Abstract
Rad51 paralogs belong to the Rad52 epistasis group of proteins and are involved in homologous recombination (HR), especially the assembly and stabilization of Rad51, which is a homolog of RecA in eukaryotes. We previously cloned and characterized two RAD51 paralogous genes in Arabidopsis, named AtRAD51C and AtXRCC3, which are considered the counterparts of human RAD51C and XRCC3, respectively. Here we describe the identification of RAD51B homologue in Arabidopsis, AtRAD51B. We found a higher expression of AtRAD51B in flower buds and roots. Expression of AtRAD51B was induced by genotoxic stresses such as ionizing irradiation and treatment with a cross-linking reagent, cisplatin. Yeast two-hybrid analysis showed that AtRad51B interacted with AtRad51C. We also found and characterized T-DNA insertion mutant lines. The mutant lines were devoid of AtRAD51B expression, viable and fertile. The mutants were moderately sensitive to γ-ray and hypersensitive to cisplatin. Our results suggest that AtRAD51B gene product is involved in the repair of double-strand DNA breaks (DSBs) via HR
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Abbreviations
- RACE:
-
rapid amplification of cDNA ends
- RT-PCR:
-
reverse transcriptase polymerase chain reaction
- X-gal:
-
5-bromo-4-chloro-3-indolyl-β-D-galactopyranoside
References
J.S. Albala M.P. Thelen C. Prange W. Fan M. Christensen L.H. Thompson G.G. Lennon (1997) ArticleTitleIdentification of a novel human RAD51 homolog RAD51B Genomics 46 476–479 Occurrence Handle10.1006/geno.1997.5062 Occurrence Handle1:CAS:528:DyaK1cXmt12ntw%3D%3D Occurrence Handle9441753
D.K. Bishop D. Park L. Xu N. Kleckner (1992) ArticleTitleDMC1: A meiosis-specific yeast homolog of E. coli recA required for recombination synaptonemal complex formation and cell cycle progression Cell 69 439–456 Occurrence Handle10.1016/0092-8674(92)90446-J Occurrence Handle1:CAS:528:DyaK3sXkt1Wltr0%3D Occurrence Handle1581960
D.K. Bishop U. Ear A. Bhattacharyya C. Calderone M. Beckett R.R. Weichselbaum A. Shinohara (1998) ArticleTitleXrcc3 is required for assembly of Rad51 complexes in vivo J. Biol. Chem. 273 21482–21488 Occurrence Handle10.1074/jbc.273.34.21482 Occurrence Handle1:CAS:528:DyaK1cXlsFOrur0%3D Occurrence Handle9705276
J.-Y. Bleuyard C.I. White (2004) ArticleTitleThe Arabidopsis homologue of Xrcc3 plays an essential role in meiosis EMBO J. 23 439–449 Occurrence Handle10.1038/sj.emboj.7600055 Occurrence Handle1:CAS:528:DC%2BD2cXhtVeqtro%3D Occurrence Handle14726957
J.P. Braybrooke J.L. Li L. Wu F. Caple F.E. Benson I.D. Hickson (2003) ArticleTitleFunctional interaction between the Bloom’s syndrome helicase and the RAD51 paralog RAD51L3 (RAD51D) J. Biol. Chem. 278 48357–48366 Occurrence Handle10.1074/jbc.M308838200 Occurrence Handle1:CAS:528:DC%2BD3sXpt1Gjt7o%3D Occurrence Handle12975363
P. Bundock P. Hooykaas (2002) ArticleTitleSevere developmental defects hypersensitivity to DNA-damaging agents and lengthened telomeres in Arabidopsis MRE11 mutants Plant Cell 14 2451–2462 Occurrence Handle10.1105/tpc.005959 Occurrence Handle1:CAS:528:DC%2BD38XotFelsL4%3D Occurrence Handle12368497
R. Cartwright A.M. Dunn P.J. Simpson C.E. Tambini J. Thacker (1998) ArticleTitleIsolation of novel human and mouse genes of the recA/RAD51 recombination-repair gene family Nucleic Acids Res. 26 1653–1659 Occurrence Handle10.1093/nar/26.7.1653 Occurrence Handle1:CAS:528:DyaK1cXis1Ojtb8%3D Occurrence Handle9512535
R. Cartwright C.E. Tambini P.J. Simpson J. Thacker (1998b) ArticleTitleThe XRCC2 DNA repair gene from human and mouse encodes a novel member of the recA/RAD51 family Nucleic Acids Res. 26 3084–3089 Occurrence Handle10.1093/nar/26.13.3084 Occurrence Handle1:CAS:528:DyaK1cXks1Cls7o%3D
F. Couteau F. Belzile C. Horlow O. Grandjean D. Vezon M.P. Doutriaux (1999) ArticleTitleRandom chromosome segregation without meiotic arrest in both male and female meiocytes of a dmc1 mutant of Arabidopsis Plant Cell 11 1623–1634 Occurrence Handle10.1105/tpc.11.9.1623 Occurrence Handle1:CAS:528:DyaK1MXms1aiu70%3D Occurrence Handle10488231
B. Deans C.S. Griffin M. Maconochie J. Thacker (2000) ArticleTitleXrcc2 is required for genetic stability embryonic neurogenesis and viability in mice EMBO J. 19 6675–6685 Occurrence Handle10.1093/emboj/19.24.6675 Occurrence Handle1:CAS:528:DC%2BD3MXns1agtQ%3D%3D Occurrence Handle11118202
M. Dizdaroglu D.S. Bergtold (1986) ArticleTitleCharacterization of free radical-induced base damage in DNA at biologically relevant levels Anal. Biochem. 156 182–188 Occurrence Handle1:CAS:528:DyaL28XkslCitro%3D Occurrence Handle3017148
M.K. Dosanjh D.W. Collins W. Fan G. Lennon J.S. Albana Z. Shen D. Schild (1998) ArticleTitleIsolation and characterization of RAD51C a new human member of the RAD51 family of related genes Nucleic Acids Res. 26 1179–1184 Occurrence Handle1:CAS:528:DyaK1cXhvFarsbg%3D Occurrence Handle9469824
M.-P. Doutriaux F. Couteau C. Bergounioux C. White (1998) ArticleTitleIsolation and characterization of the RAD51 and DMC1 homologs from Arabidopsis thaliana Mol. Gen. Genet. 257 283–291 Occurrence Handle1:CAS:528:DyaK1cXitVOltLg%3D Occurrence Handle9520262
A. Dudas M. Chovanec (2004) ArticleTitleDNA double-strand break repair by homologous recombination Mutat. Res. 566 131–167 Occurrence Handle1:CAS:528:DC%2BD2cXhtFWmurg%3D Occurrence Handle15164978
J. Essers H. Steeg Particlevan J. Wit Particlede S.M. Swagemakers M. Vermeij J.H. Hoeijmakers R. Kanaar (2000) ArticleTitleHomologous and non-homologous recombination differentially affect DNA damage repair in mice EMBO J. 19 1703–1710 Occurrence Handle1:CAS:528:DC%2BD3cXislymtLg%3D Occurrence Handle10747037
M.E. Gallego M. Jeanneau F. Granier D. Bouchez N. Bechtold C.I. White (2001) ArticleTitleDisruption of the Arabidopsis RAD50 gene leads to plant sterility and MMS sensitivity Plant J. 25 31–41 Occurrence Handle1:CAS:528:DC%2BD3MXhsVWrtrk%3D Occurrence Handle11169180
B.C. Godthelp W.W. Wiegant A. Duijn-Goedhart Particlevan O.D. Scharer P.P. Buul Particlevan R. Kanaar M.Z. Zdzienicka (2002) ArticleTitleMammalian Rad51C contributes to DNA cross-link resistance sister chromatid cohesion and genomic stability Nucleic Acids Res. 30 2172–2182 Occurrence Handle1:CAS:528:DC%2BD38XktFyktr8%3D Occurrence Handle12000837
R.C. Gupta L.R. Bazemore E.I. Golub C.M. Radding (1997) ArticleTitleActivities of human recombination protein Rad51 Proc. Natl. Acad. Sci. USA 94 463–468 Occurrence Handle1:CAS:528:DyaK2sXnslagtw%3D%3D Occurrence Handle9012806
J.H.J. Hoeijmakers (2001) ArticleTitleGenome maintenance mechanisms for preventing cancer Nature 411 366–374 Occurrence Handle10.1038/35077232 Occurrence Handle1:CAS:528:DC%2BD3MXktVSjs74%3D Occurrence Handle11357144
L.C. Huang K.C. Clarkin G.M. Wahl (1996) ArticleTitleSensitivity and selectivity of the DNA damage sensor responsible for activating p53-dependent G1 arrest Proc. Natl. Acad. Sci. USA 93 4827–4832 Occurrence Handle1:CAS:528:DyaK28XjtVKlsbo%3D Occurrence Handle8643488
J.A. Kans R.K. Mortimer (1991) ArticleTitleNucleotide sequence of the RAD57 gene of Saccharomyces cerevisiae Gene 105 139–140 Occurrence Handle1:CAS:528:DyaK3sXhvVWmsw%3D%3D Occurrence Handle1937004
V.I. Klimyuk J.D.G. Jones (1997) ArticleTitleAtDMC1 the Arabidopsis homologue of the yeast DMC1 gene: Characterization transposon-induced allelic variation and meiosis-associated expression Plant J. 11 1–14 Occurrence Handle1:CAS:528:DyaK2sXhtFGjs7k%3D Occurrence Handle9025299
A. Kuzminov (2001) ArticleTitleDNA replication meets genetic exchange: chromosomal damage and its repair by homologous recombination Proc. Natl. Acad. Sci. USA 98 8461–8468 Occurrence Handle1:CAS:528:DC%2BD3MXls1WisLw%3D Occurrence Handle11459990
P. Laufs O. Grandjean C. Jonak K. Kieu J. Traas (1998) ArticleTitleCellular parameters of the shoot apical meristem in Arabidopsis Plant Cell 1998 1375–1390
W. Li C. Chen U. Markmann-Mulisch L. Timofejeva E. Schmelzer H. Ma B. Reiss (2004) ArticleTitleThe Arabidopsis AtRAD51 gene is dispensable for vegetative development but required for meiosis Proc. Natl. Acad. Sci. USA 101 10597–10601
Y.C. Lio A.V. Mazin S.C. Kowalczykowski D.J. Chen (2003) ArticleTitleComplex formation by the human Rad51B and Rad51C DNA repair proteins and their activities in vitro J. Biol. Chem. 278 2469–24678 Occurrence Handle1:CAS:528:DC%2BD3sXksFantQ%3D%3D Occurrence Handle12427746
N. Liu J.E. Lamerdin R.S. Tebbs D. Schild J.D. Tucker M.R. Shen K.W. Brookman M.J. Siciliano C.A. Walter W. Fan L.S. Narayana Z.Q. Zhou A.W. Adamson K.J. Sorensen D.J. Chen N.J. Jones L.H. Thompson (1998) ArticleTitleXRCC2 and XRCC3 new human Rad51-family members promote chromosome stability and protect against DNA cross-links and other damages Mol. Cell 1 783–793 Occurrence Handle1:CAS:528:DyaK1cXjslSjt7s%3D Occurrence Handle9660962
N. Liu D. Schild M.P. Thelen L.H. Thompson (2002) ArticleTitleInvolvement of Rad51C in two distinct protein complexes of Rad51 paralogs in human cells Nucleic Acids Res. 30 1009–1015 Occurrence Handle1:CAS:528:DC%2BD38Xhs1Chs74%3D Occurrence Handle11842113
Y. Liu J.-Y. Masson R. Shah P. O’Regan S.C. West (2004) ArticleTitleRAD51C is required for holliday junction processing in mammalian cells Science 303 243–246 Occurrence Handle1:CAS:528:DC%2BD2cXhtlGhtQ%3D%3D Occurrence Handle14716019
S.T. Lovett (1994) ArticleTitleSequence of the RAD55 gene of Saccharomyces cerevisiae: similar to prokaryotic RecA and other RecA-like proteins Gene 142 103–106 Occurrence Handle1:CAS:528:DyaK2cXltVSqs7s%3D Occurrence Handle8181742
J.-Y. Masson A.Z. Stasiak A. Stasiak F. Benson S.C. West (2001) ArticleTitleComplex formation by the human RAD51C and XRCC3 recombination repair proteins Proc. Natl. Acad. Sci. USA 98 8440–8446 Occurrence Handle1:CAS:528:DC%2BD3MXls1Wis7c%3D Occurrence Handle11459987
K.A. Miller D. Sawicka D. Barsky J.S. Albala (2004) ArticleTitleDomain mapping of the Rad51 paralog protein complexes Nucleic Acids Res. 32 169–178 Occurrence Handle1:CAS:528:DC%2BD2cXhtlKgurY%3D Occurrence Handle14704354
T. Ogawa X. Yu A. Shinohara E.H. Egleman (1993) ArticleTitleSimilarity of the yeast RAD51 filament to the bacterial RecA filament Science 259 1896–1899 Occurrence Handle1:CAS:528:DyaK3sXitVyjs7s%3D Occurrence Handle8456314
P. O’Regan C. Wilson S. Townsend J. Thacker (2001) ArticleTitleXRCC2 is a nuclear RAD51-like protein required for damage-dependent RAD51 focus formation without the need for ATP binding J. Biol. Chem. 22 22148–22153
K. Osakabe T. Yoshioka H. Ichikawa S. Toki (2002) ArticleTitleMolecular cloning and characterization of RAD51-like genes from Arabidopsis thaliana Plant Mol. Biol. 50 71–81 Occurrence Handle1:CAS:528:DC%2BD38XkslKltLc%3D Occurrence Handle12139010
R.D.M. Page (1996) ArticleTitleTREEVIEW: an application to display phylogenetic trees on personal computers Comput. Appl. Biosci. 12 357–358 Occurrence Handle1:STN:280:ByiD2MfgtlA%3D Occurrence Handle8902363
D.L. Pittman L.R. Weinberg J.C. Schimenti (1998) ArticleTitleIdentification characterization and genetic mapping of Rad51d a new mouse and human RAD51/RecA-related gene Genomics 49 103–111 Occurrence Handle1:CAS:528:DyaK1cXivFSmt7g%3D Occurrence Handle9570954
D.L. Pittman J.C. Schimenti (2000) ArticleTitleMidgestation lethality in mice deficient for the RecA-related gene Rad51d/Rad51l3 Genesis 26 167–173 Occurrence Handle1:CAS:528:DC%2BD3cXis1yrurs%3D Occurrence Handle10705376
S.B. Preuss A.B. Britt (2003) ArticleTitleA DNA-damage-induced cell cycle checkpoint in Arabidopsis Genetics 164 323–334 Occurrence Handle1:CAS:528:DC%2BD3sXkvFOiuro%3D Occurrence Handle12750343
J. Puizina J. Siroky P. Mokros D. Schweizer K. Riha (2004) ArticleTitleMre11 deficiency in Arabidopsis is associated with chromosomal instability in somatic cells and Spo11-dependent genome fragmentation during meiosis Plant Cell 16 1968–1978 Occurrence Handle1:CAS:528:DC%2BD2cXmvVansb8%3D Occurrence Handle15258261
M.C. Rice S.T. Smith F. Bullrich P. Havre E.B. Kmiec (1997) ArticleTitleIsolation of human and mouse genes based on homology to REC2 a recombinational repair gene from the fungus Ustilago maydis Proc. Natl. Acad. Sci. USA 94 7417–7422 Occurrence Handle1:CAS:528:DyaK2sXksFOmurg%3D Occurrence Handle9207106
C. Richardson M. Jasin (2000) ArticleTitleCoupled homologous and nonhomologous repair of a double-strand break preserves genomic integrity in mammalian cells Mol. Cell. Biol. 20 9068–9075 Occurrence Handle1:CAS:528:DC%2BD3MXitFGrsLs%3D Occurrence Handle11074004
M.S. Sasaki M. Takata E. Sonoda A. Tachibana S. Takeda (2004) ArticleTitleRecombination repair pathway in the maintenance of chromosomal integrity against DNA interstrand crosslinks Cytogenet. Genome Res. 104 28–34 Occurrence Handle1:CAS:528:DC%2BD2cXlvVGks7w%3D Occurrence Handle15162012
D. Schild Y.-C. Lio D.W. Collins T. Tsomondo D.J. Chen (2000) ArticleTitleEvidence for simultaneous protein interactions between human RAD51 paralogs J. Biol. Chem. 275 16443–16449 Occurrence Handle1:CAS:528:DC%2BD3cXjvFCnt7k%3D Occurrence Handle10749867
Z. Shu S. Smith L. Wang M.C. Rice E.B. Kmiec (1999) ArticleTitleDisruption of muREC2/RAD51L1 in mice results in early embryonic lethality which can be partially rescued in a p53−/− background Mol. Cell. Biol. 19 8686–8693 Occurrence Handle1:CAS:528:DyaK1MXns1ynsr0%3D Occurrence Handle10567591
S. Sigurdsson S. Komen Particlevan W. Bussen D. Schild J.S. Albala P. Sung (2001) ArticleTitleMediator function of the human Rad51B-Rad51C complex in Rad51/PRA-catalyzed DNA strand exchange Genes Dev. 15 3308–3318 Occurrence Handle1:CAS:528:DC%2BD38XivFyrsw%3D%3D Occurrence Handle11751636
E. Sonoda M.S. Sasaki J.M. Buerstedde O. Bezzubova A. Shinohara H. Ogawa M. Takata Y. Yamaguchi-Iwai S. Takeda (1998) ArticleTitleRad51-deficient vertebrate cells accumulate chromosome breaks prior to cell death EMBO J. 17 598–608 Occurrence Handle1:CAS:528:DyaK1cXos1ertQ%3D%3D Occurrence Handle9430650
P. Sung (1997) ArticleTitleYeast Rad55 and Rad57 proteins form a heterodimer that functions with replication protein A to promote DNA strand exchange by Rad51 recombinase Genes Dev. 11 1111–1121 Occurrence Handle1:CAS:528:DyaK2sXjtlartbk%3D Occurrence Handle9159392
M. Takata M.S. Sasaki E. Sonoda T. Fukushima C. Morrison J. Albala M.A. Swagemakers R. Kanaar L.H. Thompson S. Takeda (2000) ArticleTitleThe Rad51 paralogs Rad51B promotes homologous recombinational repair Mol. Cell. Biol. 20 6476–6482 Occurrence Handle1:CAS:528:DC%2BD3cXlvFens74%3D Occurrence Handle10938124
M. Takata M.S. Sasaki S. Tachiiri T. Fukushima E. Sonoda D. Schild L.H. Thompson S. Takeda (2001) ArticleTitleChromosome instability and defective recombinational repair in knockout mutants of the five Rad51 paralogs Mol. Cell. Biol. 21 2858–2866 Occurrence Handle1:CAS:528:DC%2BD3MXisVyhtr0%3D Occurrence Handle11283264
R.S. Tebbs Y. Zhao J.D. Tucker J.B. Scheerer M.J. Siciliano M. Hwang N. Liu R.J. Legerski L.H. Thompson (1995) ArticleTitleCorrection of chromosomal instability and sensitivity to diverse mutagens by cDNA of the XRCC3 DNA repair gene Proc. Natl. Acad. Sci. USA 92 6354–6358 Occurrence Handle1:CAS:528:DyaK2MXmslKqtLc%3D Occurrence Handle7603995
J. Thacker (1999a) ArticleTitleA surfeit of RAD51-like genes? Trends Genet. 15 166–168 Occurrence Handle1:CAS:528:DyaK1MXjt12mtbs%3D
J. Thacker (1999b) ArticleTitleRepair of ionizing radiation damage in mammalian cells: Alternative pathways and their fidelity C.A. Acad. Sci. Ser. III Life Sci. 322 103–108 Occurrence Handle1:CAS:528:DyaK1MXlvVOmtbk%3D
J.D. Thompson D.G. Higgins T.J. Gibson (1994) ArticleTitleCLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting positions-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 4673–4680 Occurrence Handle1:CAS:528:DyaK2MXitlSgu74%3D Occurrence Handle7984417
H. Yokoyama H. Kurumizaka S. Ikawa S. Yokoyama T. Shibata (2003) ArticleTitleHolliday junction binding activity of the human Rad51B protein J. Biol. Chem. 278 2767–2772 Occurrence Handle1:CAS:528:DC%2BD3sXksFarsA%3D%3D Occurrence Handle12441335
J.E. Walker M. Saraste M.J. Runswick N.J. Gay (1982) ArticleTitleDistantly related sequences in the a- and b-subunits of ATP-synthase myosin kinases and other ATP-requiring enzymes and a common nucleotide binding fold EMBO J. 1 945–951 Occurrence Handle1:CAS:528:DyaL3sXhtVensbY%3D Occurrence Handle6329717
D.B. Zamble S.J. Lippard (1995) ArticleTitleCisplatin and DNA in cancer chemotherapy Trends Biochem. Sci. 20 435–439 Occurrence Handle1:CAS:528:DyaK2MXptVajtbo%3D Occurrence Handle8533159
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Accession numbers: AB194809 (AtRAD51Bα), AB194810 (AtRAD51Bβ), AB194811 (AtRAD51D).
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Osakabe, K., Abe, K., Yamanouchi, H. et al. Arabidopsis Rad51B is important for double-strand DNA breaks repair in somatic cells. Plant Mol Biol 57, 819–833 (2005). https://doi.org/10.1007/s11103-005-2187-1
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DOI: https://doi.org/10.1007/s11103-005-2187-1