Abstract
Obg is a ribosome-associated GTPase essential for bacterial viability and is conserved in most organisms, from bacteria to eukaryotes. Obg is also expressed in plants, which predicts an important role for this molecule in plant viability; however, the functions of the plant Obg homologs have not been reported. Here, we first identified Arabidopsis AtObgC as a plant chloroplast-targeting Obg and elucidated its molecular biological and physiological properties. AtObgC encodes a plant-specific Obg GTPase that contains an N-terminal region for chloroplast targeting and has intrinsic GTP hydrolysis activity. A targeting assay using a few AtObgC N-terminal truncation mutants revealed that AtObgC localizes to chloroplasts and its transit peptide consists of more than 50 amino acid residues. Interestingly, GFP-fused full-length AtObgC exhibited a punctate staining pattern in chloroplasts of Arabidopsis protoplasts, which suggests a dimerization or multimerization of AtObgC. Moreover, its Obg fold was indispensable for the generation of the punctate staining pattern, and thus, was supposed to be important for such oligomerization of AtObgC by mediating the protein–protein interaction. In addition, the T-DNA insertion AtObgC null mutant exhibited an embryonic lethal phenotype that disturbed the early stage of embryogenesis. Altogether, our results provide a significant implication that AtObgC as a chloroplast targeting GTPase plays an important role at the early embryogenesis by exerting its function in chloroplast protein synthesis.
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Abbreviations
- G domain:
-
GTPase domain
- GFP:
-
Green fluorescent protein
- OCT:
-
Obg C-terminal region
- PPR:
-
Pentatrico-peptide repeat
- RFP:
-
Red fluorescent protein
References
Bang WY, Kim SW, Ueda A, Vikram M, Yun DJ, Bressan RA, Hasegawa PM, Bahk JD, Koiwa H (2006) Arabidopsis carboxyl-terminal domain phosphatase-like isoforms share common catalytic and interaction domains but have distinct in planta functions. Plant Physiol 142:586–594
Bang WY, Jeong IS, Kim DW, Im CH, Ji C, Hwang SM, Kim SW, Son YS, Jeong J, Shiina T, Bahk JD (2008) Role of Arabidopsis CHL27 protein for photosynthesis, chloroplast development and gene expression profiling. Plant Cell Physiol 49:1350–1363
Bar-Sagi D, Hall A (2000) Ras and Rho GTPases a family reunion. Cell 103:227–238
Berg M, Rogers R, Muralla R, Meinke D (2005) Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis. Plant J 44:866–878
Bourne HR, Sanders DA, McCormick F (1990) The GTPase superfamily: a conserved switch for diverse cell functions. Nature 348:125–132
Bourne HR, Sanders DA, McCormick F (1991) The GTPase superfamily: conserved structure and molecular mechanism. Nature 349:117–127
Brown ED (2005) Conserved P-loop GTPases of unknown function in bacteria: an emerging and vital ensemble in bacterial physiology. Biochem Cell Biol 83:738–746
Buglino J, Shen V, Hakimian P, Lima CD (2002) Structural and biochemical analysis of the Obg GTP binding protein. Structure 10:1581–1592
Cabrera-Vera TM, Vanhauwe J, Thomas TO, Medkova M, Preininger A, Mazzoni MR, Hamm HE (2003) Insights into G protein structure, function, and regulation. Endocrine Rev 24:765–781
Caldon CE, March PE (2003) Function of the universally conserved bacterial GTPases. Curr Opin Microbiol 6:135–139
Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16:735–743
Comartin DJ, Brown ED (2006) Non-ribosomal factors in ribosome subunit assembly are emerging targets for new antibacterial drugs. Curr Opin Pharmacol 6:453–458
Czyz A, Wegrzyn G (2005) The obg subfamily of bacterial GTP-binding proteins: essential proteins of largely unknown functions that are evolutionarily conserved from bacteriato humans. Acta Biochim Pol 52:35–43
Datta K, Skidmore JM, Pu K, Maddock JR (2004) The Caulobacter crescentus GTPase CgtAC is required for progression through the cell cycle and for maintaining 50S ribosomal subunit levels. Mol Microbiol 54:1379–1392
Foti JJ, Schienda J, Sutera VA, Lovett ST (2005) A bacterial G protein-mediated response to replication arrest. Mol Cell 17:549–560
Heo JB, Rho HS, Kim SW, Hwang SM, Kwon HJ, Nahm MY, Bang WY, Bahk JD (2005) OsGAP1 functions as a positive regulator of OsRab11-mediated TGN to PM or vacuole trafficking. Plant Cell Physiol 46:2005–2018
Hirano Y, Ohniwa RL, Wada C, Yoshimura SH, Takeyasu K (2006) Human small G proteins, ObgH1, and ObgH2, participate in the maintenance of mitochondria and nucleolar architectures. Genes Cells 11:1295–1304
Jiang M, Datta K, Walker A, Strahler J, Bagamasbad P, Andrews PC, Maddock JR (2006) The Escherichia coli GTPase CgtAE is involved in late steps of large ribosome assembly. J Bacteriol 188:6757–6770
Kukimoto-Niino M, Murayama K, Inoue M, Terada T, Tame JRH, Kuramitsu S, Shirouzu M, Yokoyama S (2004) Crystal structure of the GTP-binding protein Obg from Thermus thermophilus HB8. J Mol Biol 337:761–770
Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150–163
Lee SM, Hoang MH, Han HJ, Kim HS, Lee K, Kim KE, Kim DH, Lee SY, Chung WS (2009) Pathogen inducible voltage-dependent anion channel (AtVDAC) isoforms are localized to mitochondria membrane in Arabidopsis. Mol Cells 27:321–327
Leipe DD, Wolf YI, Koonin EV, Aravind L (2002) Classification and evolution of P-loop GTPases and related ATPases. J Mol Biol 317:41–72
Lin B, Covalle KL, Maddock JR (1999) The Caulobacter crescentus CgtA protein displays unusual guanine nucleotide binding and exchange properties. J Bacteriol 181:5825–5832
Lin B, Thayer DA, Maddock JR (2004) The Caulobacter crescentus CgtAC Protein cosediments with the free 50S ribosomal subunit. J Bacteriol 186:481–489
Liu C, Meinke DW (1998) The titan mutants of Arabidopsis are disrupted in mitosis and cell cycle control during seed development. Plant J 16:21–31
Maddock J, Bhatt A, Koch M, Skidmore J (1997) Identification of an essential Caulobacter crescentus gene encoding a member of the Obg family of GTP-binding proteins. J Bacteriol 179:6426–6431
Michel B (2005) Obg/CtgA, a signaling protein that controls replication, translation, and morphological development? Dev Cell 8:300–301
Okamoto S, Ochi K (1998) An essential GTP-binding protein functions as a regulator for differentiation in Streptomyces coelicolor. Mol Microbiol 30:107–119
Polakis P, McCormick F (1993) Structural requirements for the interaction of p21ras with GAP, exchange factors, and its biological effector target. J Biol Chem 268:9157–9160
Price RA, Palmer JD, Al-Shehbaz IA, Meyerowitz EM, Somerville CR (1994) Arabidopsis. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
Rogalski M, Ruf S, Bock R (2006) Tobacco plastid ribosomal protein S18 is essential for cell survival. Nucleic Acids Res 34:4537–4545
Rosso MG, Li Y, Strizhov N, Reiss B, Dekker K, Weisshaar B (2003) An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Mol Biol 53:247–259
Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
Sato A, Kobayashi G, Hayashi H, Yoshida H, Wada A, Maeda M, Hiraga S, Takeyasu K, Wada C (2005) The GTP binding protein Obg homolog ObgE is involved in ribosome maturation. Genes Cells 10:393–408
Schmitz-Linneweber C, Small I (2008) Pentatricopeptide repeat proteins: a socket set for organelle gene expression. Trends Plant Sci 13:663–670
Scott JM, Ju J, Mitchell T, Haldenwang WG (2000) The Bacillus subtilis GTP binding protein Obg and regulators of the σB stress response transcription factor cofractionate with ribosomes. J Bacteriol 182:2771–2777
Seo HS, Choi CH, Lee SY, Cho MJ, Bahk JD (1997) Biochemical characteristics of a rice (Oryza sativa L., IR36) G-protein a-subunit expressed in Escherichia coli. Biochem J 324:273–281
Shepherd PR, Salvesen G, Toker A, Graham SV, Roberts S, Buckley N, Finkel SE, Horowitz JM, Meisterernst M, Morgan I (2002) Impaired chromosome partitioning and synchronization of DNA replication initiation in an insertional mutant in the Vibrio harveyi cgtA gene coding for a common GTP-binding protein. Biochem J 362:579–584
Sikora AE, Zielke R, Datta K, Maddock JR (2006) The Vibrio harveyi GTPase CgtAV is essential and is associated with the 50S ribosomal subunit. J Bacteriol 188:1205–1210
Sprang SR (1997) G protein mechanisms: insights from structural analysis. Annu Rev Biochem 66:639–678
Tan J, Jakob U, Bardwell JCA (2002) Overexpression of two different GTPases rescues a null mutation in a heat-induced rRNA methyltransferase. J Bacteriol 184:2692–2698
Trach K, Hoch JA (1989) The Bacillus subtilis spo0B stage 0 sporulation operon encodes an essential GTP-binding protein. J Bacteriol 171:1362–1371
Wout P, Pu K, Sullivan SM, Reese V, Zhou S, Lin B, Maddock JR (2004) The Escherichia coli GTPase CgtAE cofractionates with the 50S ribosomal subunit and interacts with SpoT, a ppGpp synthetase/hydrolase. J Bacteriol 186:5249–5257
Yamada K, Lim J, Dale JM, Chen H, Shinn P, Palm CJ, Southwick AM, Wu HC, Kim C, Nguyen M (2003) Empirical analysis of transcriptional activity in the Arabidopsis genome. Science 302:842–846
Acknowledgments
We thank Prof. Hisashi Koiwa at the Texas A&M University for the kind gift of the pENSOTG vector and Prof. Woo Sik Chung and Dr. Sang Min Lee at the Gyeongsang National University in Korea for providing the F 1 -ATPase-RFP clone as a mitochondrial marker. J. Chen, I·S. Jeong, D.W. Kim, C·H. Im, and Y. Lee are graduate students supported by scholarships from the BK21 program at the Gyeongsang National University in Korea. This work was supported by grants from the BK21 program and the EB-NCRC (#R15-2003-012-01002-0) of the Ministry of Education and Science Technology of Korea, and by the New Energy and Industrial Technology Development Organization (the Green Biotechnology Program) and Grants-in-Aid from the Ministry of Education, Culture, Sports, Science and Technology (Nos. 18570048 and 19039030 to T.S.) of Japan.
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Woo Young Bang, Akira Hata and In Sil Jeong contributed equally to this work.
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Bang, W.Y., Hata, A., Jeong, I.S. et al. AtObgC, a plant ortholog of bacterial Obg, is a chloroplast-targeting GTPase essential for early embryogenesis. Plant Mol Biol 71, 379 (2009). https://doi.org/10.1007/s11103-009-9529-3
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DOI: https://doi.org/10.1007/s11103-009-9529-3