Alabadí D, Oyama T, Yanovsky MJ, Harmon FG, Más P, Kay SA (2001) Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock. Science 293:880–883
Article
PubMed
Google Scholar
Böhlenius H, Huang T, Charbonnel-Campaa L, Brunner AM, Jansson S, Strauss SH, Nilsson O (2006) CO/FT regulatory module controls timing of flowering and seasonal growth cessation in trees. Science 312:1040–1043
Article
PubMed
CAS
Google Scholar
Bünning E (1936) Die endogene Tagesrhythmik als Grudlage der photoperiodischen Reaktion. Ber Deut Bot Ges 54:590–607
Google Scholar
Clack T, Mathews S, Sharrock RA (1994) The phytochrome apoprotein family in Arabidopsis is encoded by five genes: The sequences and expression of PHYD and PHYE. Plant Mol Biol 25:413–427
Article
CAS
PubMed
Google Scholar
Corbesier L, Vincent C, Jang SH, Fornara F, Fan QZ, Searle I, Giakountis A, Farrona S, Gissot L, Turnbull C, Coupland G (2007) FT protein movement contributes to long-distance signaling in floral induction of Arabidopsis. Science 316:1030–1033
Article
CAS
PubMed
Google Scholar
Czechowski T, Bari RP, Stitt M, Scheible WR, Udvardi MK (2004) Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J 38:366–379
Article
CAS
PubMed
Google Scholar
Devlin PF (2002) Signs of the time: environmental input to the circadian clock. J Exp Bot 53:1535–1550
Article
CAS
PubMed
Google Scholar
Dunlap JC (1999) Molecular bases for circadian clocks. Cell 96:271–290
Article
CAS
PubMed
Google Scholar
Eriksson ME, Millar AJ (2003) The circadian clock: a plant’s best friend in a spinning world. Plant Physiol 13:732–738
Article
CAS
Google Scholar
Eriksson M, Moritz T (1997) Isolation of a cDNA encoding a phytochrome A (Accession No. AJ001318) from Populus tremula × tremuloides. Plant Gene Register # PGR97-186. Plant Physiol 115:1731
Google Scholar
Eriksson ME, Moritz T (2002) Daylength and spatial expression of a gibberellin 20-oxidase isolated from hybrid aspen (Populus tremula L. × P. tremuloides Michx.). Planta 214:920–930
Article
CAS
PubMed
Google Scholar
Eriksson ME, Israelsson M, Olsson O, Moritz T (2000) Increased gibberellin biosynthesis in transgenic trees promotes growth, biomass production and xylem fiber length. Nat Biotechnol 18:784–788
Article
CAS
PubMed
Google Scholar
Flint HL, Boyce BR, Beattie DJ (1967) Index of injury—a useful expression of freezing injury to plant tissues as determined by electrolytic method. Can J Plant Sci 47:229–230
Article
Google Scholar
Harmer SL, Hogenesch JB, Straume M, Chang H-S, Han B, Zhu T, Wang X, Kreps JA, Kay SA (2000) Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290:2110–2113
Article
CAS
PubMed
Google Scholar
Howe GT, Bucciagalia PA, Hackett WP, Furnier GR, Cordonnier-Pratt M-M, Gardner G (1998) Evidence that the phytochrome gene family in black cottonwood has one PHYA locus and two PHYB loci but lacks members of the PHYC/F and PHYE family. Mol Biol Evol 15:160–175
CAS
PubMed
Google Scholar
Imaizumi T, Tran HG, Swartz T, Briggs WR, Kay SA (2003) FKF1 is essential for photoperiodic-specific light signaling in Arabidopsis. Nature 426:302–306
Article
CAS
PubMed
Google Scholar
Imaizumi T, Schultz TF, Harmon FG, Ho LA, Kay SA (2005) FKF1 F-BOX protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis. Science 309:293–297
Article
CAS
PubMed
Google Scholar
Johnson E, Bradley M, Harberd NP, Whitelam GC (1994) Photoresponses of light-grown phyA mutants of Arabidopsis—phytochrome A is required for the perception of daylength extensions. Plant Physiol 105:141–149
Article
CAS
PubMed
Google Scholar
Koncz C, Schell J (1986) The promoter of T
L
-DNA gene 5 controls the tissue-specific expression of chimaeric genes carried by a novel type of binary vector. Mol Gen Genet 204:383–396
Article
CAS
Google Scholar
Kreps JA, Simon AE (1997) Environmental and genetic effects on circadian clock-regulated gene expression in Arabidopsis. Plant Cell 9:297–304
Article
CAS
PubMed
Google Scholar
Lin C, Ahmad M, Cashmore AR (1996) Arabidopsis cryptochrome 1 is a soluble protein mediating blue light-dependent regulation of plant growth and development. Plant J 10:893–902
Article
CAS
PubMed
Google Scholar
Lin C, Yang H, Guo H, Mockler T, Chen J, Cashmore AR (1998) Enhancement of blue-light sensitivity of Arabidopsis seedlings by a blue light receptor cryptochrome 2. Proc Natl Acad Sci USA 95:2686–2690
Article
CAS
PubMed
Google Scholar
Locke JC, Millar AJ, Turner MS (2005) Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana. J Theor Biol 234:383–393
Article
CAS
PubMed
Google Scholar
McWatters HG, Bastow RM, Hall A, Millar AJ (2000) The ELF3 zeitnehmer regulates light signalling to the circadian clock. Nature 408:716–720
Article
CAS
PubMed
Google Scholar
Millar AJ, Carré IA, Strayer CA, Chua N-H, Kay SA (1995) Circadian clock mutants in Arabidopsis identified by luciferase imaging. Science 267:1161–1163
Article
CAS
PubMed
Google Scholar
Møhlmann JA, Asante DKA, Jensen JB, Krane MN, Ernstsen A, Junttila O, Olsen JE (2005) Low night temperature and inhibition of gibberellin biosynthesis override phytochrome action and induce bud set and cold acclimation, but not dormancy in PHYA overexpressors and wild-type of hybrid aspen. Plant Cell Environ 28:1579–1588
Article
Google Scholar
Olsen JE, Junttila O (2002) Far red end-of-day treatment restores wild type-like plant length in hybrid aspen overexpressing phytochrome A. Physiol Plant 115:448–457
Article
CAS
PubMed
Google Scholar
Olsen JE, Junttila O, Moritz T (1995) A localised decrease of GA1 in shoot tips of Salix pentandra seedlings preceds cessation of shoot elongation under short photoperiod. Physiol Plant 95:627–632
Article
CAS
Google Scholar
Olsen JE, Junttila O, Nilsen J, Eriksson ME, Martinussen I, Olsson O, Sandberg G, Moritz T (1997) Ectopic expression of oat phytochrome A in hybrid aspen changes critical day length for growth and prevents cold acclimation. Plant J 12:1339–1350
Article
CAS
Google Scholar
Perales M, Más P (2007) A functional link between rhythmic changes in chromatin structure and the Arabidopsis biological clock. Plant Cell 19:2111–2123
Article
CAS
PubMed
Google Scholar
Plautz JD, Straume M, Stanewsky R, Jamison CF, Brandes C, Dowse HB, Hall JC, Kay SA (1997) Quantitative analysis of Drosophila period gene transcription in living animals. J Biol Rhythms 12:204–217
Article
CAS
PubMed
Google Scholar
Putterill J, Robson F, Lee K, Simon R, Coupland G (1995) The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to Zinc-finger transcription factors. Cell 80:847–857
Article
CAS
PubMed
Google Scholar
Ramírez-Carvajal GA, Morse AM, Davis JM (2008) Transcript profiles of the cytokinin response regulator gene family in Populus imply diverse roles in plant development. New Phytol 177:77–89
PubMed
Google Scholar
Ramos A, Pérez-Solís E, Ibáñez C, Casado R, Collada C, Gómez L, Aragoncillo C, Allona I (2005) Winter disruption of the circadian clock in chestnut. Proc Natl Acad Sci USA 102:7037–7042
Article
CAS
PubMed
Google Scholar
Roden LC, Song H-R, Jackson S, Morris K, Carre IA (2002) Floral responses to photoperiod are correlated with the timing of rhythmic expression relative to dawn and dusk in Arabidopsis. Proc Natl Acad Sci USA 99:13313–13318
Article
CAS
PubMed
Google Scholar
Rohde A, Bhalerao RP (2007) Plant dormancy in the perennial context. Trends Plant Sci 12:217–223
Article
CAS
PubMed
Google Scholar
Ruonala R, Rinne PLH, Kangasjärvi J, Schoot C (2008) CENL1 expression in the rib meristem affects stem elongation and the transition to dormancy in Populus. Plant Cell 20:59–74
Article
CAS
PubMed
Google Scholar
Ruttink T, Arend M, Morreel K, Storme V, Rombauts S, Fromm J, Bhalerao RP, Boerjan W, Rohde A (2007) A molecular timetable for apical bud formation and dormancy induction in poplar. Plant Cell 19:2370–2390
Article
CAS
PubMed
Google Scholar
Salazar JD, Saithong T, Brown PE, Foreman J, Locke JCW, Halliday KJ, Carré IA, Rand DA, Millar AJ (2009) Prediction of photoperiodic regulators from quantitative gene circuit models. Cell 139:1170–1179
Article
CAS
PubMed
Google Scholar
Salome PA, McClung CR (2005) What makes the Arabidopsis clock tick on time? A review on entrainment. Plant Cell Environ 28:21–38
Article
CAS
Google Scholar
Samach A, Onouchi H, Gold SE, Ditta GS, Schwarz-Sommer Z, Yanofsky MF, Coupland G (2000) Distinct roles of CONSTANS target genes in reproductive development of Arabidopsis. Science 288:1613–1616
Article
CAS
PubMed
Google Scholar
Sawa M, Nusinow DA, Kay SA, Imaizumi T (2007) FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis. Science 318:261–265
Article
CAS
PubMed
Google Scholar
Schaffer R, Ramsay N, Samach A, Corden S, Putterill J, Carre IA, Coupland G (1998) The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering. Cell 93:1219–1229
Article
CAS
PubMed
Google Scholar
Somers DE, Devlin PF, Kay SA (1998) Phytochromes and cryptochromes in the entrainment of the Arabidopsis circadian clock. Science 282:1482–1490
Article
Google Scholar
Strayer C, Oyama T, Schultz TF, Raman R, Somers DE, Más P, Panda S, Kreps JA, Kay SA (2000) Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science 289:768–771
Article
CAS
PubMed
Google Scholar
Suárez-López P, Wheatley K, Robson F, Onouchi H, Valverde F, Coupland G (2001) CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis. Nature 410:1116–1120
Article
PubMed
Google Scholar
Swarup K, Alonso-Blanco C, Lynn JR, Michaels SD, Amasino RM, Koorneef M, Millar AJ (1999) Natural allelic variation identifies new genes in the Arabidobsis circadian system. Plant J 20:67–77
Article
CAS
PubMed
Google Scholar
Takata N, Saito S, Saito CT, Nanjo T, Shinohara K, Uemura M (2009) Molecular phylogeny and expression of poplar circadian clock genes, LHY1 and LHY2. New Phytol 181:808–819
Article
CAS
Google Scholar
Tepperman JM, Zhu T, Chang HS, Wang X, Quail PH (2001) Multiple transcription-factor genes are early targets of phytochrome A signaling. Proc Natl Acad Sci USA 98:9437–9442
Article
CAS
PubMed
Google Scholar
Thomas B, Vince-Prue D (1997) Photoperiodism in plants, 2nd edn. Academic Press, London
Google Scholar
Valverde F, Mouradov A, Soppe W, Ravenscroft D, Samach A, Coupland G (2004) Photoreceptor regulation of CONSTANS protein in photoperiodic flowering. Science 303:1003–1006
Article
CAS
PubMed
Google Scholar
Wang ZY, Tobin EM (1998) Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression. Cell 93:1207–1217
Article
CAS
PubMed
Google Scholar
Wareing PF (1956) Photoperiodism in woody plants. Annu Rev Plant Physiol Plant Mol Biol 7:191–214
CAS
Google Scholar
Welling A, Moritz T, Palva ET, Junttila O (2002) Independent activation of cold acclimation by low temperature and short photoperiod in hybrid aspen. Plant Physiol 129:1633–1641
Article
CAS
PubMed
Google Scholar
Yanovsky MJ, Kay SA (2002) Molecular basis of seasonal time measurement in Arabidopsis. Nature 419:308–312
Article
CAS
PubMed
Google Scholar