Skip to main content
Log in

Microbial activity and community composition in saline and non-saline soils exposed to multiple drying and rewetting events

  • Regular Article
  • Published:
Plant and Soil Aims and scope Submit manuscript

Abstract

Background and aims

The effects of drying and rewetting (DRW) have been studied extensively in non-saline soils, but little is known about the impact of DRW in saline soils. An incubation experiment was conducted to determine the impact of 1–3 drying and re-wetting events on soil microbial activity and community composition at different levels of electrical conductivity in the saturated soil extract (ECe) (ECe 0.7, 9.3, 17.6 dS m−1).

Methods

A non-saline sandy loam was amended with NaCl to achieve the three EC levels 21 days prior to the first DRW; wheat straw was added 7 days prior to the first DRW. Each DRW event consisted of 1 week drying and 1 week moist (50% of water holding capacity, WHC). After the last DRW, the soils were maintained moist until the end of the incubation period (63 days after addition of the wheat straw). A control was kept moist (50% of WHC) throughout the incubation period.

Results

Respiration rates on the day after rewetting were similar after the first and the second DRW, but significantly lower after the third DRW. After the first and second DRW, respiration rates were lower at EC17.6 compared to the lower EC levels, whereas salinity had little effect on respiration rates after the third DRW or at the end of the experiment when respiration rates were low. Compared to the continuously moist treatment, respiration rates were about 50% higher on day 15 (d15) and d29. On d44, respiration rates were about 50% higher at EC9.7 than at the other two EC levels. Cumulative respiration was increased by DRW only in the treatment with one DRW and only at the two lower EC levels. Salinity affected microbial biomass and community composition in the moist soils but not in the DRW treatments. At all EC levels and all sampling dates, the community composition in the continuously moist treatment differed from that in the DRW treatments, but there were no differences among the DRW treatments.

Conclusions

Microbes in moderately saline soils may be able to utilise substrates released after multiple DRW events better than microbes in non-saline soil. However, at high EC (EC17.6), the low osmotic potential reduced microbial activity to such an extent that the microbes were not able to utilise substrate released after rewetting of dry soil.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Abed RMM, Kohls K, De Beer D (2007) Effect of salinity changes on the bacterial diversity, photosynthesis and oxygen consumption of cyanobacterial mats from an intertidal flat of the Arabian Gulf. Environ Microbiol 9:1384–1392

    Article  PubMed  CAS  Google Scholar 

  • Beales N (2004) Adaptation of microorganisms to cold temperatures, weak acid preservatives, low pH, and osmotic stress: A review. Compreh Rev Food Sci Food Safety 3:1–20

    Article  CAS  Google Scholar 

  • Butterly CR, Buenemann EK, McNeill AM, Baldock JA, Marschner P (2009a) Phosphorus and carbon dynamics during repeated drying and rewetting of soils with different microbial biomass. Soil Biol Biochem 41:1406–1416

    Article  CAS  Google Scholar 

  • Butterly CR, Bunemann EK, McNeill AM, Baldock JA, Marschner P (2009b) Carbon pulses but not phosphorus pulses are related to decreases in microbial biomass during repeated drying and rewetting of soils. Soil Biol Biochem 41:1406–1416

    Article  CAS  Google Scholar 

  • Chowdhury N, Marschner P, Burns R G (2011a) Response of microbial activity and community structure to decreasing soil osmotic and matric potential. Plant Soil (in press).

  • Chowdhury N, Marschner P, Burns RG (2011b) Soil microbial activity and community composition: impact of changes in matric and osmotic potential. Soil Biol Biochem 40:1299–1236

    Google Scholar 

  • Chowdhury N, Burns RG, Marschner P (2011c) Recovery of soil respiration after drying. Plant Soil (in press)

  • Clarke KR, Warwick RM (2001) Change in marine communities: an approach to statistical analysis and interpretation. Primer-E, Plymouth

    Google Scholar 

  • De Nobili M, Contin M, Mondini C, Brookes PC (2001) Soil microbial biomass is triggered into activity by trace amounts of substrate. Soil Biol Biochem 33:1163–1170

    Article  Google Scholar 

  • Denef K, Six J, Bossuyt H, Frey SD, Elliott ET, Merckx R, Paustian K (2001a) Influence of dry-wet cycles on the interrelationship between aggregate, particulate organic matter, and microbial community dynamics. Soil Biol Biochem 33:1599–1611

    Article  CAS  Google Scholar 

  • Denef K, Six J, Paustian K, Merckx R (2001b) Importance of macroaggregate dynamics in controlling soil carbon stabilization: short-term effects of physical disturbance induced by dry-wet cycles. Soil Biol Biochem 33:2145–2153

    Article  CAS  Google Scholar 

  • Fierer N, Schimel JP (2002) Effect of drying-rewetting frequency on soil carbon and nitrogen transformations. Soil Biol Biochem 34:777–787

    Article  CAS  Google Scholar 

  • Fierer N, Schimel JP (2003) A proposed mechanism for the pulse in carbon dioxide production commonly abserved following the rapid rewetting of a dry soil. Soil Sci Soc Am J 67:798–805

    Article  CAS  Google Scholar 

  • Fierer N, Schimel JP, Holden PA (2003) Influence of drying-rewetting frequency on soil bacterial community structure. Microb Ecol 45:63–71

    Article  PubMed  CAS  Google Scholar 

  • Franzluebbers K, Weaver RW, Juo ASR, Franzluebbers AJ (1994) Carbon and nitrogen mineralization from cowpea plant parts decomposing in moist and in repeatedly dried and wetted soil. Soil Biol Biochem 26:1379–1387

    Article  Google Scholar 

  • Frostegård A, Bååth E, Tunlid A (1993) Shifts in the strucutre of soil microbial communities in limed forests as revealed by phospholipid fatty acid analysis. Soil Biol Biochem 25:723–730

    Article  Google Scholar 

  • Gennari M, Abbate C, La Porta V, Baglieri A (2007) Microbial response to Na2SO4 additions in a volcanic soil. Arid Land Res Manag 21:211–227

    Article  CAS  Google Scholar 

  • Gros R, Poly F, Jocteur-Monrozier L, Faivre P (2003) Plant and soil microbial community responses to solid waste leachates diffusion on grassland. Plant Soil 255:445–455

    Article  CAS  Google Scholar 

  • Hagemann M (2011) Molecular biology of cyanobacterial salt acclimation. FEMS Microbiol Rev 35:87–123

    Article  PubMed  CAS  Google Scholar 

  • Halverson LJ, Jones TM, Firestone MK (2000) Release of intracellular solutes by four soil bacteria exposed to dilution stress. Soil Sci Soc Am J 64:1630–1637

    Article  CAS  Google Scholar 

  • Hamer U, Unger M, Makeschin F (2007) Impact of air-drying and rewetting on PLFA profiles of soil microbial communities. J Plant Nutr Soil Sci 170:259–264

    Article  CAS  Google Scholar 

  • Hoyle FC, Murphy DV, Brookes PC (2008) Microbial response to the addition of glucose in low-fertility soils. Biol Fertil Soils 44:571–579

    Article  CAS  Google Scholar 

  • Kandeler E (2007) Physiological and biochemical methods for studying soil biota and their function. In: Soil Microbiology, ecology, and biochemistry. Ed. E A Paul. pp 53–84. Elsevier

  • Kieft TL, Soroker E, Firestone MK (1987) Microbial biomass response to a rapid increase in water potential when dry soil is wetted. Soil Biol Biochem 19:119–126

    Article  Google Scholar 

  • Killham K, Firestone MK (1984) Salt stress control of intracellular solutes in Streptomycetes indigenous to saline soils. Appl Environ Microbiol 47:301–306

    PubMed  CAS  Google Scholar 

  • Lal R (2001) Potential of desertification control to sequester carbon and mitigate the greenhouse effect. Clim Change 51:35–72

    Article  Google Scholar 

  • Lambers H (2003) Dryland salinity: a key environmental issue in southern Australia. Plant Soil 257:v–vii

    Article  CAS  Google Scholar 

  • Llamas DP, Gonzales MD, Gonzales CI, Lopez GR, Marquina JC (2008) Effects of water potential on spore germination and viability of Fusarium species. J Industr Microbiol Biotechnol 35:1411–1418

    Article  Google Scholar 

  • Mandeel QA (2006) Biodiversity of the genus Fusarium in saline soil habitats. J Basic Microbiol 46:480–494

    Article  PubMed  Google Scholar 

  • Mikha MM, Rice CW, Milliken GA (2005) Carbon and nitrogen mineralization as affected by drying and wetting cycles. Soil Biol Biochem 37:339–347

    Article  CAS  Google Scholar 

  • Nelson DR, Mele PM (2007) Subtle changes in rhizosphere microbial community structure in response to increased boron and sodium chloride concentrations. Soil Biol Biochem 39:340–351

    Article  CAS  Google Scholar 

  • Oren A (1999) Bioenergetic aspects of halophilism. Microbiol Mol Biol Rev 63:334–348

    PubMed  CAS  Google Scholar 

  • Oren A (2001) The bioenergetic basis for the decrease in metabolic diversity at increasing salt concentrations: implication of the functioning of salt lake ecosystems. Hydrobiologia 466:61–72

    Article  CAS  Google Scholar 

  • Pankhurst CE, Yu S, Hawke BG, Harch BD (2001) Capacity of fatty acid profiles and substrate utilisation patterns to describe differences in soil microbial communities associated with increased salinity or alkalinity at three locations win South Australia. Biol Fertil Soils 33:204–217

    Article  CAS  Google Scholar 

  • Pathak H, Rao DLN (1998) Carbon and nitrogen mineralisation from added organic matter in saline and alkali soils. Soil Biol Biochem 30:695–702

    Article  CAS  Google Scholar 

  • Rengasamy P (2006) Soil salinity and sodicity. In Growing crops with reclaimed wastewater. Ed. D Stevens. pp 125–138. CSIRO

  • Richard LA (1954) Determination of the properties of saline and alkali soils. United States Department of Agriculture Handbook 60, Washington, pp 7–53

    Google Scholar 

  • Schimel JP, Scott WJ, Killham K (1989) Changes in cytoplasmic carbon and nitrogen pools in a soil bacterium and a fungus in response to salt stress. Appl Environ Microbiol 55:1635–1637

    PubMed  CAS  Google Scholar 

  • Schimel JP, Balser TC, Wallenstein M (2007) Microbial stress response physiology and its implications for ecosystem function. Ecology 88:1386–1394

    Article  PubMed  Google Scholar 

  • Setia R, Marschner P, Baldock JS, Chittleborough DJ, Verma V (2011) Relationships between carbon dioxide emission and soil properties in salt affected landscapes. Soil Biol Biochem 43:667–674

    Article  CAS  Google Scholar 

  • Sparling GP, Whale KN, Ramsay AJ (1985) Quantifying the contribution from the soil microbial biomass to the extractable P levels of fresh and air-dried soils. Aust J Soil Res 23:613–621

    Article  CAS  Google Scholar 

  • Tripathi S, Kumari S, Chakraborty A, Gupta A, Chakraborty K, Bandyapadhyay BK (2006) Microbial biomass and its activities in salt-affected coastal soils. Biol Fertil Soils 42:273–277

    Article  Google Scholar 

  • Van Gestel M, Merckx R, Vlassak K (1993) Soil drying and rewetting and the turnover of 14 C-labeled plant residues: first order decay rates of biomass and non-biomass 14 C. Soil Biol Biochem 25:125–134

    Article  Google Scholar 

  • White DC (1995) Chemical ecology: possible linkage between macro- and microbial ecology. Oikos 74:177–184

    Article  Google Scholar 

  • Wichern J, Wichern F, Joergensen RG (2006) Impact of salinity on soil microbial communities and the decomposition of maize in acidic soils. Geoderma 137:100–108

    Article  CAS  Google Scholar 

  • Wilkinson SC, Anderson JM, Scardelis SP, Tisiafouli M, Taylor A, Wolters V (2002) PLFA profiles of microbial communities in decomposing conifer litter subject to moisture stress. Soil Biol Biochem 34:189–200

    Article  CAS  Google Scholar 

  • Williams MA (2007) Resonse of microbial communities to water stress in irrigated and drought-prone tallgrass prairie soils. Soil Biol Biochem 39:2750–2757

    Article  CAS  Google Scholar 

  • Wu J, Brookes PC (2005) The proportional mineralisation of microbial biomass and organic matter by air-drying and rewetting of a grassland soil. Soil Biol Biochem 37:507–515

    Article  CAS  Google Scholar 

  • Xiang SR, Doyle A, Holden PA, Schimel JP (2008) Drying and rewetting effects on C and N mineralisation and microbial activity in surface and subsurface Californian grassland soils. Soil Biol Biochem 40:2281–2289

    Article  CAS  Google Scholar 

  • Zak DR, Pregnitzer KS, Curtis PS, Holmes WE (2000) Atmosperic CO2 and the composition and function of soil microbial communities. Ecol Appl 10:47–59

    Google Scholar 

  • Zelles L, Rackwitz R, Bai QY, Beck T, Beese F (1995) Discrimination of microbial diversity by fatty acid profiles of phospholipids and lipopolysaccharides in differently cultivated soils. Plant Soil 170:115–122

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This study was funded by the Australian Research Council. Nasrin Chowdhury received an Endeavour Australia postgraduate scholarship and Raj Setia a scholarship from The University of Adelaide.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Petra Marschner.

Additional information

Responsible Editor: Hans Lambers.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Chowdhury, N., Nakatani, A.S., Setia, R. et al. Microbial activity and community composition in saline and non-saline soils exposed to multiple drying and rewetting events. Plant Soil 348, 103–113 (2011). https://doi.org/10.1007/s11104-011-0918-4

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11104-011-0918-4

Keywords

Navigation