Abstract
The pathway from UDP-glucose to UDP-xylose has been characterised in differentiating tobacco tissue. A xylogenic suspension cell culture of tobacco has been used as a source for the purification of the enzymes responsible for the oxidation of UDP-glucose to UDP-glucuronic acid and its subsequent decarboxylation to UDP-xylose. Protein purification and transcriptional studies show that two possible candidates can contribute to the first reaction. Most of the enzyme activity in the cultured cells could be accounted for by a protein with an M r of 43 kDa which had dual specificity for UDP-glucose and ethanol. The cognate cDNA, with similarity to alcohol dehydrogenases (NtADH2) was expressed in E. coli to confirm the dual specificity. A second UDP-glucose dehydrogenase, corresponding to the monospecific form, ubiquitous amongst plants and animals, could not be purified from the tobacco cell cultures. However, two cDNAs were cloned with high similarity to the family of UDP-glucose dehydrogenases. Transcripts of both types of dehydrogenase showed highest expression in tissues undergoing secondary wall synthesis. The UDP-glucuronate decarboxylase was purified as polypeptides of M r 87 and 40 kDa. Peptide fingerprinting of the latter polypeptide identified it as a form of UDP-glucuronate decarboxylase and functionality was established by expressing the cognate cDNA in E. coli. Expression of 40 kDa polypeptide and its corresponding mRNA was also found to be highest in tissues associated with secondary wall formation.
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Abbreviations
- ADH:
-
alcohol dehydrogenase
- M r :
-
apparent molecular mass
- Nt:
-
Nicotiana tabacum
- UDPGlc:
-
UDP-glucose
- UDPGIcA:
-
UDP-glucuronic acid
- UDPGlcADCX:
-
UDP-glucuronate decarboxylase
- UDP:
-
glucose dehydrogenase
- UDP:
-
uridine diphosphate
- UDPXyl:
-
UDP-xylose
- UXS:
-
UDP-xylose synthase
References
H. Ankel E. Ankel D.S. Feingold J.S. Schutzbach (1967) ArticleTitleFormation of UDP-xylose in algae Biochim. Biophys. Acta 136 72–75
A. Anterola N.G. Lewis (2002) ArticleTitleTrends in lignin modification: a comprehensive analysis of the effects of genetic manipulations/mutations on lignification and vascular integrity Phytochemistry 61 221–294 Occurrence Handle10.1016/S0031-9422(02)00211-X Occurrence Handle1:CAS:528:DC%2BD38XnsVWktL8%3D Occurrence Handle12359514
M.E. Baker R. Blaso (1992) ArticleTitleExpansion of the mammalian 3-beta-hydroxysteroid dehydrogenase/plant dehydroflavonol reductase superfamily to include a bacterial UDP-galactose-4-epimerase and open reading frames in vaccinia virus and fish lymphocystis disease virus FEBS Letts. 301 89–93
M. Bar-Peled C.L. Griffith T.L. Doering (2001) ArticleTitleFunctional cloning and characterisation of a UDP glucuronic acid decarboxylase: the pathogenic fungus Cryptococcus neoformanselucidates UDP-xylose synthesis Proc. Natl. Acad. Sci. USA 98 12003–12008
C.R. Bellamacina (1996) ArticleTitleThe nicotinamide dinucleotide binding motif: a comaparison of nucleotide binding proteins FASEB J. 10 1257–1269
S. Baud M.N. Vaultier C. Rochat (2004) ArticleTitleStructure and expression profile of the sucrose synthase multigene family in Arabidopsis J. Exp. Bot. 55 397–409
K.A. Blee E.R. Wheatley V.A. Bonham G.P. Mitchell D. Robertson A.R. Slabas M.M. Burrell P. Wojtaszek G.P. Bolwell (2001) ArticleTitleProteomic analysis reveals a novel set of cell wall proteins in a transformed tobacco cell culture that synthesises secondary walls as determined by biochemical and morphological parameters Planta 212 404–415
Bolwell, G.P. 2001. Protein Purification from plant sources. In: (S. Roe (ed.), Protein Purification Applications: A Practical Approach. Oxford University Press, pp. 135–158
M. Bucher K.A. Brander S. Sbicego T. Mandel C. Kuhlemeier (1995) ArticleTitleAerobic fermentation in tobacco pollen Plant Mol. Biol. 28 739–750
R.E. Campbell S.C. Mosimann I. Vande Rijn M.E. Tanner N.C.J. Strynadka (2000) ArticleTitleThe first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the two-fold oxidation Biochemistry 39 7012–7023
A.J. Carlile L.V. Bindschedler A.M. Bailey P. Bowyer J.M. Clarkson R.M. Cooper (2000) ArticleTitleCharacterization of SNP1, a cell wall-degrading trypsin, produced during infection by Stagonospora nodorum Mol. Plant-Microbe Interact. 13 538–550
P. Chomczynsky N. Sacchi (1987) ArticleTitleSingle-step method of RNA isolation by acid guanidium thiocyanate-phenol-chloroform extraction Anal. Biochem. 162 156–159 Occurrence Handle10.1006/abio.1987.9999 Occurrence Handle1:CAS:528:DyaL2sXitFSns7Y%3D Occurrence Handle2440339
H.J. Chung R.J. Ferl (1999) ArticleTitleArabidopsis alcohol dehydrogenase expression in both shoots and roots is conditioned by root growth environment Plant Physiol. 121 429–436
G. Dalessandro D.H. Northcote (1977) ArticleTitleChanges in enzymic activities of nucleoside diphosphate sugar interconversions during differentiation of cambium to xylem in sycamore and poplar Biochem. J. 162 267–279
A. Faik N.J. Price N.V. Raikhel K. Keegstra (2002) ArticleTitleAn Arabidopsis gene encoding an alpha-xylosyltransferase involved in xyloglucan biosynthesis Proc. Natl. Acad. Sci. USA. 99 7797–7802
T.M. Fulton J. Chunwongse S.D. Tanksley (1995) ArticleTitleMicroprep protocol for extraction of DNA from tomato and other herbaceous plants Plant Mol. Biol. Rep. 13 207–209
T. Goujon Z. Minic A. El Amrani O. Lerouxel E. Aletti C. Lapierre (2003) ArticleTitleAtBXL1, a novel higher plant (Arabidopsis thaliana) putative beta-xylosidase gene, is involved in secondary cell wall metabolism and plant development Plant J. 33 677–690
R. Gregerson M. McLean M. Beld A.G.M. Gerats J. Strommer (1991) ArticleTitleStructure, expression, chromosomal location and product of the gene encoding ADH1 in petunia Plant Mol. Biol. 17 37–48
A.D. Harper M. Bar-Peled (2002) ArticleTitleBiosynthesis of UDP-Xylose. Cloning and characterization of a novel Arabidopsis gene family, UXS, Encoding Soluble and putative membrane-bound UDP-glucuronic acid decarboxylase isoforms Plant Physiol. 130 2188–2198
J. Hempel J. Perozich H. Romovacek A. Hinich I. Kuo D.S. Feingold (1994) ArticleTitleUDP-glucose dehydrogenase from bovine liver-primary structure and relationships to other dehydrogenases Protein Sci. 3 1074–1080
B. Hinterberg C. Klos R. Tenhaken (2002) ArticleTitleRecombinant UDP-glucose dehydrogenase from soybean Plant Physiol. Biochem. 40 1011–1017
H. Johansson F. Sterky B. Amini J. Lundeberg L.A. Kleczkowski (2002) ArticleTitleMolecular cloning and characterization of a cDNA encoding poplar UDP-glucose dehydrogenase, a key gene of hemicellulose/pectin formation Biochim. Biophys. Acta 1576 53–58
K.V. John J.S. Schutzbach H. Ankel (1977) ArticleTitleSeparation and allosteric properties of two forms of UDP-glucuronate carboxy-lyase J. Biol. Chem. 252 8013–8017
M. Kobayashi H. Nakagawa I. Suda I. Miyagawa T. Matoh (2002) ArticleTitlePurification and cloning of UDP-D-glucuronate carboxy-lyase (UDP-D-xylose synthase) from pea seedlings Plant Cell Physiol. 43 1259–1265
K.E. Koch Z. Ying Y. Wu W.T. Avigne (2000) ArticleTitleMultiple path of sugar-sensing and a sugar/oxygen overlap for genes of sucrose and ethanol metabolism J. Exp. Bot. 51 417–427
H. Kuroyama Y. Tsumuraya (2001) ArticleTitleA xylosyltransferase that synthesizes beta-(1–>4)-xylans in wheat (Triticum aestivum L.) seedlings Planta 213 231–240
Z.N. Kyossev R.R. Drake S.V. Kyosseva A.D. Elbein (1995) ArticleTitleSynthesis of a new photoaffinity probe, 5-azido-[32P]UDPxylose, by UDPglucuronate carboxylyase from wheat germ Eur. J. Biochem. 228 109–112
P. Lerouge M. Cabanes-Macheteau C. Rayon A.C. Fischette-Laine V. Gomord L. Faye (1998) ArticleTitleN-glycoprotein biosynthesis in plants: recent developments and future trends Plant Mol. Biol. 38 31–48
M.W. Loewus F.A. Loewus (1980) ArticleTitleThe C-5 hydrogen isotope-effect in myo-inositol 1-phosphate synthase as evidence for the myo-inositol oxidation-pathway Carbohydr. Res. 82 333–342
D.P. Matton P. Constabel N. Brisson (1990) ArticleTitleAlcohol dehydrogenase gene expression in potato following elicitor and stress treatment Plant Mol. Biol. 14 775–783
U. Matern H. Grisebach (1977) ArticleTitleUDP-apiose/UDP-xylose synthase. Subunit composition and binding studies Eur. J. Biochem. 74 303–312
J. Memelink J.H.C. Hoge R.A. Schilperoort (1987) ArticleTitleCytokinin stress changes the developmental regulation of several defence-related genes in tobacco EMBO J. 6 3579–3583
J.L. Moriarity K.J. Hurt A.C. Resnick P.B. Storm W. Laroy R.L. Schnaar S.H. Snyder (2002) ArticleTitleUDP-glucuronate decarboxylase, a key enzyme in proteoglycan synthesis J. Biol. Chem. 277 16968–16975
Reim, D.F. and Speicher, D.W. 1997. Chemical analysis. In: J.E. Coligan, B.M. Dunn, H.L. Ploegh, D.W. Speicher and P.T. Wingfield, (Eds.), Current Protocols in Protein sciences. John Wiley and Sons, Inc. USA, Chapter 11.
W.D. Reiter G.F. Vanzin (2001) ArticleTitleMolecular genetics of nucleotide sugar interconversion pathways in plants Plant Mol. Biol. 47 95–113
D. Robertson I. Beech G.P. Bolwell (1995) ArticleTitleRegulation of the enzymes of UDP-sugar metabolism during differentiation of French bean Phytochemistry 39 21–28
D. Robertson B.A. McCormack G.P. Bolwell (1995) ArticleTitleCell wall polysaccharide biosynthesis and related metabolismin elicitor-stressed cells of French bean (Phaseolus vulgaris L.) Biochem. J. 306 745–750
D. Robertson C. Smith G.P. Bolwell (1996) ArticleTitleInducible UDP-glucose dehydrogenase from French bean (Phaseolus vulgaris L.) locates to vascular tissue and has alcohol dehydrogenase activity Biochem. J. 313 311–317
M.W. Rodgers G.P. Bolwell (1992) ArticleTitlePartial purification of Golgi-bound arabinosyl transferase and two isoforms of xylosyl transferase from French Bean (Phaseolus vulgaris L.) Biochem. J. 288 817–822
G.J. Seifert (2004) ArticleTitleNucleotide sugar interconversions and cell wall biosynthesis: how to bring the inside to the outside Curr. Opp. Plant Biol. 7 277–284
B. Seitz C. Klos M. Wurm R. Tenhaken (2000) ArticleTitleMatrix polysaccharide precursors in Arabidopsis cell walls are synthesized by alternate pathways with organ-specific expression patterns Plant J. 21 537–546
W.J. Simon J.J. Hall I. Suzuki N. Murata A.R. Slabas (2002) ArticleTitleProteomic study of the soluble proteins of the unicellular cyanobacterium Synechocytis sp PCC6803 using automated matrix automated matrix-assisted laser desorption/ionization-time of flight peptide mass fingerprinting Proteomics 2 1735–1742
J. Speirs E. Lee K. Holt K. Yong-Duk N. Steele Scott B. Loveys W. Schuch (1998) ArticleTitleGenetic manipulation of alcohol dehydrogenase levels in ripening tomato fruit affects the balance of some flavor aldehydes and alcohols Plant Physiol 117 1047–1058
D.C. Stewart L. Copeland (1998) ArticleTitleUridine 5′-diphosphate-glucose dehydrogenase from soybean nodules Plant Physiol. 116 349–355
D.C. Stewart L. Copeland (1999) ArticleTitleKinetic properties of UDP-glucose dehydrogenase from soybean nodules Plant Sci. 147 119–125
S.D. Tanksley R.A. Jones (1981) ArticleTitleEffects of O2 stress on tomato alcohol dehydrogenase activity – description of a second ADH coding gene Biochem. Genet. 19 397–409
R. Tenhaken O. Thulke (1996) ArticleTitleCloning of an enzyme that synthesises a key nucleotide sugar precursor of hemicellulose biosynthesis from soybean: UDP-glucose dehydrogenase Plant Physiol. 112 1127–1134
W. Turner F.C. Botha (2002) ArticleTitlePurification and kinetic properties of UDP-glucose dehydrogenase from sugarcane Arch. Biochem. Biophys. 407 209–216
Wheatley. E.R. (2001). UDP-D-glucuronate decarboxylase: purification and immunocytochemical analysis. PhD Dissertation. London University
E.R. Wheatley D.R. Davies G.P. Bolwell (2002) ArticleTitleCharacterisation and immunolocation of an 87 kDa polypeptide associated with UDP-glucuronic acid decarboxylase activity from differentiating tobacco cells (Nicotiana tabacum L.) Phytochemistry 61 771–780 Occurrence Handle10.1016/S0031-9422(02)00399-0
R.K. Wierenga P. Terpstra W.G.J. Hol (1986) ArticleTitlePrediction of the occurrence of the ADP-binding beta alpha beta fold in proteins, using an amino acid sequence fingerprint J. Mol. Biol. 187 101–107
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Bindschedler, L.V., Wheatley, E., Gay, E. et al. Characterisation and expression of the pathway from UDP-glucose to UDP-xylose in differentiating tobacco tissue. Plant Mol Biol 57, 285–301 (2005). https://doi.org/10.1007/s11103-004-7795-7
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DOI: https://doi.org/10.1007/s11103-004-7795-7