-particle reconstructions. J Struct Biol 128:82–97
Majumder ELW, Olsen JD, Qian P, Collins AM, Hunter CN, Blankenship RE (2015) Supramolecular organization of photosynthetic complexes in membranes of Roseiflexus castenholzii. Photosynth Res. doi:10.1007/s11120-015-0179-9
Oelze J, Golecki JR (1995) Membrane and chlorosomes of green bacteria: structure, composition and development. In: Blankenship RE, Madigan MT, Bauer CE (eds) Anoxygenic photosynthetic bacteria, vol 2. Kluwer Academic Publishers, Dordrecht/Boston/London, pp 259–272
Olbrich C, Jansen TLC, Liebers J, Aghtar M, Strumpfer J, Schulten K, Knoester J, Kleinekathofer U (2011) From atomistic modeling to excitation transfer and two-dimensional spectra of the FMO light-harvesting complex. J Phys Chem B 115:8609–8621
Orf GS, Blankenship RE (2013) Chlorosome antenna complexes from green photosynthetic bacteria. Photosynth Res 116:315–331
Pedersen MO, Linnanto J, Frigaard NU, Nielsen NC, Miller M (2010) A model of the protein pigment baseplate complex in chlorosomes of photosynthetic green bacteria. Photosynth Res 104:233–243
Psencik J, Butcher SJ, Tuma R (2014) Chlorosomes: structure, function and assembly. In: Hohmann-Marriott MF (ed) The structural basis of biological energy generation. Advances in photosynthesis and respiration, vol 39. Springer, New York, pp 77–109
Remigy H, Fotiadis D, Hauska G, Wolpensinger B, Muller SA, Engel A, Tsiotis G (1998) Evidence for the association of three FMO subunits per reaction center of Chlorobium tepidum by scanning transmission electron microscopy. In: Garab G (ed) Photosynthesis: mechanisms and effects, vol 1. Kluwer Academic Publishers, Dordrecht, pp 125–128
Remigy HW, Stahlberg H, Fotiadis D, Müller SA, Wolpensinger B, Engel A, Hauska G, Tsiotis G (1999) The reaction center complex from the green sulfur bacterium Chlorobium tepidum: a structural analysis by scanning transmission electron microscopy. J Mol Biol 290:851–858
Remigy HW, Hauska G, Muller SA, Tsiotis G (2002) The reaction centre from green sulfur bacteria: progress towards structural elucidation. Photosynth Res 71:91–98
Scheres SHW (2012a) RELION: implementation of a Bayesian approach to cryo-EM structure determination. J Struct Biol 180:519–530
Scheres SHW (2012b) A Bayesian view on Cryo-EM structure determination. J Mol Biol 415:406–418
Scheuring S, Levy D, Rigaud J-L (2005) Watching the components of photosynthetic bacterial membranes and their in situ organisation by atomic force microscopy. Biochim Biophys Acta 1712:109–127
Schmidt am Busch M, Muh F, Madjet ME, Renger T (2011) The eighth bacteriochlorophyll completes the excitation energy funnel in the FMO protein. J Phys Chem Lett 2:93–98
Seo D, Tomioka A, Kusumoto N, Kamo M, Enami I, Sakurai H (2001) Purification of ferredoxins and their reaction with purifed reaction center complex from the green sulfur bacterium Chlorobium tepidum. Biochim Biophys Acta 1503:377–384
Shaikh TR, Gao H, Baxter WT, Asturias FJ, Boisset N, Leith A, Frank J (2008) SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nat Protoc 3:1941–1974
Sprague SG, Staehelin LA, Dibartolomeis MJ, Fuller RC (1981) Isolation and development of chlorosomes in the green bacterium Chloroflexus aurantiacus. J Bacteriol 147:1021–1031
Swarthoff T, Amesz J (1979) Photochemically active pigment-protein complexes from the green photosynthetic bacterium Prosthecochloris aestuarii. Biochim Biophys Acta 548:427–432
Tronrud DE, Schmid MF, Matthews BW (1986) Structure and X-ray amino acid sequence of a bacteriochlorophyll a protein from Prosthecochloris aestuarii refined at 1.9 Å resolution. J Mol Biol 188:443–454
Tronrud DE, Wen J, Gay L, Blankenship RE (2009) The structural basis for the difference in absorbance spectra for the FMO antenna protein from various green sulfur bacteria. Photosynth Res 100:79–87
Tsiotis G, Hager-Braun C, Wolpensinger B, Engel A, Hauska G (1997) Structural analysis of the reaction center from green sulfur bacterium Chlorobium tepidum. Biochim Biophys Acta 1322:163–172
Tsukatani Y, Miyamoto R, Itoh S, Oh-oka H (2004) Function of a PscD subunit in a homodimeric reaction center complex of the photosynthetic green sulfur bacterium Chlorobium tepidum studied by insertional gene inactivation - Regulation of energy transfer and ferredoxin-mediated NADP(+) reduction on the cytoplasmic side. J Biol Chem 279:51122–51130
Tsukatani Y, Wen JZ, Blankenship RE, Bryant DA (2010) Characterization of the FMO protein from the aerobic chlorophototroph, Candidatus Chloracidobacterium thermophilum. Photosynth Res 104:201–209
Umena Y, Kawakami K, Shen JR, Kamiya N (2011) Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å. Nature 473:55–60
van Gemerden H, Mas J (1995) Ecology of phototrophic sulfur bacteria. In: Blankenship RE, Madigan MT, Bauer CE (eds) Anoxygenic photosynthetic bacteria. Kluwer Academic Publishers, Dordrecht/Boston/London, pp 259–272
van Heel M, Frank J (1981) Use of multivariate statistics in analyzing the images of biological macromolecules. Ultramicroscopy 6:187–194
Wahlund TM, Woese CR, Castenholz RW, Madigan MT (1991) A thermophilic green sulfur bacterium from New Zealand hot-springs, Chlorobium tepidum sp. nov. Arch Microbiol 156:81–90
Wen J, Zhang H, Gross ML, Bankenship RE (2009) Membrane orientation of the FMO antenna protein from Chlorobaculum tepidum as determined by mass spectrometry-based footprinting. Proc Natl Acad Sci USA 106:16134–16139
Wen J, Zhang H, Gross ML, Blankenship RE (2011) Native electrospray mass spectrometry reveals the nature and stoichiometry of pigments in the FMO antenna protein. Biochemistry 50:3502–3511
Wittmershaus BP, Brune DC, Blankenship RE (1988) Energy transfer in Chloroflexus aurantiacus: effects of temperature and anaerobic conditions. In: Scheer H, Schneider S (eds) Photosynthetic light-harvesting systems. Walter de Gruyter, Berlin, pp 543–554
Zhou W, LoBrutto R, Lin S, Blankenship RE (1994) Redox effects on the bacteriochlorophyll a-containing Fenna–Matthews–Olson protein from Chlorobium tepidum. Photosynth Res 41:89–96
Acknowledgments
We are indebted to Dr. Jakub Pšenčík (Charles University in Prague) for fruitful discussions and to Dr. Gregory Orf and Dr. Robert Blankenship (Washington University in St. Louis) for critical reading of the manuscript. The research was supported by Czech Science Foundation project P501/12/G055 and institutional support RVO:60077344. Skilled technical assistance of František Matoušek is also gratefully acknowledged.
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Bína, D., Gardian, Z., Vácha, F. et al. Native FMO-reaction center supercomplex in green sulfur bacteria: an electron microscopy study. Photosynth Res 128, 93–102 (2016). https://doi.org/10.1007/s11120-015-0205-y
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DOI: https://doi.org/10.1007/s11120-015-0205-y
Keywords
- FMO (Fenna–Matthews–Olson protein)
- Chlorosome
- Light-harvesting complex
- Reaction center
- Electron microscopy
- Green sulfur bacteria