Plant Molecular Biology

, Volume 90, Issue 6, pp 645–655

Fungal endophytes: modifiers of plant disease


DOI: 10.1007/s11103-015-0412-0

Cite this article as:
Busby, P.E., Ridout, M. & Newcombe, G. Plant Mol Biol (2016) 90: 645. doi:10.1007/s11103-015-0412-0


Many recent studies have demonstrated that non-pathogenic fungi within plant microbiomes, i.e., endophytes (“endo” = within, “phyte” = plant), can significantly modify the expression of host plant disease. The rapid pace of advancement in endophyte ecology warrants a pause to synthesize our understanding of endophyte disease modification and to discuss future research directions. We reviewed recent literature on fungal endophyte disease modification, and here report on several emergent themes: (1) Fungal endophyte effects on plant disease span the full spectrum from pathogen antagonism to pathogen facilitation, with pathogen antagonism most commonly reported. (2) Agricultural plant pathosystems are the focus of research on endophyte disease modification. (3) A taxonomically diverse group of fungal endophytes can influence plant disease severity. And (4) Fungal endophyte effects on plant disease severity are context-dependent. Our review highlights the importance of fungal endophytes for plant disease across a broad range of plant pathosystems, yet simultaneously reveals that complexity within plant microbiomes presents a significant challenge to disentangling the biotic environmental factors affecting plant disease severity. Manipulative studies integrating eco-evolutionary approaches with emerging molecular tools will be poised to elucidate the functional importance of endophytes in natural plant pathosystems that are fundamental to biodiversity and conservation.


Microbiome Disease ecology Context-dependency Biocontrol Alternaria Cladosporium Fusarium Trichoderma Aureobasidium Penicillium 

Supplementary material

11103_2015_412_MOESM1_ESM.docx (75 kb)
Supplementary material 1 (DOCX 76 kb)

Funding information

Funder NameGrant NumberFunding Note
National Science Foundation (US)
  • 1314095
National Institute of Food and Agriculture (US)
  • 2011-68005-30407
U.S. Department of Energy
  • 219086

Copyright information

© Springer Science+Business Media Dordrecht 2015

Authors and Affiliations

  1. 1.Department of BiologyDuke UniversityDurhamUSA
  2. 2.Department of Forest, Rangelands and Fire SciencesUniversity of IdahoMoscowUSA

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