Abstract
We describe a modification of a protocol for the isolation of BAC DNA using a silica membrane-based kit designed for the isolation of plasmid DNA. The major advantages of this protocol are the expediency of the procedure, the high yield and purity, and the high quality of the BAC DNA that is suitable for direct sequencing.
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Birnboim HC, Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 1979;7:1513–23.
Boom R, Sol CJA, Salimans MMM, Jansen CL, Wertheim-van Dillen PME, van der Noordaa J. Rapid and simple method for purification of nucleic acids. J Clin Microbiol 1990;28:495–503.
Frijters ACJ, Zhang Z, van Damme M, Wang GL, Ronald PC, Michelmore RW. Construction of a bacterial artificial chromosome library containing large EcoRI and HindIII genomic fragments of lettuce. Theor Appl Genet 1997;94:90–399.
Gelsthorpe AR, Gelsthorpe K, Sokol RJ. Extraction of DNA using monoclonal anti-DNA and magnetic beads. BioTechniques 1997;22:1080–2.
Marko MA, Chipperfield R, Birnboim HC. A procedure for the large-scale isolation of highly purified plasmid DNA using alkaline extraction and binding to glass powder. Anal Biochem 1982;121:382–7.
Marra MA, Kucaba TA, Dietrich NL, Green ED, Brownstein B, Wilson RK, et al. High throughput fingerprint analysis of large-insert clones. Genome Res 1997;7:1072–84.
Shizuya H, Birren B, Kim U, Mancino V, Slepak T, Tachiiri Y, Simon M. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc Natl Acad Sci USA 1992;89:8794–7.
Vallejos CE, Astua-Monge G, Jones V, Plyler TR, Sakiyama NS, Mackenzie SA. Genetic and molecular characterization of the I locus of Phaseolus vulgaris. Genetics 2006;172:1229–42.
Vanhouten W, Mackenzie SA. Construction and characterization of a common bean bacterial artificial chromosome library. Plant Mol Biol 1999;40:977–83.
Walsh PS, Metzger DA, Higuchi R. Chelex® 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques 1991;10:506–13.
Wild J, Sektas M, Hradecna Z, Szybalski W. Targeting and retrofitting pre-existing libraries of transposon insertions with FRT and oriV elements for in-vivo generation of large quantities of any genomic fragment. Gene 1998;223:55–66.
Wild J, Hradecna Z, Szybalski W. Conditionally amplifiable BACs: switching from single-copy to high-copy vectors and genomic clones. Genome Res 2002;12:1434–44.
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This work was supported in part by USDA Grant no. 97121514 and by the Florida Agricultural Experiment Station.
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Vallejos, C.E., Sakiyama, N.S., Jones, V. et al. Adaptation of a Silica Membrane-based Kit for Purification of Sequencing-ready BAC DNA. Plant Mol Biol Rep 25, 11–16 (2007). https://doi.org/10.1007/s11105-007-0001-8
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DOI: https://doi.org/10.1007/s11105-007-0001-8