Skip to main content

Advertisement

Log in

Cloning and primarily function study of two novel putative N 5-glutamine methyltransferase ( Hemk ) splice variants from mouse stem cells

  • Published:
Molecular Biology Reports Aims and scope Submit manuscript

Abstract

Methylation is one of epigenetic mechanisms regulating gene expression. The methylation pattern is determined during embryogenesis and passed over to differentiating cells and tissues. Beginning with the ESTs which were highly expressed in undifferentiated human ES cells and using homology research in mouse dbEST database, we cloned two novel putative (N 5)-glutamine methyltransferase (Hemk) splice variants termed mHemk1 and mHemk2 (Genbank accession number AY456393 and AY583759). Sequence analysis revealed that mHemk1 and mHemk2 cDNAs are 1,792 bp and 1,696 bp in length respectively. The deduced proteins have 214 amino acid residues (mHemk1) and 138 residues (mHemk2) in length and both share significant homology with (N 5)-glutamine methyltransferase (Hemk proteins) in database. Northern blot and RT-PCR analysis showed that mHemk mRNAs were abundantly expressed in undifferentiated ES cells, testis and brain, weakly expressed in differentiated ES cells and kidney, and not expressed in muscle, heart, placenta, pancreas, lung and stomach. Immunohistochemical analysis further revealed that the protein was most abundant in undifferentiated ES cells. The green fluorescent protein produced by pEGFP-C3/mHemk1 was detected mainly in the nucleus of COS7 cell lines after 24 h post-transfection. RNA interference (RNAi)-mediated knock-down method was established. Cell cycle analysis suggests that the cell proliferation decreases after RNAi with mHemk1. In vitro bioactivity assay showed that no evidence for a DNA adenine-methyltransferase activity was detected. The accumulating functional information from Hemk homology proteins in bacteria and yeast suggests that it may be an uncharacterized new mammalian N 5-glutamine methyltransferase.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8

Similar content being viewed by others

Explore related subjects

Discover the latest articles and news from researchers in related subjects, suggested using machine learning.

References

  1. Schubert HL, Blumenthal RM, Cheng X (2003) Many paths to methyltransfer: a chronicle of convergence. Trends Biochem Sci 28(6):329–335. doi:10.1016/S0968-0004(03)00090-2

    Article  CAS  PubMed  Google Scholar 

  2. Jeltsch A (2002) Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases. Chembiochem 3(4):274–293. doi:10.1002/1439-7633(20020402)3:4<274::AID-CBIC274>3.0.CO;2-S

    Article  CAS  PubMed  Google Scholar 

  3. Bogdan P, Lisa S, Fred S (2005) The N 5-Glutamine S-Adenosyl-l-Methionine-dependent methyltransferase PrmC/HemK in Chlamydia trachomatis methylates class 1 release factors. J Bacteriol 187(2):507–511. doi:10.1128/JB.187.2.507-511.2005

    Article  Google Scholar 

  4. McBride AE, Silver PA (2001) State of the Arg: protein methylation at arginine comes of age. Cell 106(1):5–8. doi:10.1016/S0092-8674(01)00423-8

    Article  CAS  PubMed  Google Scholar 

  5. Heurgue-Hamard V, Champ SP, Mora L, Merkulova RT, Kisselev LL, Buckingham RH (2005) The glutamine residue of the conserved GGQ motif in Saccharomyces cerevisiae release factor eRF1 is methylated by the product of the YDR140w gene. J Biol Chem 280(4):2439–2445. doi:10.1074/jbc.M407252200

    Article  CAS  PubMed  Google Scholar 

  6. Polevoda B, Span L, Sherman F (2006) The yeast translation release factors Mrf1p and Sup45p (eRF1) are methylated, respectively, by the methyltransferases Mtq1p and Mtq2p. J Biol Chem 281(5):2562–2571. doi:10.1074/jbc.M507651200

    Article  CAS  PubMed  Google Scholar 

  7. Nakahigashi K, Kubo N, Narita S (2002) HemK, a class of protein methyltransferase with similarity to DNA methyltransferases, methylates polypeptide chain release factors, and hemK knockout induces defects in translational termination. Proc Natl Acad Sci USA 99(3):1473–1478. doi:10.1073/pnas.032488499

    Article  CAS  PubMed  Google Scholar 

  8. Heurgue-Hamard V, Champ S, Engstrom A (2002) The hemKgene in Escherichia coli encodes the N 5-glutamine methyltransferase that modifies peptide release factors. EMBO J 21(4):769–778. doi:10.1093/emboj/21.4.769

    Article  CAS  PubMed  Google Scholar 

  9. Schubert H, Phillips J, Hil C (2003) Structures along the catalytic path way of PrmC/HemK, an N 5-glutamine AdoMet-dependent methyltransferase. Biochemistry 42(19):5592–5599. doi:10.1021/bi034026p

    Article  CAS  PubMed  Google Scholar 

  10. Le Guen L, Santos R, Camadro M (1999) Functional analysis of the hemK gene product involvement in protoporphyrinogen oxidase activity in yeast. FEMS Microbiol Lett 173(1):175–182. doi:10.1111/j.1574-6968.1999.tb13499.x

    Article  CAS  PubMed  Google Scholar 

  11. Du J, Lin G, Lu GX (2004) Screening of differential genes between human embryonic stem cell and differentiated cell. Acta Genet Sin 31(9):956–962

    CAS  PubMed  Google Scholar 

  12. Sano H, Grabowy C, Sager R (1981) Differential activity of DNA methyltransferase in the life cycle of Chlamydomonas reinhardi. Proc Natl Acad Sci USA 78(5):3118–3122. doi:10.1073/pnas.78.5.3118

    Article  CAS  PubMed  Google Scholar 

  13. Ratel D, Ravanat J-L, Charles M-P, Platel N, Breuillaud L, Lunardi J, Berger F, Wion D (2006) Undetectable levels of N6-methyl adenine in mouse DNA: cloning and analysis of PRED28, a gene coding for a putative mammalian DNA adenine methyltransferase. FEBS Lett 580:3179–3184

    Article  CAS  PubMed  Google Scholar 

  14. Jones PA, Baylin SB (2002) The fundamental role of epigenetic events in cancer. Nat Rev Genet 3(6):415–428

    CAS  PubMed  Google Scholar 

  15. Vanyushin BF (2005) Enzymatic DNA methylation is an epigenetic control for genetic functions of the cell. Biochemistry (Mosc) 70(5):488–499. doi:10.1007/s10541-005-0143-y

    Article  CAS  Google Scholar 

  16. Bujnicki JM, Radinska M (1999) Is the HemK family of putative S-adenosylmethionine-dependent methyltransferases a “missing” zeta subfamily of adenine methyltransferases? A hypothesis. IUBMB Life 48(3):247–249

    CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Guang-Xiu Lu.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Nie, DS., Liu, YB. & Lu, GX. Cloning and primarily function study of two novel putative N 5-glutamine methyltransferase ( Hemk ) splice variants from mouse stem cells. Mol Biol Rep 36, 2221–2228 (2009). https://doi.org/10.1007/s11033-008-9437-7

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11033-008-9437-7

Keywords