Skip to main content
Log in

Low DNA Sequence Diversity of the Intergenic Spacer 1 Region in the Human Skin Commensal Fungi Malassezia sympodialis and M. dermatis Isolated from Patients with Malassezia-Associated Skin Diseases and Healthy Subjects

  • Published:
Mycopathologia Aims and scope Submit manuscript

Abstract

As DNA sequences of the intergenic spacer (IGS) region in the rRNA gene show remarkable intraspecies diversity compared with the small subunit, large subunit, and internal transcribed spacer region, the IGS region has been used as an epidemiological tool in studies on Malassezia globosa and M. restricta, which are responsible for the exacerbation of atopic dermatitis (AD) and seborrheic dermatitis (SD). However, the IGS regions of M. sympodialis and M. dermatis obtained from the skin of patients with AD and SD, as well as healthy subjects, lacked sequence diversity. Of the 105 M. sympodialis strains and the 40 M. dermatis strains, the sequences of 103 (98.1 %) and 39 (97.5 %), respectively, were identical. Thus, given the lack of intraspecies diversity in the IGS regions of M. sympodialis and M. dermatis, studies of the diversity of these species should be performed using appropriate genes and not the IGS.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

References

  1. Harada K, Saito M, Sugita T, Tsuboi R. Malassezia species and their associated skin diseases. J Dermatol. 2015;42(3):250–7.

    Article  PubMed  Google Scholar 

  2. Sugita T, Boekhout T, Velegraki A. Epidemiology of Malassezia-related skin diseases. In: Boekhout T, Mayser P, Gueho-Kellermann E, Velegraki A, editors. Malassezia and the skin. Berlin: Springer; 2010. p. 65–119.

    Chapter  Google Scholar 

  3. Sugita T, Zhang E, Tanaka T, Tajima M, Tsuboi R, Ishibashi Y, Nishikawa A. Atopic dermatitis and skin fungal microorganisms. In: Esparza-Gordillo J, Dkio I, editors. Atopic dermatitis; disease etiology and clinical management. Rijeka: InTech Open Access Company; 2012. p. 123–40.

    Google Scholar 

  4. Hiruma M, Cho O, Hiruma M, Kurakado S, Sugita T, Ikeda S. Genotype analyses of human commensal scalp fungi, Malassezia globosa, and Malassezia restricta on the scalps of patients with dandruff and healthy subjects. Mycopathologia. 2014;177(5–6):263–9.

    Article  CAS  PubMed  Google Scholar 

  5. Sugita T, Kodama M, Saito M, Ito T, Kato Y, Tsuboi R, Nishikawa A. Sequence diversity of the intergenic spacer region of the rRNA gene of Malassezia globosa colonizing the skin of patients with atopic dermatitis and healthy individuals. J Clin Microbiol. 2003;41(7):3022–7.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Sugita T, Tajima M, Amaya M, Tsuboi R, Nishikawa A. Genotype analysis of Malassezia restricta as the major cutaneous flora in patients with atopic dermatitis and healthy subjects. Microbiol Immunol. 2004;48(10):755–9.

    Article  CAS  PubMed  Google Scholar 

  7. Tajima M, Sugita T, Nishikawa A, Tsuboi R. Molecular analysis of Malassezia microflora in seborrheic dermatitis patients: comparison with other diseases and healthy subjects. J Invest Dermatol. 2008;128(2):345–51.

    Article  CAS  PubMed  Google Scholar 

  8. Sugita T, Nishikawa A, Ikeda R, Shinoda T. Identification of medically relevant Trichosporon species based on sequences of internal transcribed spacer regions and construction of a database for Trichosporon identification. J Clin Microbiol. 1999;37(6):1985–93.

    CAS  PubMed  PubMed Central  Google Scholar 

  9. Wu G, Zhao H, Li C, Rajapakse MP, Wong WC, Xu J, Saunders CW, Reeder NL, Reilman RA, Scheynius A, Sun S, Billmyre BR, Li W, Averette AF, Mieczkowski P, Heitman J, Theelen B, Schroder MS, De Sessions PF, Butler G, Maurer-Stroh S, Boekhout T, Nagarajan N, Dawson TL Jr. Genus-wide comparative genomics of Malassezia delineates its phylogeny, physiology, and niche adaptation on human skin. PLoS Genet. 2015;11(11):e1005614.

    Article  PubMed  PubMed Central  Google Scholar 

  10. Sugita T, Takeo K, Hama K, Virtudazo E, Takashima M, Nishikawa A, Kucsera J, Dorogi J, Komori S, Nakagaki K, Vollekova A, Slavikova E, Farkas V. DNA sequence diversity of intergenic spacer I region in the non-lipid-dependent species Malassezia pachydermatis isolated from animals. Med Mycol. 2005;43(1):21–6.

    Article  CAS  PubMed  Google Scholar 

  11. Zhang E, Tajima M, Tsuboi R, Sugita T. Sequence diversity of the intergenic spacer region of the rRNA gene of Cryptococcus albidus isolated from the skin of patients with atopic dermatitis and healthy individuals. Microbiol Immunol. 2013;57(1):74–6.

    Article  CAS  PubMed  Google Scholar 

  12. Sugita T, Ikeda R, Shinoda T. Diversity among strains of Cryptococcus neoformans var. gattii as revealed by a sequence analysis of multiple genes and a chemotype analysis of capsular polysaccharide. Microbiol Immunol. 2001;45(11):757–68.

    Article  CAS  PubMed  Google Scholar 

  13. Sugita T, Nakajima M, Ikeda R, Matsushima T, Shinoda T. Sequence analysis of the ribosomal DNA intergenic spacer 1 regions of Trichosporon species. J Clin Microbiol. 2002;40(5):1826–30.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Taverna CG, Cordoba S, Murisengo OA, Vivot W, Davel G, Bosco-Borgeat ME. Molecular identification, genotyping, and antifungal susceptibility testing of clinically relevant Trichosporon species from Argentina. Med Mycol. 2014;52(4):356–66.

    Article  CAS  PubMed  Google Scholar 

  15. Cabanes FJ, Vega S, Castella G. Malassezia cuniculi sp. nov., a novel yeast species isolated from rabbit skin. Med Mycol. 2011;49(1):40–8.

    Article  CAS  PubMed  Google Scholar 

  16. de Bellis F, Castella G. Cabanes FJ, Bond R. Absence of DNA sequence diversity of the intergenic spacer 1 region in Malassezia nana isolates from cats. Med Mycol. 2010;48(2):427–9.

    Article  PubMed  Google Scholar 

Download references

Acknowledgments

This work was partially supported by Japan’s Ministry of Education, Culture, Sports, Science, and Technology (MEXT) Grant-in-Aid for Scientific Research on Innovative Areas (Grant #: 15H05935) and JSPS KAKENHI (Grant #: 16K08384).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Takashi Sugita.

Ethics declarations

Conflict of interest

None.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Cho, O., Sugita, T. Low DNA Sequence Diversity of the Intergenic Spacer 1 Region in the Human Skin Commensal Fungi Malassezia sympodialis and M. dermatis Isolated from Patients with Malassezia-Associated Skin Diseases and Healthy Subjects. Mycopathologia 181, 839–842 (2016). https://doi.org/10.1007/s11046-016-0034-3

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11046-016-0034-3

Keywords

Navigation