Abstract
Increasing global water deficit and demand for yield improvement call for high-resolution monitoring of irrigation, crop water stress, and crops' general condition. To provide high spatial resolution with high-temperature accuracy, remote sensing is conducted at low altitudes using radiometric longwave thermal infrared cameras. However, the radiometric cameras' price, and the low altitude leading to low coverage in a given time, limit the use of radiometric aerial surveys for agricultural needs. This paper presents progress toward solving both limitations using algorithmic and computational imaging methods: stabilizing the readout of low-cost thermal cameras to obtain radiometric data, and improving the latter's low resolution by applying convolutional neural network-based super-resolution. The two methods were merged by an end-to-end algorithm pipeline, providing a large mosaicked image of the field. First, the potential capabilities of a joint estimation method to correct unknown offset and gain were simulated on remotely sensed agricultural data. Comparison to ground-truth measurements showed radiometric accuracy with a root mean square error (RMSE) of 1.3 °C to 1.8 °C. Then, the proposed super-resolution method was demonstrated on experimental and simulated remotely sensed agricultural data. Preliminary experimental results showed 50% improvement in image sharpness relative to bicubic interpolation. The performance of the algorithm was evaluated on 22 simulated cases at × 2 and × 4 magnification. Finally, image mosaicking using the proposed pipeline was demonstrated. A mosaicked image composed of sub-images pre-processed by the proposed computational methods resulted in a RMSE in temperature of 0.8 °C, as compared to 8.2 °C without the initial processing.
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Alchanatis, V., Cohen, Y., Cohen, S., Möller, M., Sprinstin, M., Meron, M., et al. (2010). Evaluation of different approaches for estimating and mapping crop water status in cotton with thermal imaging. Precision Agriculture, 11, 27–41.
Ben-Gal, A., Kool, D., Agam, N., van Halsema, G. E., Yermiyahu, U., Yafe, A., et al. (2010). Whole-tree water balance and indicators for short-term drought stress in non-bearing 'Barnea’ olives. Agricultural Water Management, 98, 124–133. https://doi.org/10.1016/j.agwat.2010.08.008.
Berni, J. A. J., Zarco-Tejada, P. J., Sepulcre-Canto, G., Fereres, E., & Villalobos, F. (2009). Mapping canopy conductance and CWSI in olive orchards using high resolution thermal remote sensing imagery. Remote Sensing of Environment, 113, 2380–2388.
Bhan, R. K., Saxena, R. S., Jalwania, C. R., & Lomash, S. K. (2009). Uncooled infrared microbolometer arrays and their characterisation techniques. Defence Science Journal, 59(6), 580–589.
Cohen, Y., Alchanatis, V., Meron, M., Saranga, Y., & Tsipris, J. (2005). Estimation of leaf water potential by thermal imagery and spatial analysis. Journal of Experimental Botany, 56(417), 1843–1852.
Cohen, Y., Alchanatis, V., Prigojin, A., Levi, A., & Soroker, V. (2012). Use of aerial thermal imaging to estimate water status of palm trees. Precision Agriculture. https://doi.org/10.1007/s11119-011-9232-7.
Costa, J. M., Grant, O. M., & Chaves, M. M. (2013). Thermography to explore plant–environment interactions. Journal of Experimental Botany, 64(13), 3937–3949.
Dong, C., Loy, C. C., He, K., & Tang, X. (2014). Learning a deep convolutional network for image super-resolution. In D. Fleet, T. Pajdla, B. Schiele, & T. Tuytelaars (Eds.), Computer vision—ECCV 2014. ECCV 2014. Lecture notes in computer science (Vol 8692, pp. 184–199). Cham: Springer.
Ehrler, W. L. (1973). Cotton leaf temperatures as related to soil water depletion and meteorological factors. Agronomy Journal, 65, 404–409.
Elad, M., & Feuer, A. (1997). Restoration of a single super-resolution image from several blurred, noisy, and undersampled measured images. IEEE Transactions on Image Processing, 6, 1646–1658.
Farsiu, S., Dirk Robinson, M., Elad, M., & Milanfar, P. (2004). Fast and robust multiframe super resolution. IEEE Transactions on Image Processing, 13, 1327–1343.
Gates, D. M. (1964). Leaf temperature and transpiration. Agronomy Journal, 56, 273–277.
Grant, O. M., Tronina, L., Jones, H. G., & Chaves, M. M. (2007). Exploring thermal imaging variables for the detection of stress responses in grapevine under different irrigation regimes. Journal of Experimental Botany, 58, 815–825.
Holman, J. P. (1989). Heat transfer. Boston: McGraw Hill.
Jia, W., Zhang, H., He, X., & Wu, Q. (2006). A comparison on histogram based image matching methods. In 2006 IEEE International Conference on Video and Signal Based Surveillance, Sydney, Australia (pp. 97–97). https://doi.org/10.1109/AVSS.2006.5
Jones, H. G. (1994). Plant and microclimate (2nd ed.). Cambridge, UK: Cambridge University Press.
Kim, J., Lee, J. K., & Lee, K. M. (2016). Accurate image super-resolution using very deep convolutional networks. In 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR). https://doi.org/10.1109/CVPR.2016.182
Klapp, I., Brand, O., Yafin, P., Papini, S., Oz, N., Bahat, I., et al. (2019). Using computational optics for agricultural monitoring with an emphasis on irrigation management zones. In J. V. Stafford (Ed.), Precision agriculture ’19. Wageningen: Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-888-9_82
Klapp, I., Papini, S., & Sochen, N. (2017). Radiometric imaging by double exposure and gain calibration. Applied Optics, 56, 5639–5647.
Kopeika, N. S. (1998). A system engineering approach to imaging. Bellingham, WA: SPIE Optical Engineering Press.
Kusnierek, K., & Korsaeth, A. (2014). Challenges in using an analog uncooled microbolometer thermal camera to measure crop temperature. International Journal of Agricultural and Biological Engineering, 7, 60–74.
LSQR (2018). Sparse Equations and Least Squares. Retrieved September 15, 2020, from https://web.stanford.edu/group/SOL/software/lsqr/.
Mandanici, E., Tavasci, L., Corsini, F., & Gandolfi, S. (2019). A multi-image super-resolution algorithm applied to thermal imagery. Applied Geomatics, 11, 215–228.
Manickavasagan, A., Digvir, J. S., White, N. D. G., & Paliwal, J. (2005). Applications of thermal imaging in agriculture—a review. In: CSAE/SCGR 2005 Meeting, Paper No. 05–002. Retrieved September 15, 2020, from https://www.csbe-scgab.ca/docs/meetings/2005/05-002.pdf.
Mendelowitz, S., Klapp, I., & Mendlovic, D. (2013). Design of an image restoration algorithm for the TOMBO imaging system. Journal of the Optical Society of America A, 30, 1193–1204.
Nugent, P. W., & Shaw, J. A. (2014). Calibration of uncooled LWIR microbolometer imagers to enable long-term field deployment. In: Proceedings, Infrared imaging systems: design, analysis, modeling, and testing XXV (Vol 9071, p. 90710V). https://doi.org/10.1117/12.2053082
Oz, N., Sochen, N., & Klapp, I. (2020). Rapid super resolution for infrared imagery. Optics Express. https://doi.org/10.1364/OE.389926.
Papini, S., Yafin, P., Klapp, I., & Sochen, N. (2018). Joint estimation of unknown radiometric data, gain and offset from thermal images. Applied Optics, 57, 10390–10401.
Petrović, I., Marjanović, M., Ćosić, M., Savić, S., & Cvijanović, S. (2016). Infra-red thermography for detecting drought in agriculture crops and scheduling irrigation. Economics of Agriculture, 2, 461–469.
Rivenson, Y., Göröcs, Z., Günaydin, H., Zhang, Y., Wang, H., & Ozcan, A. (2017). Deep learning microscopy. Optica, 4(11), 1437–1443.
Sun, J., Xu, Z., & Shum, H.-Y. (2008). Image super-resolution using gradient profile prior. In 2008 IEEE Conference on Computer Vision and Pattern Recognition. https://doi.org/10.1109/CVPR.2008.4587659
Tanner, C. B. (1963). Plant temperatures. Agronomy Journal, 55, 210–211.
Tempelhahn, A., Budzier, H., Krause, V., & Gerlach, G. (2016). Shutter-less calibration of uncooled infrared cameras. Journal of Sensors and Sensor Systems, 5, 916.
Tilling, K., O’Leary, G. J., Ferwerda, J. G., Jones, S. D., Fitzgerald, G. J., Rodriguez, D., et al. (2007). Remote sensing of nitrogen and water stress in wheat. Field Crops Research, 104, 77–85.
United Nations (2017). Water for sustainable food and agriculture. Rome: FAO, ISBN 978-92-5-109977-3
Vidal, D., & Pitarma, R. (2019). Infrared thermography applied to tree health assessment: A review. Agriculture, 9(7), 156. https://doi.org/10.3390/agriculture9070156.
Zhou, J., Kwan, C., & Budavari, B. (2016). Hyperspectral image super-resolution: A hybrid color mapping approach. Journal of Applied Remote Sensing. https://doi.org/10.1117/1.JRS.10.035024.
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The authors would like to thank the Israeli Ministry of Agriculture's Kandel Program for funding this research under Grant No. 20-12-0030.
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Klapp, I., Yafin, P., Oz, N. et al. Computational end-to-end and super-resolution methods to improve thermal infrared remote sensing for agriculture. Precision Agric 22, 452–474 (2021). https://doi.org/10.1007/s11119-020-09746-y
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DOI: https://doi.org/10.1007/s11119-020-09746-y