Abstract
Medicago truncatula may be used as a model plant to study the pathosystem Vicia faba/Botrytis spp. This study aims to investigate the profiling of the transcription factors (TFs) of M. truncatula involved in the interaction with Botrytis cinerea and Botrytis fabae. The response of two genotypes of M. truncatula to the pathogens was first established, defining genotype A17 as partially resistant and genotype Esp162 as susceptible. We found that B. fabae is more aggressive as a pathogen of M. truncatula than B. cinerea. The profiling of the TFs involved in the interaction was subsequently carried out using an available genome guide qPCR-based platform for the quantitative measurement of 1,084 M. truncatula TFs. Microscopic studies showed that the infection process had started 24 h after inoculation. A total of 126 TFs showed significant differences in their expression after inoculation irrespective of the genotype, while 37 TFs were differentially expressed between the resistant and the susceptible genotypes and 70 TFs showed different levels of expression between the genotypes unaltered by infection. This has allowed characterization at the transcriptional regulation level of the differential response of two genotypes of M. truncatula to two very similar pathogens differing in their aggressiveness. These results will be valuable to increase the functional knowledge of the M. truncatula genome and to help in breeding programmes of V. faba for resistance to Botrytis spp.
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References
Bustos R, Castrillo G, Linhares F, Isabel Puga M, Rubio V, Perez-Perez J, Solano R, Leyva A, Paz-Ares J (2010) A central regulatory system largely controls transcriptional activation and repression responses to phosphate starvation in Arabidopsis. Plos Genet 6:e1001102
Czechowski T, Bari RP, Stitt M, Scheible WR, Udvardi MK (2004) Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J 38:366–379
Die JV, Verdejo CIG, Dita MA, Nadal S, Roman B (2009) Gene expression analysis of molecular mechanisms of defense induced in Medicago truncatula parasitized by Orobanche crenata. Plant Physiol Biochem 47:635–641
Dietz KJ, Vogel MO, Viehhauser A (2010) AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling. Protoplasma 245:3–14
Dubos C, Stracke R, Grotewold E, Weisshaar B, Martin C, Lepiniec L (2010) MYB transcription factors in Arabidopsis. Trends Plant Sci 15:573–581
Duc G, Bao S, Baum M, Redden B, Sadiki M, Jose Suso M, Vishniakova M, Zong X (2010) Diversity maintenance and use of Vicia faba L. genetic resources. Field Crop Res 115:270–278
Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A 95:14863–14868
Ellwood S, Kamphuis LG, Pfaff T, Oliver R, Samac D, Forster-Harnett BD, Tivoli B, Onfroy C, Moussart A, Villegas-Fernandez AM, Sillero JC, Rubiales D (2007) Inoculation and growth with foliar pathogenic fungi. Medicago Handbook
Eulgem T (2006) Dissecting the WRKY web of plant defense regulators. PLoS Pathog 2:e126
Evidente A, Superchi S, Cimmino A, Mazzeo G, Mugnai L, Rubiales D, Andolfi A, Villegas-Fernandez AM (2011) Regiolone and isosclerone, two enantiomeric phytotoxic naphthalenone pentaketides: computational assignment of absolute configuration and its relationship with phytotoxic activity. Eur J Org Chem 28:5564–5570
Fernandez-Aparicio M, Shtaya MJY, Emeran AA, Allagui MB, Kharrat M, Rubiales D (2011) Effects of crop mixtures on chocolate spot development on faba bean grown in Mediterranean climates. Crop Prot 30:1015–1023
Ferreira RB, Monteiro S, Freitas R, Santos CN, Chen ZJ, Batista LM, Duarte J, Borges A, Teixeira AR (2006) Fungal pathogens: the battle for plant infection. Crit Rev Plant Sci 25:505–524
Fode B, Siemsen T, Thurow C, Weigel R, Gatz C (2008) The Arabidopsis GRAS protein SCL14 interacts with class II TGA transcription factors and is essential for the activation of stress-inducible promoters. Plant Cell 20:3122–3135
Gao L-L, Kamphuis LG, Kakar K, Edwards OR, Udvardi MK, Singh KB (2010) Identification of potential early regulators of aphid resistance in Medicago truncatula via transcription factor expression profiling. New Phytol 186:980–994
Hadwiger LA (2008) Pea-Fusarium solani interactions contributions of a system toward understanding disease resistance. Phytopathology 98:372–379
Harrison JG (1988) The biology of Botrytis spp. on Vicia beans and chocolate spot disease—a review. Plant Pathol 37:168–201
Holub EB, Cooper A (2004) Matrix, reinvention in plants: how genetics is unveiling secrets of non-host disease resistance. Trends Plant Sci 9:211–214
Iwase A, Matsui K, Ohme-Takagi M (2009) Manipulation of plant metabolic pathways by transcription factors. Plant Biotechnol 26:29–38
Jensen MK, Kjaersgaard T, Nielsen MM, Galberg P, Petersen K, O’Shea C, Skriver K (2010) The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling. Biochem J 426:183–196
Kakar K, Wandrey M, Czechowski T, Gaertner T, Scheible WR, Stitt M, Torres-Jerez I, Xiao YL, Redman JC, Wu HC, Cheung F, Town CD, Udvardi MK (2008) A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula. Plant Methods 4:18
Kielbowicz-Matuk A (2012) Involvement of plant C2H2-type zinc finger transcription factors in stress responses. Plant Sci 185:78–85
Lipka U, Fuchs R, Lipka V (2008) Arabidopsis non-host resistance to powdery mildews. Curr Opin Plant Biol 11:404–411
Madrid E, Gil J, Rubiales D, Krajinski F, Schlereth A, Millan T (2010) Transcription factor profiling leading to the identification of putative transcription factors involved in the Medicago truncatula–Uromyces striatus interaction. Theor Appl Genet 121:1311–1321
Nurnberger T, Lipka V (2005) Non-host resistance in plants: new insights into an old phenomenon. Mol Plant Pathol 6:335–345
Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP (2004) Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper—Excel-based tool using pair-wise correlations. Biotechnol Lett 26:509–515
Ramakers C, Ruijter JM, Deprez RHL, Moorman AFM (2003) Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett 339:62–66
Rispail N, Kalo P, Kiss GB, Ellis THN, Gallardo K, Thompson RD, Prats E, Larrainzar E, Ladrera R, Gonzalez EM, Arrese-Igor C, Ferguson BJ, Gresshoff PM, Rubiales D (2010) Model legumes contribute to faba bean breeding. Field Crop Res 115:253–269
Rose RJ (2008) Medicago truncatula as a model for understanding plant interactions with other organisms, plant development and stress biology: past, present and future. Funct Plant Biol 35:253–264
Rubiales D (2010) Faba beans in sustainable agriculture—introduction. Field Crop Res 115:201–202
Rubiales D, Moral A (2004) Prehaustorial resistance against alfalfa rust (Uromyces striatus) in Medicago truncatula. Eur J Plant Pathol 110:239–243
Sillero JC, Villegas-Fernandez AM, Thomas J, Rojas-Molina MM, Emeran AA, Fernandez-Aparicio M, Rubiales D (2010) Faba bean breeding for disease resistance. Field Crop Res 115:297–307
Singh RJ, Chung GH, Nelson RL (2007) Landmark research in legumes. Genome 50:525–537
Staats M, van Baarlen P, van Kan JAL (2005) Molecular phylogeny of the plant pathogenic genus Botrytis and the evolution of host specificity. Mol Biol Evol 22:333–346
Stoddard FL, Nicholas AH, Rubiales D, Thomas J, Villegas-Fernandez AM (2010) Integrated pest management in faba bean. Field Crop Res 115:308–318
Tivoli B, Baranger A, Avila CM, Banniza S, Barbetti M, Chen WD, Davidson J, Lindeck K, Kharrat M, Rubiales D, Sadiki M, Sillero JC, Sweetingham M, Muehlbauer FJ (2006a) Screening techniques and sources of resistance to foliar diseases caused by major necrotrophic fungi in grain legumes. Euphytica 147:223–253
Tivoli B, Baranger A, Sivasithamparam K, Barbetti MJ (2006b) Annual medicago: from a model crop challenged by a spectrum of necrotrophic pathogens to a model plant to explore the nature of disease resistance. Ann Bot 98:1117–1128
Udvardi MK, Kakar K, Wandrey M, Montanari O, Murray J, Andriankaja A, Zhang JY, Benedito V, Hofer JMI, Chueng F, Town CD (2007) Legume transcription factors: global regulators of plant development and response to the environment. Plant Physiol 144:538–549
Uma B, Rani TS, Podile AR (2011) Warriors at the gate that never sleep: non-host resistance in plants. J Plant Physiol 168:2141–2152
Varshney RK, Close TJ, Singh NK, Hoisington DA, Cook DR (2009) Orphan legume crops enter the genomics era! Curr Opin Plant Biol 12:202–210
Verdier J, Kakar K, Gallardo K, Le Signor C, Aubert G, Schlereth A, Town CD, Udvardi MK, Thompson RD (2008) Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling. Plant Mol Biol 67:567–580
Villegas-Fernández AM, Sillero JC, Emeran AA, Winkler J, Raffiot B, Tay J, Flores F, Rubiales D (2009) Identification and multi-environment validation of resistance to Botrytis fabae in Vicia faba. Field Crop Res 114:84–90
Villegas-Fernandez AM, Sillero JC, Rubiales D (2012) Screening faba bean for chocolate spot resistance: evaluation methods and effects of age of host tissue and temperature. Eur J Plant Pathol 132:443–453
Williamson B, Tudzynsk B, Tudzynski P, van Kan JAL (2007) Botrytis cinerea: the cause of grey mould disease. Mol Plant Pathol 8:561–580
Young ND, Udvardi M (2009) Translating Medicago truncatula genomics to crop legumes. Curr Opin Plant Biol 12:193–201
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Villegas-Fernández, Á.M., Krajinski, F., Schlereth, A. et al. Characterization of Transcription Factors Following Expression Profiling of Medicago truncatula–Botrytis spp. Interactions. Plant Mol Biol Rep 32, 1030–1040 (2014). https://doi.org/10.1007/s11105-014-0710-8
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DOI: https://doi.org/10.1007/s11105-014-0710-8