Skip to main content

Catalytic Activities Of [GADV]-Peptides

Formation and Establishment of [GADV]-Protein World for the Emergence of Life

Abstract

We have previously postulated a novel hypothesis for the origin of life, assuming that life on the earth originated from “[GADV]-protein world”, not from the “RNA world” (see Ikehara's review, 2002). The [GADV]-protein world is constituted from peptides and proteins with random sequences of four amino acids (glycine [G], alanine [A], aspartic acid [D] and valine [V]), which accumulated by pseudo-replication of the [GADV]-proteins. To obtain evidence for the hypothesis, we produced [GADV]-peptides by repeated heat-drying of the amino acids for 30 cycles ([GADV]-P30) and examined whether the peptides have some catalytic activities or not. From the results, it was found that the [GADV]-P30 can hydrolyze several kinds of chemical bonds in molecules, such as umbelliferyl-β-D-galactoside, glycine-p-nitroanilide and bovine serum albumin. This suggests that [GADV]-P30 could play an important role in the accumulation of [GADV]-proteins through pseudo-replication, leading to the emergence of life. We further show that [GADV]-octapaptides with random sequences, but containing no cyclic compounds as diketepiperazines, have catalytic activity, hydrolyzing peptide bonds in a natural protein, bovine serum albumin. The catalytic activity of the octapeptides was much higher than the [GADV]-P30 produced through repeated heat-drying treatments. These results also support the [GADV]-protein-world hypothesis of the origin of life (see Ikehara's review, 2002). Possible steps for the emergence of life on the primitive earth are presented.

This is a preview of subscription content, access via your institution.

References

  • De Duve, C.: 1991, Blue Print for a Cell, Burlington, NC, Neil Patterson Publishers.

    Google Scholar 

  • Gilbert, W.: 1986, The RNA World, Nature 319, 618

    Article  Google Scholar 

  • Gesteland, R. F., Cech, T. R. and Atkins, J. F.: 1999, The RNA World (2nd ed.). Cold Spring Harbor Laboratory Press, New York.

    Google Scholar 

  • Orgel, L. E.: 1994, The Origin of Life on the Earth, Sci. Amer., October, 53–61.

  • Harada, K. and Fox, S. W.: 1964, Nature 201, 335–336.

    PubMed  Google Scholar 

  • Ikehara, K.: 2001, Origins of Gene, Genetic Code, Protein and Life: Comprehensive View of Life Systems from a GNC-SNS Primitive Genetic Code Hypothesis, Viva Origino, 29, 66–85 (in Japanese).

    Google Scholar 

  • Ikehara, K.: 2002, Origins of Gene, Genetic Code, Protein and Life: Comprehensive View of Life Systems from a GNC-SNS Primitive Genetic Code Hypothesis, J. Biosci. 27, 165–186 (English version of the paper appeared in Viva Origino, 29, 66–85).

  • Ikehara, K. and Okazawa, E.: 1993, Unusually Biased Nucleotide Sequences on Sense Strands of Flavobacterium sp. Genes Produce Nonstop Frames on the Corresponding Antisense Strands, Nucl. Acids Res. 21, 2193–2199.

    PubMed  Google Scholar 

  • Ikehara, K. and Yoshida, S.: 1998, SNS Hypothesis on the Origin of the Genetic Code, Viva Origino 26, 301–310.

    Google Scholar 

  • Ikehara, K., Amada, F., Yoshida, S., Mikata, Y. and Tanaka, A.: 1996, A Possible Origin of Newly-Born Bacterial Genes: Significance of GC-Rich Nonstop Frame on Antisense Strand, Nucl. Acids Res. 24, 4249–4255.

    Article  PubMed  Google Scholar 

  • Ikehara, K., Omori, Y., Arai, R. and Hirose, A.: 2002, A Novel Theory on the Origin of the Genetic Code: A GNC-SNS Hypothesis, J. Mol. Evol. 54, 530–538.

    Article  PubMed  Google Scholar 

  • Imai, E., Honda, H., Hatori, K. and Matsuno, K.: 1999a, Autocatalytic Synthesis of Oligoglycine in a Simulated Submarine Hydrothermal System, Orig. Life Evol. Biosph. 29, 249–259.

    Article  Google Scholar 

  • Imai, E., Honda, H., Hatori, K., Brack, A. and Matsuno, K.: 1999b, Elongation of Oligopeptides in a Simulated Submarine Hydrothermal System, Science 283, 831–833.

    Article  Google Scholar 

  • Ito, M., Handa, N. and Yanagawa, H.: 1990, Synthesis of Polypeptides by Microwave Heating II. Function of Polypeptides Synthesized During Repeated Hydration-Dehydration Cycles, J. Mol. Biol. 31, 187–194.

    Google Scholar 

  • Joyce, G. F.: 1992, Directed Molecular Evolution, Sci. Amer., December, 90–97.

  • Lowry, O. H., Rowebrough, N. J., Farr, A. L. and Randa, R. J.: 1951, Protein Measurement with the Folin Phenol Reagent, J. Biol. Chem. 193, 265–275.

    PubMed  Google Scholar 

  • Miller, S. L.: 1953, A Production of Amino Acids Under Possible Primitive Earth Conditions, Science 117, 528–529.

    PubMed  Google Scholar 

  • Miller, S. L. and Orgel, L. E.: 1973, The Origin of Life, Englewood Cliffs, NJ, Prentice Hall.

    Google Scholar 

  • Miyakawa, S., Tamura, H., Sawaoka, A. B. and Kobayashi, K.: 1998, Amino Acid Synthesis from an Amorphous Cubstance Composed of Carbon, Nitrogen, and Oxygen, Appl. Phys. Lett. 72, 990–992.

    Article  Google Scholar 

  • Sakurai, M. and Yanagawa, H.: 1884, Prebiotic Synthesis of Amino Acids from Formaldehyde and Hydroxylamine in a Modified Sea Medium, Orig. Life 14, 171–176.

    Article  Google Scholar 

  • Shapiro, R.: 1984, The Improbability of Prebiotic Nucleic Acid Synthesis, Orig. Life 14, 565–570.

    Article  PubMed  Google Scholar 

  • Shapiro, R.: 1988, Prebiotic Ribose Synthesis: A Critical Analysis, Orig. Life Evol. Biosph. 18, 71–85.

    Article  PubMed  Google Scholar 

  • Shapiro, R.: 2000, A Replicator was not Involved in the Origin of Life, IUBMB Life 49, 173–176.

    Article  PubMed  Google Scholar 

  • Suwannachot, Y. and Rode, B. M.: 1998, Catalysis of Dialanine Formation by Glycine in the Salt-Induced Peptide Formation Reaction, Orig. Life Evol. Biosph. 28, 79–90.

    Article  PubMed  Google Scholar 

  • Takano, Y., Ushio, K., Masuda, H., Kaneko, T., Kobayashi, K., Takahashi, J. and Saito, T.: 2001, Determination of Organic Compounds Formed in Simulated Interstellar Dust Environment, Anal. Sci. 17, 1635–1638.

    Google Scholar 

  • Yanagawa, H. and Kojima, K.: 1985, Thermophilic Microspheres of Peptide-Like Polymers and Silicates Formed at 250 Degrees C, J. Biochem. 97, 1521–1524.

    PubMed  Google Scholar 

Download references

Author information

Affiliations

Authors

Corresponding author

Correspondence to Kenji Ikehara.

Rights and permissions

Reprints and Permissions

About this article

Cite this article

Oba, T., Fukushima, J., Maruyama, M. et al. Catalytic Activities Of [GADV]-Peptides. Orig Life Evol Biosph 35, 447–460 (2005). https://doi.org/10.1007/s11084-005-3519-5

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11084-005-3519-5

Keywords

  • origin of life
  • [GADV]-protein world hypothesis
  • pseudo-replication of [GADV]-proteins
  • prebiotic synthesis
  • chemical evolution
  • peptide catalyst
  • primitive enzyme