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Functional characterization of the Arabidopsis thaliana nitrate transporter CHL1 in the yeast Hansenula polymorpha

Abstract

CHL1 (AtNRT1.1) is a dual-affinity nitrate transporter of Arabidopsis thaliana, in which phosphorylation at Thr 101 switches CHL1 from low to high nitrate affinity. CHL1 expressed in a Hansenula polymorpha high-affinity nitrate-transporter deficient mutant (Δynt1) restores nitrate uptake and growth. These events take place at nitrate concentrations as low as 500 μM, suggesting that CHL1 has a high-affinity for nitrate in yeast. Accordingly, CHL1 expressed in H. polymorpha presents a K m for nitrate of about 125 μM. The absence of nitrate, the CHL1 gene inducer, showed the high turnover rate of CHL1 expressed in yeast, which is counteracted by nitrate CHL1 induction. Furthermore, H. polymorpha strains expressing CHL1 become sensitive to 250 μM chlorate, as expected for CHL1 high-affinity behaviour. Given that CHL1 presented high affinity by nitrate, we study the role of CHL1 Thr101 in yeast. Strains producing CHL1Thr101Ala, unable to undergo phosphorylation, and CHL1Thr101Asp, where CHL1 phosphorylation is constitutively mimicked, were used. Yeast strains expressing CHL1Thr101Ala, CHL1Thr101Asp and CHL1 at the same rate showed that Δynt1CHL1Thr101Ala is strikingly unable to transport nitrate and contains a very low amount of CHL1 protein; however, Δynt1CHL1Thr101Asp restores nitrate uptake and growth, although no significant changes in nitrate affinity were observed. Our results show that CHL1-Thr101 is involved in regulating the levels of CHL1 expressed in yeast and suggest that the phosphorylation of this residue could be involved in targeting this nitrate transporter to the plasma membrane. The functional expression of CHL1 in H. polymorpha reveals that this yeast is a suitable tool for evaluating the real nitrate transport capacity of plant putative nitrate transporters belonging to different families and study their regulation and structure function relationship.

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References

  • Aberg B (1947) On the mechanism of the toxic action of chlorates and some related substances upon young wheat plants. Kungl Lantbrukshögskolans Ann 15:37–107

    Google Scholar 

  • Alboresi A, Gestin C, Leydecker MT, Bedu M, Meyer C, Truong HN (2005) Nitrate, a signal relieving seed dormancy in Arabidopsis. Plant Cell Environ 28:500–512

    PubMed  Article  CAS  Google Scholar 

  • Blondel MO, Morvan J, Dupre S, Urban-Grimal D, Haguenauer-Tsapis R, Volland C (2004) Direct sorting of the yeast uracil permease to the endosomal system is controlled by uracil binding and Rsp5p-dependent ubiquitylation. Mol Biol Cell 15:883–895

    PubMed  Article  CAS  Google Scholar 

  • Braaksma FJ, Feenstra WJ (1982) Isolation and characterization of nitrate reductase-deficient mutants of Arabidopsis thaliana. Theor Appl Genet 64:83–90

    Article  CAS  Google Scholar 

  • Brito N, Perez MD, Perdomo G, González C, Garcia-Lugo P, Siverio JM (1999) A set of Hansenula polymorpha integrative vectors to construct lacz fusions. Appl Microbiol Biotechnol 53:23–29 (ref type: Generic)

    Article  CAS  Google Scholar 

  • Doddema HENK, Otten H (1979) Uptake of nitrate by mutants of Arabidopsis thaliana, disturbed in uptake or reduction of nitrate. III. Regulation. Physiol Plant 45:339–346

    Article  CAS  Google Scholar 

  • Doddema HENK, Telkamp GP (1979) Uptake of nitrate by mutants of Arabidopsis thaliana, disturbed in uptake or reduction of nitrate. II. Kinetics. Physiol Plant 45:332–338

    Article  CAS  Google Scholar 

  • Doddema HENK, Hofstra JJ, Feenstra WJ (1978) Uptake of nitrate by mutants of Arabidopsis thaliana, disturbed in uptake or reduction of nitrate. I. Effect of nitrogen source during growth on uptake of nitrate and chlorate. Physiol Plant 43:343–350

    Article  CAS  Google Scholar 

  • Forde B (2000) Nitrate transporters in plants: structure, function and regulation. Bichim Biophys Acta 1465:219–235

    Article  CAS  Google Scholar 

  • Galvan A, Fernández E (2001) Eukaryotic nitrate and nitrite transporters. Cell Mol Life Sci 58:225–233

    PubMed  Article  CAS  Google Scholar 

  • Guo FQ, Wang R, Chen M, Crawford NM (2001) The Arabidopsis dual-affinity nitrate transporter gene AtNRT1.1 (CHL1) is activated and functions in nascent organ development during vegetative and reproductive growth. Plant Cell 13:1761–1777

    PubMed  Article  CAS  Google Scholar 

  • Guo FQ, Young J, Crawford NM (2003) The nitrate transporter AtNRT1.1 (CHL1) functions in stomatal opening and contributes to drought susceptibility in Arabidopsis. Plant Cell 15:107–117

    PubMed  Article  CAS  Google Scholar 

  • Horak J (2003) The role of ubiquitin in down-regulation and intracellular sorting of membrane proteins: insights from yeast. Biochim Biophys Acta 1614:139–155

    PubMed  Article  CAS  Google Scholar 

  • Huang NC, Chiang CS, Crawford NM, Tsay YF (1996) CHL1 encodes a component of the low-affinity nitrate uptake system in Arabidopsis and shows cell type-specific expression in roots. Plant Cell 8:2183–2191

    PubMed  Article  CAS  Google Scholar 

  • Krouk G, Tillard P, Gojon A (2006) Regulation of the high-affinity NO3-uptake system by NRT1.1-mediated NO3-demand signaling in Arabidopsis. Plant Physiol 142:1075–1086

    PubMed  Article  CAS  Google Scholar 

  • Leao-Helder AN, Krikken AM, van der Klei IJ, Kiel JAKW, Veenhuis M (2003) Transcriptional down-regulation of peroxisome numbers affects selective peroxisome degradation in Hansenula polymorpha. J Biol Chem 278:40749–40756

    PubMed  Article  CAS  Google Scholar 

  • Liu KH, Tsay YF (2003) Switching between the two action modes of the dual-affinity nitrate transporter CHL1 by phosphorylation. EMBO J 22:1005–1013

    PubMed  Article  CAS  Google Scholar 

  • Liu KH, Huang CY, Tsay YF (1999) CHL1 is a dual-affinity nitrate transporter of Arabidopsis involved in multiple phases of nitrate uptake. Plant Cell 11:865–874

    PubMed  Article  CAS  Google Scholar 

  • Machin F, Medina B, Navarro FJ, Perez MD, Veenhuis M, Tejera P, Lorenzo H, Lancha A, Siverio JM (2004) The role of Ynt1 in nitrate and nitrite transport in the yeast Hansenula polymorpha. Yeast 21:265–276

    PubMed  Article  CAS  Google Scholar 

  • Montanini B, Viscomi AR, Bolchi A, Martin Y, Siverio JM, Balestrini R, Bonfante P, Ottonello S (2006) Functional properties and differential mode of regulation of the nitrate transporter from a plant symbiotic ascomycete. Biochem J 394:125–134

    PubMed  Article  CAS  Google Scholar 

  • Munos S, Cazettes C, Fizames C, Gaymard F, Tillard P, Lepetit M, Lejay L, Gojon A (2004) Transcript profiling in the chl1-5 mutant of Arabidopsis reveals a role of the nitrate transporter NRT1.1 in the regulation of another nitrate transporter, NRT2.1. Plant Cell 16:2433–2447

    PubMed  Article  CAS  Google Scholar 

  • Navarro FJ, Machin F, Martin Y, Siverio JM (2006) Down-regulation of eukaryotic nitrate transporter by nitrogen-dependent ubiquitinylation. J Biol Chem 281:13268–13274

    PubMed  Article  CAS  Google Scholar 

  • Oostindiër-Braaksma F, Feenstra W (1973) Isolation and characterization of chlorate resistant mutants of Arabidopsis thaliana. Mutat Res 19:175–185

    Google Scholar 

  • Orsel M, Chopin F, Leleu O, Smith SJ, Krapp A, Niel-Vedele F, Miller AJ (2006) Characterization of a two-component high-affinity nitrate uptake system in Arabidopsis. Physiology and protein-protein interaction. Plant Physiol 142:1304–1317

    PubMed  Article  CAS  Google Scholar 

  • Paulsen IT, Skurray RA (1994) The POT family of transport proteins. Trends Biochem Sci 19:404

    PubMed  Article  CAS  Google Scholar 

  • Perdomo G, Navarro F, Medina B, Machín F, Tejera P, Siverio J (2002) Tobacco Nia2 cDNA functionally complements a Hansenula polymorpha yeast mutant lacking nitrate reductase. A new expression system for the study of plant protein involved in nitrate assimilation. Plant Mol Biol 50:405–413

    PubMed  Article  CAS  Google Scholar 

  • Pérez MD, González C, Ávila J, Brito N, Siverio JM (1997) The YNT1 gene encoding the nitrate transporter in the yeast Hansenula polymorpha is clustered with genes YNI1 and YNR1 encoding nitrite reductase, and its disruption causes inability to grow in nitrate. Biochem J 321:397–403

    PubMed  Google Scholar 

  • Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29:e45

    PubMed  Article  CAS  Google Scholar 

  • Remans T, Nacry P, Pervent M, Filleur S, Diatloff E, Mounier E, Tillard P, Forde BG, Gojon A (2006) The Arabidopsis NRT1.1 transporter participates in the signaling pathway triggering root colonization of nitrate-rich patches. PNAS 103:19206–19211

    PubMed  Article  CAS  Google Scholar 

  • Siverio JM (2002) Assimilation of nitrate by yeast. FEMS Microbiol Rev 749:277–284

    Article  Google Scholar 

  • Snell FD, Snell CT (1948) Colorimetric methods of analysis. Van Nostrand, New York

    Google Scholar 

  • Soetens O, De Craene JO, Andre B (2001) Ubiquitin is required for sorting to the vacuole of the yeast general amino acid permease, Gap1. J Biol Chem 276:43949–43957

    PubMed  Article  CAS  Google Scholar 

  • Steiner HY, Naider F, Becker JM (1995) The PTR family: a new group of peptide transporters. Mol Microbiol 16:825–834

    PubMed  Article  CAS  Google Scholar 

  • Tong Y, Zhou JJ, Li Z, Miller AJ (2005) A two-component high-affinity nitrate uptake system in barley. Plant J 41:442–450

    PubMed  CAS  Article  Google Scholar 

  • Tsay YF, Schroeder JI, Feldmann KA, Crawford NM (1993) The herbicide sensitivity gene CHL1 of Arabidopsis encodes a nitrate-inducible nitrate transporter. Cell 72:705–713

    PubMed  Article  CAS  Google Scholar 

  • Wang R, Liu D, Crawford NM (1998) The Arabidopsis CHL1 protein plays a major role in high-affinity nitrate uptake. Proc Natl Acad Sci USA 95:15134–15139

    PubMed  Article  CAS  Google Scholar 

  • Zhou JJ, Theodoulou FL, Muldin I, Ingemarsson B, Miller AJ (1998) Cloning and functional characterization of a Brassica napus transporter that is able to transport nitrate and histidine. J Biol Chem 273:12017–12023

    PubMed  Article  CAS  Google Scholar 

  • Zhou JJ, Fernandez E, Galvan A, Miller AJ (2000) A high affinity nitrate transport system from Chlamydomonas requires two gene products. FEBS Lett 466:225–227

    PubMed  Article  CAS  Google Scholar 

Download references

Acknowledgements

The authors thank Yin-Fang Tsay for CHL1 cDNA, site-point mutation constructs, anti-CHL1 antiserum, and critical reading of the manuscript. This work was supported by Grants BFU2004-01012 and BFU2007-60172/BMC to José M. Siverio from the Ministerio de Educación y Ciencia (MEC) Spain. Yusé Martín and Francisco J. Navarro were recipients of doctoral fellowships from the MEC. We thank Guido Jones for English revision of the manuscript and A. Lancha for her suggestions. The group is member of the Network for Cooperative Research on Membrane Transport Proteins (REIT), co-funded by the Ministerio de Educación y Ciencia, Spain and the European Regional Development Fund (ERDF, Grant BFU2005-24983-E/BFI).

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Correspondence to José M. Siverio.

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Martín, Y., Navarro, F.J. & Siverio, J.M. Functional characterization of the Arabidopsis thaliana nitrate transporter CHL1 in the yeast Hansenula polymorpha . Plant Mol Biol 68, 215 (2008). https://doi.org/10.1007/s11103-008-9363-z

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  • DOI: https://doi.org/10.1007/s11103-008-9363-z

Keywords

  • Nitrate transport
  • CHL1 (AtNRT1.1)
  • Arabidopsis thaliana
  • Yeast
  • Hansenula polymorpha
  • Ynt1