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The expression levels of DNMT3a/3b and their relationship with meat quality in beef cattle

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Abstract

To identify the effects of the expression levels of DNMT3a and DNMT3b, coding the de novo methyltransferases DNMT3a and DNMT3b, on 16 beef carcass and quality traits, 50 beef cattle liver and ribeye muscle tissue samples were collected. Quantitative real-time RT-PCR was employed to quantify the expression level of these two genes, and a basic model included fixed effects of gender, age, and expression level of these two genes was used to analyze live weight; and slaughtering batches and aging days were added when beef carcass traits and beef quality traits were analyzed, respectively. Results showed that transcripts of DNMT3a and DNMT3b were present at significantly higher levels in liver tissue than in muscle tissue, and the expression level of DNMT3a was significantly higher than that of DNMT3b in both tissues. Regression analysis found that the expression levels of DNMT3a and DNMT3b were associated with several beef quality traits, which are important in beef breeding. Findings of the present study suggested that these two genes could significantly contribute to the improvement of beef quality genetically.

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References

  1. Turek-Plewa J, Jagodziński PP (2005) The role of mammalian DNA methyltransferases in the regulation of gene expression. Cell Mol Biol Lett 10:631–647

    PubMed  CAS  Google Scholar 

  2. Yokomori N, Tawata M, Onaya T (2002) DNA demethylation modulates mouse leptin promoter activity during the differentiation of 3T3–L1 cells. Diabetologia 45:140–148

    Article  PubMed  CAS  Google Scholar 

  3. Xing J, Kang L, Jiang Y (2011) Effect of dietary betaine supplementation on lipogenesis gene expression and CpG methylation of lipoprotein lipase gene in broilers. Mol Biol Rep 38:1975–1981

    Article  PubMed  CAS  Google Scholar 

  4. Li E (2002) Chromatin modification and epigenetic reprogramming in mammalian development. Nat Rev Genet 3:662–673

    Article  PubMed  CAS  Google Scholar 

  5. Friso S, Choi SW (2002) Gene–nutrient interactions and DNA methylation. J Nutr 132:2382S–2387S

    PubMed  CAS  Google Scholar 

  6. Bestor TH (2000) The DNA methyltransferases of mammals. Hum Mol Genet 9:2395–2402

    Article  PubMed  CAS  Google Scholar 

  7. Buchanan FC, Fitzsimmons CJ, Van Kessel AG, Thue TD et al (2002) Association of a missense mutation in the bovine leptin gene with carcass fat content and leptin mRNA levels. Genet Sel Evol 34:105–116

    Article  PubMed  CAS  Google Scholar 

  8. Schlee P, Graml R, Rottmann O, Pirchner F (1994) Influence of growth-hormone genotypes on breeding values of Simmental bulls. J Anim Breed Genet 111:253–256

    Article  PubMed  CAS  Google Scholar 

  9. Bonnet M, Leroux C, Faulconnier Y, Hocquette JF et al (2000) Lipoprotein lipase activity and mRNA are up-regulated by refeeding in adipose tissue and cardiac muscle of sheep. J Nutr 130:749–756

    PubMed  CAS  Google Scholar 

  10. Gaido ML, Strobl JS (1989) Inhibition of rat growth hormone promoter activity by site-specific DNA methylation. Biochim Biophys Acta 1008:234–242

    PubMed  CAS  Google Scholar 

  11. Bird A (1999) DNA methylation de novo. Science 286:2287–2288

    Article  PubMed  CAS  Google Scholar 

  12. Kim GD, Ni J, Kelesoglu N, Roberts RJ et al (2002) Co-operation and communication between the human maintenance and de novo DNA (cytosine-5) methyltransferases. EMBO J 21:4183–4195

    Article  PubMed  CAS  Google Scholar 

  13. Kamei Y, Suganami T, Ehara T, Kanai S et al (2010) Increased expression of DNA methyltransferase 3a in obese adipose tissue: studies with transgenic mice. Obesity 18:314–321

    Article  PubMed  CAS  Google Scholar 

  14. Zeisel SH (2004) Nutritional importance of choline for brain development. J Am Coll Nutr 23:621S–626S

    PubMed  CAS  Google Scholar 

  15. Pariacote F, Van Vleck LD, Hunsley RE (1998) Genetic and phenotypic parameters for carcass traits of American Shorthorn beef cattle. J Anim Sci 76:2584–2588

    PubMed  CAS  Google Scholar 

  16. Kononoff PJ, Deobald HM, Stewart EL, Laycock AD et al (2005) The effect of a leptin single nucleotide polymorphism on quality grade, yield grade, and carcass weight of beef cattle. J Anim Sci 83:927–932

    PubMed  CAS  Google Scholar 

  17. Blumer TN, Craig HB, Pierce EA, Smart WWG Jr et al (1962) Nature and variability of marbling deposits in longissimus dorsi muscle of beef Carcasses. J Anim Sci 21:935–942

    Google Scholar 

  18. Wood JD, Richardson RI, Nute GR, Fisher AV et al (2004) Effects of fatty acids on meat quality: a review. Meat Sci 66:21–32

    Article  PubMed  CAS  Google Scholar 

  19. Wood JD, Enser M, Fisher AV, Nute GR et al (2008) Fat deposition, fatty acid composition and meat quality: a review. Meat Sci 78:343–358

    Article  PubMed  CAS  Google Scholar 

  20. Méndez RD, Meza CO, Berruecos JM, Garcés P et al (2009) A survey of beef carcass quality and quantity attributes in Mexico. J Anim Sci 87:3782–3790

    Article  PubMed  Google Scholar 

  21. Udvardi MK, Czechowski T, Scheible WR (2008) Eleven golden rules of quantitative RT-PCR. Plant Cell 20(7):1736–1737

    Article  PubMed  CAS  Google Scholar 

  22. Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25:402–408

    Article  PubMed  CAS  Google Scholar 

  23. Hoey AJ, Reich MM, Davis G, Shorthose R et al (1995) Beta 2-adrenoceptor densities do not correlate with growth, carcass quality, or meat quality in cattle. J Anim Sci 73:3281–3286

    PubMed  CAS  Google Scholar 

  24. Okano M, Bell DW, Haber DA, Li E (1999) DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 99:247–257

    Article  PubMed  CAS  Google Scholar 

  25. Robertson KD, Uzvolgyi E, Liang G, Talmadge C et al (1999) The human DNA methyltransferases (DNMTs) 1, 3a and 3b: coordinate mRNA expression in normal tissues and overexpression in tumors. Nucleic Acids Res 27:2291–2298

    Article  PubMed  CAS  Google Scholar 

  26. Golding MC, Westhusin ME (2003) Analysis of DNA (cytosine 5) methyltransferase mRNA sequence and expression in bovine preimplantation embryos, fetal and adult tissues. Gene Expr Patterns 3:551–558

    Article  PubMed  CAS  Google Scholar 

  27. Ueda Y, Okano M, Williams C, Chen T et al (2006) Roles for Dnmt3b in mammalian development: a mouse model for the ICF syndrome. Development 133:1183–1192

    Article  PubMed  CAS  Google Scholar 

  28. Yu Y, Zhang H, Tian F, Zhang W et al (2008) An integrated epigenetic and genetic analysis of DNA methyltransferase genes (DNMTs) in tumor resistant and susceptible chicken lines. PLoS One 3:2672–2685

    Article  Google Scholar 

  29. Mizuno S, Chijiwa T, Okamura T, Akashi K et al (2001) Expression of DNA methyltransferases DNMT1, 3A, and 3B in normal hematopoiesis and in acute and chronic myelogenous leukemia. Blood 97:1172–1179

    Article  PubMed  CAS  Google Scholar 

  30. Emilsson V, Thorleifsson G, Zhang B, Leonardson AS et al (2008) Genetics of gene expression and its effect on disease. Nature 452:423–428

    Article  PubMed  CAS  Google Scholar 

  31. Cianzio DS, Topel DG, Whitehurst GB, Beitz DC et al (1985) Adipose tissue growth and cellularity: changes in bovine adipocyte size and number. J Anim Sci 60:970–976

    PubMed  CAS  Google Scholar 

  32. Turner JW, Pelton LS, Cross HR (1990) Using live animal ultrasound measures of ribeye area and fat thickness in yearling Hereford bulls. J Anim Sci 68:3502–3506

    PubMed  CAS  Google Scholar 

  33. Hovenier R, Brascamp EW, Kanis E, van der Werf JH et al (1993) Economic values of optimum traits: the example of meat quality in pigs. J Anim Sci 71:1429–1433

    PubMed  CAS  Google Scholar 

  34. Kazala EC, Lozeman FJ, Mir PS, Laroche A et al (1999) Relationship of fatty acid composition to intramuscular fat content in beef from crossbred Wagyu cattle. J Anim Sci 77:1717–1725

    PubMed  CAS  Google Scholar 

  35. Oka A, Iwaki F, Dohgo T, Ohtagaki S et al (2002) Genetic effects on fatty acid composition of carcass fat of Japanese Black Wagyu steers. J Anim Sci 80:1005–1011

    PubMed  CAS  Google Scholar 

  36. Kramer DA (2005) Commentary: gene–environment interplay in the context of genetics, epigenetics, and gene expression. J Am Acad Child Adolesc Psychiatry 44:19–27

    Article  PubMed  Google Scholar 

  37. Dolinoy DC, Weidman JR, Jirtle RL (2007) Epigenetic gene regulation: linking early developmental environment to adult disease. Reprod Toxicol 23:297–307

    Article  PubMed  CAS  Google Scholar 

  38. Ehrlich M (2003) Expression of various genes is controlled by DNA methylation during mammalian development. J Cell Biochem 88:899–910

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

Grateful acknowledgements are made to guest professor Geoff Kirton from Australia and international student Tahir Usman from Pakistan for their valuable suggestion and careful proof reading of our manuscript. This study was financially supported by the Earmarked Fund for Modern Agro-industry Technology Research System (CARS-37), Key Development of New Transgenic Breeds Programs (2009ZX08009-146B), the Fund for Basic Research from the Ministry of Education of the People’s Republic of China (2011JS006), Xuelong Biological Breeding Technology and its Industrialization Project funded by National Development and Reform Commission (NDRC).

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Correspondence to Yachun Wang or Ying Yu.

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Guo, X., Liu, X., Xu, X. et al. The expression levels of DNMT3a/3b and their relationship with meat quality in beef cattle. Mol Biol Rep 39, 5473–5479 (2012). https://doi.org/10.1007/s11033-011-1349-2

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  • DOI: https://doi.org/10.1007/s11033-011-1349-2

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