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Effect of siRNA pre-Exposure on Subsequent Response to siRNA Therapy

ABSTRACT

Purpose

An alternative cancer therapy based on RNA interference (RNAi) has shown considerable promise but the possibility of resistance development is not known. This study explored the possibility of therapeutic resistance against siRNA nanoparticles in human cancer cells.

Methods

Two approaches to siRNA treatment were undertaken using lipid-modified polyethylenimines, a single high concentration (shock) and repeated increasing concentrations (gradual). The targets were Mcl-1, RPS6KA5 and KSP in MDA-MB-435 cells.

Results

There was no evidence of resistance development in shock-treated cells, while the decrease in mRNA levels of targeted proteins was not as robust in naïve cells in gradual treatment. However, silencing efficiency was restored after a 7-day recovery period when expression of suppressed proteins returned to normal levels. Cellular uptake of siRNA was not affected by pre-treatments. Other mediators involved in cell survival and proliferation were altered in siRNA-treated cells, but only JUN silencing led to a heightened loss of viability. In vivo experiments demonstrated similar silencing efficiency at mRNA level after repeat doses.

Conclusions

Human cancer cells responded to repeat siRNA nanoparticles in a similar fashion after a temporary initial alteration and little, if any, resistance was evident against repeated siRNA treatments.

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Abbreviations

FAM:

Fluorescein amidite

KSP:

Kinesin spindle protein

Mcl-1:

Myeloid leukemia cell differentiation protein

mRNA:

Messenger RNA

NT:

Non-treated

PEI-LA:

Linoleic acid-substituted polyethylenimine

RISC:

RNA-induced silencing complex

RQ:

Relative quantity

RT-PCR:

Real-time polymerase chain reaction

siRNA:

Short interfering RNA

REFERENCES

  1. Boumendjel A, Baubichon-Cortay H, Trompier D, Perrotton T, Di Pietro A. Anticancer multidrug resistance mediated by MRP1: recent advances in the discovery of reversal agents. Med Res Rev. 2005;25:453–72.

    Article  CAS  PubMed  Google Scholar 

  2. Dean M, Fojo T, Bates S. Tumour stem cells and drug resistance. Nat Rev Cancer. 2005;5:275–84.

    Article  CAS  PubMed  Google Scholar 

  3. Gottesman MM. Mechanisms of cancer drug resistance. Annu Rev Med. 2002;53:615–27.

    Article  CAS  PubMed  Google Scholar 

  4. Bharadwaj U, Marin-Muller C, Li M, Chen C, Yao Q. Mesothelin confers pancreatic cancer cell resistance to TNF-alpha-induced apoptosis through Akt/PI3K/NF-kappaB activation and IL-6/Mcl-1 overexpression. Mol Cancer. 2011;10:106.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  5. Buchholz TA, Davis DW, McConkey DJ, Symmans WF, Valero V, Jhingran A, et al. Chemotherapy-induced apoptosis and Bcl-2 levels correlate with breast cancer response to chemotherapy. Cancer J. 2003;9:33–41.

    Article  CAS  PubMed  Google Scholar 

  6. Sekine I, Shimizu C, Nishio K, Saijo N, Tamura T. A literature review of molecular markers predictive of clinical response to cytotoxic chemotherapy in patients with breast cancer. Int J Clin Oncol. 2009;14:112–9.

    Article  CAS  PubMed  Google Scholar 

  7. Kanwar RK, Cheung CH, Chang JY, Kanwar JR. Recent advances in anti-survivin treatments for cancer. Curr Med Chem. 2010;17:1509–15.

    Article  CAS  PubMed  Google Scholar 

  8. Wagle N, Emery C, Berger MF, Davis MJ, Sawyer A, Pochanard P, et al. Dissecting therapeutic resistance to RAF inhibition in melanoma by tumor genomic profiling. J Clin Oncol. 2011;29:3085–96.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  9. Wykosky J, Mukasa A, Furnari F, Cavenee WK. Escape from targeted inhibition: the dark side of kinase inhibitor therapy. Cell Cycle. 2010;9:1661–2.

    Article  CAS  PubMed  Google Scholar 

  10. Soverini S, Martinelli G, Colarossi S, Gnani A, Rondoni M, Castagnetti F, et al. Second-line treatment with dasatinib in patients resistant to imatinib can select novel inhibitor-specific BCR-ABL mutants in Ph+ ALL. Lancet Oncol. 2007;8:273–4.

    Article  PubMed  Google Scholar 

  11. Romano E, Pradervand S, Paillusson A, Weber J, Harshman K, Muehlethaler K, et al. Identification of multiple mechanisms of resistance to vemurafenib in a patient with BRAFV600E-mutated cutaneous melanoma successfully rechallenged after progression. Clin Cancer Res. 2013;19:5749–57.

    Article  CAS  PubMed  Google Scholar 

  12. Aliabadi HM, Landry B, Sun C, Tang T, Uludag H. Supramolecular assemblies in functional siRNA delivery: where do we stand? Biomaterials. 2012;33:2546–69.

    Article  CAS  PubMed  Google Scholar 

  13. Raemdonck K, Vandenbroucke RE, Demeester J, Sanders NN, De Smedt SC. Maintaining the silence: reflections on long-term RNAi. Drug Discov Today. 2008;13:917–31.

    Article  CAS  PubMed  Google Scholar 

  14. Mescalchin A, Detzer A, Wecke M, Overhoff M, Wünsche W, Sczakiel G. Cellular uptake and intracellular release are major obstacles to the therapeutic application of siRNA: novel options by phosphorothioate-stimulated delivery. Expert Opin Biol Ther. 2007;7:1531–8.

    Article  CAS  PubMed  Google Scholar 

  15. Bartlett DW, Davis ME. Physicochemical and biological characterization of targeted, nucleic acid-containing nanoparticles. Bioconjug Chem. 2007;18:456–68.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  16. Zheng ZM, Tang S, Tao M. Development of resistance to RNAi in mammalian cells. Ann N Y Acad Sci. 2005;1058:105–18.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  17. Konishi M, Wu CH, Kaito M, Hayashi K, Watanabe S, Adachi Y, et al. siRNA-resistance in treated HCV replicon cells is correlated with the development of specific HCV mutations. J Viral Hepat. 2006;13:756–61.

    Article  PubMed  Google Scholar 

  18. Aliabadi HM, Maranchuk R, Kucharski C, Mahdipoor P, Hugh J, Uludağ H. Effective response of doxorubicin-sensitive and -resistant breast cancer cells to combinational siRNA therapy. J Control Release. 2013;172:219–28.

    Article  CAS  PubMed  Google Scholar 

  19. Incani V, Tunis E, Clements BA, Olson C, Kucharski C, Lavasanifar A, et al. Palmitic acid substitution on cationic polymers for effective delivery of plasmid DNA to bone marrow stromal cells. J Biomed Mater Res A. 2007;81:493–504.

    Article  PubMed  Google Scholar 

  20. Neamnark A, Suwantong O, Bahadur RK, Hsu CY, Supaphol P, Uludağ H. Aliphatic lipid substitution on 2 kDa polyethylenimine improves plasmid delivery and transgene expression. Mol Pharm. 2009;6:1798–815.

    Article  CAS  PubMed  Google Scholar 

  21. Aliabadi HM, Landry B, Bahadur RK, Neamnark A, Suwantong O, Uludağ H. Impact of lipid substitution on assembly and delivery of siRNA by cationic polymers. Macromol Biosci. 2011;11:662–72.

    Article  CAS  PubMed  Google Scholar 

  22. Wright CS. Structural comparison of the two distinct sugar binding sites in wheat germ agglutinin isolectin II. J Mol Biol. 1984;178:91–104.

    Article  CAS  PubMed  Google Scholar 

  23. Booy EP, Henson ES, Gibson SB. Epidermal growth factor regulates Mcl-1 expression through the MAPK-Elk-1 signalling pathway contributing to cell survival in breast cancer. Oncogene. 2011;30:2367–78.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  24. Inuzuka H, Fukushima H, Shaik S, Liu P, Lau AW, Wei W. Mcl-1 ubiquitination and destruction. Oncotarget. 2011;2:239–44.

    Article  PubMed Central  PubMed  Google Scholar 

  25. Anjum R, Blenis J. The RSK family of kinases: emerging roles in cellular signalling. Nat Rev Mol Cell Biol. 2008;9:747–58.

    Article  CAS  PubMed  Google Scholar 

  26. Marra E, Palombo F, Ciliberto G, Aurisicchio L. Kinesin spindle protein SiRNA slows tumor progression. J Cell Physiol. 2013;228:58–64.

    Article  CAS  PubMed  Google Scholar 

  27. Tabernero J, Shapiro GI, LoRusso PM, Cervantes A, Schwartz GK, Weiss GJ, et al. First-in-humans trial of an RNA interference therapeutic targeting VEGF and KSP in cancer patients with liver involvement. Cancer Discov. 2013;3:406–17.

    Article  CAS  PubMed  Google Scholar 

  28. Aliabadi HM, Landry B, Mahdipoor P, Hsu CY, Uludag H. Effective down-regulation of breast cancer resistance protein (BCRP) by siRNA delivery using lipid-substituted aliphatic polymers. Eur J Pharm Biopharm. 2012;81:33–42.

    Article  CAS  PubMed  Google Scholar 

  29. Ladunga I. More complete gene silencing by fewer siRNAs: transparent optimized design and biophysical signature. Nucleic Acids Res. 2007;35:433–40.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  30. Altieri DC. Survivin, cancer networks and pathway-directed drug discovery. Nat Rev Cancer. 2008;8:61–70.

    Article  CAS  PubMed  Google Scholar 

  31. Klein B, Tarte K, Jourdan M, Mathouk K, Moreaux J, Jourdan E, et al. Survival and proliferation factors of normal and malignant plasma cells. Int J Hematol. 2003;78:106–13.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  32. Chang F, Steelman LS, Lee JT, Shelton JG, Navolanic PM, Blalock WL, et al. Signal transduction mediated by the Ras/Raf/MEK/ERK pathway from cytokine receptors to transcription factors: potential targeting for therapeutic intervention. Leukemia. 2003;17:1263–93.

    Article  CAS  PubMed  Google Scholar 

  33. Bruno B, Giaccone L, Rotta M, Anderson K, Boccadoro M. Novel targeted drugs for the treatment of multiple myeloma: from bench to bedside. Leukemia. 2005;19:1729–38.

    Article  CAS  PubMed  Google Scholar 

  34. Hernandez-Aya LF, Gonzalez-Angulo AM. Targeting the phosphatidylinositol 3-kinase signaling pathway in breast cancer. Oncologist. 2011;16:404–14.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  35. Yin Q, Shen J, Chen L, Zhang Z, Gu W, Li Y. Overcoming multidrug resistance by co-delivery of Mdr-1 and survivin-targeting RNA with reduction-responsible cationic poly(beta-amino esters). Biomaterials. 2012;33:6495–506.

    Article  CAS  PubMed  Google Scholar 

  36. Aliabadi HM, Mahdipoor P, Uludag H. Polymeric delivery of siRNA for dual silencing of Mcl-1 and P-glycoprotein and apoptosis induction in drug-resistant breast cancer cells. Cancer Gene Ther. 2013;20:169–77.

    Article  CAS  PubMed  Google Scholar 

  37. Sellappan S, Grijalva R, Zhou X, Yang W, Eli MB, Mills GB, et al. Lineage infidelity of MDA-MB-435 cells: expression of melanocyte proteins in a breast cancer cell line. Cancer Res. 2004;64:3479–85.

    Article  CAS  PubMed  Google Scholar 

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ACKNOWLEDGMENTS AND DISCLOSURES

The authors would like to thank Mrs. Geraldine Barron for her invaluable help with development and optimization of confocal microscopy, and Dr. Robert Clarke (Georgetown University, Washington, DC) for providing the MDA-435 cells. This project was financially supported by a Breast Cancer Research Grant from Canadian Breast Cancer Foundation (CBCF) and a NSERC Discovery Grant.

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Correspondence to Hamidreza Montazeri Aliabadi or Hasan Uludağ.

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Montazeri Aliabadi, H., Mahdipoor, P., Kucharsky, C. et al. Effect of siRNA pre-Exposure on Subsequent Response to siRNA Therapy. Pharm Res 32, 3813–3826 (2015). https://doi.org/10.1007/s11095-015-1741-z

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  • DOI: https://doi.org/10.1007/s11095-015-1741-z

KEY WORDS

  • siRNA
  • cancer therapy
  • resistance
  • polymeric carriers