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Where Does the Accurate Rice Genome Sequence Lead Us?

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References

  • Bourke, A. 1996. “ The visitation of God?: The Potato & The Great Irish Famine”. Irish Books & Media

  • Z. Cheng F. Dong T. Langdon S. Ouyang C.R. Buell M. Gu F.R. Blattner J. Jiang (2002) ArticleTitleFunctional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon Plant Cell 14 1691–1704 Occurrence Handle10.1105/tpc.003079 Occurrence Handle12172016

    Article  PubMed  Google Scholar 

  • F. Dong J.T. Miller S.A. Jackson G.L. Wang P.C. Ronald J. Jiang (1998) ArticleTitleRice (Oryza sativa) centromeric regions consist of complex DNA Proc. Natl. Acad. Sci. USA. 95 8135–8140 Occurrence Handle10.1073/pnas.95.14.8135 Occurrence Handle9653153

    Article  PubMed  Google Scholar 

  • Q. Feng Y. Zhang P. Hao S. Wang G. Fu Y. Huang Y. Li J. Zhu Y. Liu X. Hu P. Jia Y. Zhang Q. Zhao K. Ying S. Yu Y. Tang Q. Weng L. Zhang Y. Lu J. Mu Y. Lu L.S. Zhang Z. Yu D. Fan X. Liu T. Lu C. Li Y. Wu T. Sun H. Lei T. Li H. Hu J. Guan M. Wu R. Zhang B. Zhou Z. Chen L. Chen Z. Jin R. Wang H. Yin Z. Cai S. Ren G. Lv W. Gu G. Zhu Y. Tu J. Jia Y. Zhang J. Chen H. Kang X. Chen C. Shao Y. Sun Q. Hu X. Zhang W. Zhang L. Wang C. Ding H. Sheng J. Gu S. Chen L. Ni F. Zhu W. Chen L. Lan Y. Lai Z. Cheng. M. Gu J. Jiang J. Li G. Hong Y. Xue B. Han (2002) ArticleTitleSequence and analysis of rice chromosome 4 Nature 420 316–320 Occurrence Handle10.1038/nature01183 Occurrence Handle12447439

    Article  PubMed  Google Scholar 

  • Y. Harushima M. Yano A. Shomura M. Sato T. Shimano Y. Kuboki T. Yamamoto S.Y. Lin B.A. Antonio A. Parco H. Kajiya N. Huang K. Yamamoto Y. Nagamura N. Kurata G.S. Khush T. Sasaki (1998) ArticleTitleA high-density rice genetic linkage map with 2275 markers using a single F2 population Genetics 148 479–494 Occurrence Handle9475757

    PubMed  Google Scholar 

  • International Rice Genome Sequencing Project 2005. The map- based sequence of the rice genome. Nature 436: 793–800

    Google Scholar 

  • S. Katagiri J. Wu Y. Ito W. Karasawa M. Shibata H. Kanamori Y. Katayose N. Namiki T. Matsumoto T. Sasaki (2004) ArticleTitleEnd sequencing and chromosomal in silico mapping of BAC clones derived from an indica rice cultivar Kasalath Breed. Sci 54 273–279 Occurrence Handle10.1270/jsbbs.54.273

    Article  Google Scholar 

  • S.-R. Kim J. Lee S.-H. Jun S. Park. H.-G. Kang S. Kwon G An (2003) ArticleTitleTransgene structures in T-DNA-inserted rice plants Plant Mol. Biol. 52 761–773 Occurrence Handle10.1023/A:1025093101021 Occurrence Handle13677465

    Article  PubMed  Google Scholar 

  • T. Kolesnik I. Szeverenyl D. Bachmann C.S. Kumar S. Jiang R. Ramamoorthy M. Cai Z.G. Ma V. Sundaresan S. Ramachandran (2004) ArticleTitleEstablishing an efficient Ac/Ds tagging system in rice: large-scale analysis of Ds flanking sequences Plant J. 37 301–314 Occurrence Handle14690513

    PubMed  Google Scholar 

  • S.R. McCouch G. Kochert Z.H. Yu Z.Y. Wang G.S. Khush W.R. Coffman S.D. Tanksley (1988) ArticleTitleMolecular mapping of rice chromosomes Theor. Appl. Genet. 76 815–829 Occurrence Handle10.1007/BF00273666

    Article  Google Scholar 

  • A. Miyao K. Tanaka K. Murata H. Sawaki S. Takeda K. Abe Y. Shinozuka K. Onosato H. Hirochika (2003) ArticleTitleTarget site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome Plant Cell 16 1771–1780 Occurrence Handle10.1105/tpc.012559

    Article  Google Scholar 

  • S. Saji Y. Umehara B.A. Antonio H. Yamane H. Tanoue T. Baba H. Aoki N. Ishige J. Wu K. Koike T. Matsumoto T. Sasaki (2001) ArticleTitleA physical map with yeast artificial chromosome (YAC) clones covering 63% of the 12 rice chromosomes Genome 44 32–37 Occurrence Handle10.1139/gen-44-1-32 Occurrence Handle11269353

    Article  PubMed  Google Scholar 

  • J. Salse B. Piegu R. Cooke M. Delseny (2004) ArticleTitleNew in␣silico insight into the synteny between rice (Oryza sariva L.) and maize (Zea mays L.) highlights reshuffling and identifies new duplications in the rice genome Plant J. 38 396–409 Occurrence Handle10.1111/j.1365-313X.2004.02058.x Occurrence Handle15086801

    Article  PubMed  Google Scholar 

  • T. Sasaki (2003) ArticleTitleRice genome analysis: understanding the genetic secrets of the rice plant Breed. Sci. 53 281–289 Occurrence Handle10.1270/jsbbs.53.281

    Article  Google Scholar 

  • T. Sasaki B. Burr (2000) ArticleTitleInternational Rice Genome Sequencing Project: the effort to completely sequence the rice genome Curr. Opin. Plant Biol. 3 138–141 Occurrence Handle10.1016/S1369-5266(99)00047-3 Occurrence Handle10712951

    Article  PubMed  Google Scholar 

  • T. Sasaki Matsumoto K. Yamamoto K. Sakata T. Baba Y. Katayose J. Wu Y. Niimura Z. Cheng Y. Nagamura B.A. Antonio H. Kanamori S. Hosakawa M. Masukawa K. Arikawa Y. Chiden M. Hayashi M. Okamoto T. Ando H. Aoki K. Arita M. Hamada C. Harada S. Hijishita M. Honda Y. Ichikawa A. Idonuma M. Iijima M. Ikeda M. Ikeno S. Ito Y. Ito Y. Ito A. Iwabuchi K. Kamiya W. Karasawa S. Katagiri A. Kikuta N. Kobayashi I. Kono K. Machita T. Maehara H. Mizuno T. Mizubayashi Y. Mukai H. Nagasaki M. Nakashima Y. Nakama Y. Nakamichi M. Nakamura N. Namiki M. Negishi I. Ohta N. Ono S. Saji K. Sakai M. Shibata T. Shimokawa A. Shomura J. Song Y. Takazaki K. Terasawa K. Tsuji K. Waki H.Y. Yamagata H. Yamane S. Yoshiki R. Yoshihara K. Yukawa H. Zhong H.Y. Iwama T. Endo H. Ito J.H. Nahn H.I. Kim M.Y. Eun M. Yano J. Jiang T. Gojobori (2002) ArticleTitleThe genome sequence and structure of rice chromosome 1 Nature 420 312–316 Occurrence Handle10.1038/nature01184 Occurrence Handle12447438

    Article  PubMed  Google Scholar 

  • S.D. Tanksley (1993) ArticleTitleMapping polygenes Ann. Rev. Genetics 27 205–233 Occurrence Handle10.1146/annurev.ge.27.120193.001225

    Article  Google Scholar 

  • S.D. Tanksley (2004) ArticleTitleThe genetic, developmental, and molecular bases of fruit size and shape variation in tomato Plant Cell 16 IssueIDSuppl S181–S189 Occurrence Handle10.1105/tpc.018119 Occurrence Handle15131251

    Article  PubMed  Google Scholar 

  • InstitutionalAuthorNameThe Arabidopsis Genome Initiative (2000) ArticleTitleAnalysis of the genome sequence of the flowering plant Arabidopsis thaliana Nature 408 796–815

    Google Scholar 

  • InstitutionalAuthorNameThe Rice Chromosome 10 Sequencing Consortium (2003) ArticleTitleIn-depth view of structure, activity, and evolution of rice chromosome 10 Science 300 1566–1569

    Google Scholar 

  • S. Wu A. Druka H. Horvath A. Kleinhofs C.G. Kannangara D. Wettstein Particlevon (2000) ArticleTitleFunctional characterization of seed coat-specific members of the barley germin gene family Plant Physiol. Biochem. 38 685–698 Occurrence Handle10.1016/S0981-9428(00)01176-1

    Article  Google Scholar 

  • J. Wu N. Kurata H. Tanoue T. Shimokawa Y. Umehara M. Yano T. Sasaki (1998) ArticleTitlePhysical mapping of duplicated regions of two chromosome ends in rice Genetics 150 1595–1603 Occurrence Handle9832535

    PubMed  Google Scholar 

  • J. Wu. H. Yamagata M. Hayashi-Tsugane S. Hijishita M. Fujisawa M. Shibata Y. Ito M. Nakamura M. Sakaguchi R. Yosihara H. Kobayashi K. Ito W. Karasawa M. Yamamoto S. Saji S. Katagiri H. Kanamori N. Namiki Y. Katayose T. Matsumoto T. Sasaki (2004) ArticleTitleComposition and structure of the centromeric region of rice chromosome 8 Plant Cell 16 967–976 Occurrence Handle10.1105/tpc.019273 Occurrence Handle15037733

    Article  PubMed  Google Scholar 

  • M. Yano S. Kojima Y. Takahashi H. Lin T. Sasaki (2001) ArticleTitleGenetic control of flowering time in rice, a short-day plant Plant Phys. 127 1425–1429 Occurrence Handle10.1104/pp.127.4.1425

    Article  Google Scholar 

  • Y. Zhang Y. Huang L. Zhang Y. Li T. Lu Y. Lu. Q. Feng Q. Zhao Z. Cheng Y. Xue R.D. Wing B. Han (2004) ArticleTitleStructural features of the rice chromosome 4 centromere Nucleic Acids Res. 32 2023–2030 Occurrence Handle10.1093/nar/gkh521 Occurrence Handle15064362

    Article  PubMed  Google Scholar 

  • Q. Zhao Y. Zhang Z. Cheng M. Chen S. Wang Q. Feng Y. Huamg Y. Li Y. Tang B. Zhou Z. Chen S. Yu J. Zhu X. Hu J. Mu K. Ying P. Hao L. Zhang Y. Lu L.S. Zhang Y. Liu Z. Yu D. Fan Q. Weng L. Chen T. Lu X. Liu P. Jia T. Sun Y. Wu Y. Zhang Y. Lu C. Li R. Wang H. Lei T. Li H. Hu M. Wu R. Zhang J. Guan J. Zhu G. Fu M. Gu G. Hong Y. Xue R. Wing J. Jiang B. Han (2002) ArticleTitleA fine physical map of the rice chromosome 4 Genome Res. 12 817–823 Occurrence Handle10.1101/gr.48902 Occurrence Handle11997348

    Article  PubMed  Google Scholar 

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Authors and Affiliations

  1. Rice Genome Research Program, National Institute of Agrobiological Sciences, 1-2, Kannondai 2-chome, Tsukuba, Ibaraki, 305-8602, Japan

    Takuji Sasaki & Baltazar Antonio

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  1. Takuji Sasaki
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  2. Baltazar Antonio
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Correspondence to Takuji Sasaki.

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Sasaki, T., Antonio, B. Where Does the Accurate Rice Genome Sequence Lead Us?. Plant Mol Biol 59, 27–32 (2005). https://doi.org/10.1007/s11103-005-1224-4

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  • DOI: https://doi.org/10.1007/s11103-005-1224-4

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