Article PDF
Avoid common mistakes on your manuscript.
References
Kriventseva E.V., Koch I., Apweiler R., Vingron M., Bork P., Gelfand M.S., Sunyaev S., Increase of functional diversity by alternative splicing, Trends Genet., 19 (2003) 124–128
Su Z., Wang J., Yu J., Huang X., Gu X., Evolution of alternative splicing after gene duplication, Genome Res., 16 (2006)182–189
Fitch W.M., Bush R.M., Bender C.A., Cox N.J., Long term trends in the evolution of H(3) HA1 human influenza type A, Proc. Natl. Acad. Sci. USA, 94 (1997) 7712–7718
Endo T., Ikeo K., Gojobori T., Large-scale search for genes on which positive selection may operate, Mol. Biol. Evol., 13 (1996) 685–690
Baric R.S., Yount B., Hensley L., Peel S.A., Chen W.l., Episodic evolution mediates interspecific transfer of a murine coronavirus, J. Virol., 71 (1997) 1946–1955
Wu J.C., Chiang T.Y., Shiue W.K., Wang S.Y., Sheen I.J., Huang Y.H., Syuet W.J., Recombination of hepatitis D virus RNA sequences and its implications, Mol. Biol. Evol., 16 (1999) 1622Gȴ1632
Smith N.H., Maynard Smith J., Spratt B.G., Sequence evolution of the porBgene of Neisseria gonorrhoeae and Neisseria meningitidis: evidence for positive Darwinian selection, Mol. Biol. Evol., 12 (1995) 363Gȴ370
Hughes M.K., Hughes A.L., Natural selection on Plasmodium surface proteins, Mol. Biochem. Parasitol., 71 (1995) 99–113
Weinreich D.M., Delaney N.F., DePristo M.A., Hartl D.L., Darwinian evolution can follow only very few mutational paths to fitter proteins, Science, 312 (2006) 111–114
Riley M.A., Positive selection for colicin diversity in bacteria, Mol. Biol. Evol. 10, (1993) 1048–1059
Duda T.F., Jr. Palumbi S.R., Molecular genetics of ecological diversification: duplication and rapid evolution of toxin genes of the venomous gastropod Conus, Proc. Natl. Acad. Sci. USA, 96 (1999) 6820–6823
Duda T.F., Jr., Palumbi S.R., Evolutionary diversification of multigene families: allelic selection of toxins in predatory cone snails, Mol. Biol. Evol., 17 (2000) 1286–1293
Conticello S.G., Gilad Y., Avidan N., Ben-Asher E., Levy Z., Fainzilber M., Mechanisms for evolving hypervariability: the case for conopeptides, Mol. Biol. Evol., 18 (2001) 120–131
Olivera B.M., Walker C., Cartier G.E., Hooper D., Santos A.D., Schoenfeld R., Shetty R., Watkins M., Bandyopadhyay P., Hillyard D.R., Speciation of cone snails and interspecific hyperdivergence of their venom peptides: potential evolutionary significance of introns, Ann. N.Y. Acad. Sci., 870 (1999) 223–237
Nakashima K., Ogawa T., Oda N., Hattori M., Sakaki Y., Kihara H., Ohno M., Accelerated evolution of Trimeresurus flavoviridis venom gland phospholipase A isozymes2 , Proc. Natl. Acad. Sci. USA, 90 (1993) 5964–5968
Nakashima K., Nobuhisa I., Deshimaru M., Nakai M., Ogawa T., Shimohigashi Y., Fukumaki Y., Hattori M., Sakaki Y., Hattori S., Ohno M., Accelerated evolution in the protein-coding regions is universal in crotalinae snake venom gland phospholipase A 2 isozyme genes, Proc. Natl. Acad. Sci. USA, 92 (1995) 5605–5609
Deshimaru M., Ogawa T., Nakashima K., Nobuhisa I., Chijiwa T., Shimohigashi Y., Fukumaki Y., Niwa M., Yamashina I., Hattori S., Ohno M., Accelerated evolution of crotalinae snake venom gland serine proteases, FEBS Lett., 397(1996) 83–88
Calvetea J. J., Marcinkiewiczb C., Monleónc D., Esteveac V., Celdaçd B., Juáreza P., Libia Sanz L., Snake venom disintegrins: evolution of structure and function, Toxicon 45 (2005) 1063–1074
Ohno M., Menez R., Ogawa T., Danse J.M., Shimohigashi Y., Fromen C., Ducancel F., Zinn-Justin S., Le Du M.H., Boulain J.C., Tamiya T., Menez A., Molecular evolution of snake toxins: is the functional diversity of snake toxins associated with a mechanism of accelerated evolution? Prog. Nucleic Acids Res. Mol. Biol., 59 (1998) 307–364
Ogawa T., Chijiwa T., Oda-Ueda N., Ohno M., Molecular diversity and accelerated evolution of C-type lectin-like proteins from snake venom, Toxicon, 45 (2005) 1–14
Froy O., Sagiv T., Poreh M., Urbach D., Zilberberg N., Gurevitz M., Dynamic diversification from a putative common ancestor of scorpion toxins affecting sodium, potassium, and chloride channels, J. Mol. Evol., 48 (1999) 187–196
Zhu S., Bosmans F., Tytgat J., Adaptive evolution of scorpion sodium channel toxins, J. Mol. Evol., 58 (2004) 145–153
Cao Z., Mao X., Xu X., Sheng J., Dai C., Wu Y., Luo F., Sha Y., Jiang D., Li W., Adaptive evolution after gene duplication in alpha-KT x 14 subfamily from Buthus martensii Karsch., IUBMB Life., 57 (2005) 513–521
Escoubas P., Diochot S., Corzo G., Structure and pharmacology of spider venom neurotoxins, Biochimie, 82 (2000) 893–907
Tanaka T., Nei M., Positive darwinian selection observed at the variable-region genes of immunoglobulins, Mol. Biol. Evol., 6 (1989) 447–459
Hughes A.L., Nei M., Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection, Nature, 335 (1988) 167–170
Goodwin R.L., Baumann H., Berger F.G., Patterns of divergence during evolution of α1-proteinase inhibitors in mammals, Mol. Biol. Evol., 13 (1996) 346–358
Tamechika I., Itakura M., Saruta Y., Furukawa M., Kato A., Tachibana S., Hirose S., Accelerated evolution in inhibitor domains of porcine elafin family members, J. Biol. Chem., 271 (1996) 7012–7018
Stotz H.U., Bishop J.G., Bergmann C.W., Koch M., Albersheim P., Darvill A.G, Labavitchet J.M., Identification of target amino acids that affect interactions of fungal polygalacturonases and their plant inhibitors, Mol. Physiol. Plant Pathol., 56 (2000) 117Gȴ130
Hughes A.L., The evolution of the type I interferon family in mammals, J. Mol. Evol., 41 (1995) 539–548
Nobuhisa I., Deshimaru M., Chijiwa T., Nakashima K., Ogawa T., Shimohigashi Y., Fukumaki Y., Hattori S., Kihara H., Ohno M., Structures of genes encoding phospholipase A2 inhibitors from the serum of Trimeresurus flavoviridis snake, Gene, 191 (1997) 31–37
Angata T., Margulies E.H., Green E.D., Varki A., Large-scale sequencing of the CD33-related Siglec gene cluster in five mammalian species reveals rapid evolution by multiple mechanisms, Proc. Natl. Acad. Sci. USA, 101 (2004) 13251–13256
Bishop J.G., Dean A.M., Mitchell-Olds T., Rapid evolution in plant chitinases: molecular targets of selection in plant–pathogen coevolution, Proc. Natl. Acad. Sci. USA, 97 (2000) 5322–5327
Ogawa T., Ishii C., Kagawa D., Muramoto K., Kamiya H., Accelerated evolution in the protein-coding region of galectin cDNAs, congerin I and congerin II, from skin mucus of conger eel (Conger myriaster), Biosci. Biotechnol. Biochem., 63 (1999) 1203–1208
Ogawa T., Shirai T., Shionyu-Mitsuyama C., Yamane T., Kamiya H., Muramoto K., The speciation of conger eel galectins by rapid adaptive evolution, Glycoconj. J., 19 (2004) 451–458
Ford M.J., Molecular evolution of transferrin: evidence for positive selection in salmonids, Mol. Biol. Evol., 18 (2001) 639–47
Semple C.A., Rolfe M., Dorin J.R., Duplication and selection in the evolution of primate beta-defensin genes, Genome Biol., 4 (2003) R31
Lynn D.J., Lloyd A.T., Fares M.A., O’Farrelly C., Evidence of positively selected sites in mammalian alpha-defensins, Mol. Biol. Evol., 21 (2004) 819–827
Kitano, T. and Saitou, N., Evolution of Rh blood group genes have experienced gene conversions and positive selection, J. Mol. Evol., 49 (1995)615–626
Zhang J., Rosenberg H.F., Nei M., Positive darwinian selection after gene duplication in primate ribonuclease genes, Proc. Natl. Acad. Sci. USA, 95 (1998) 3708–3713
Zhang J., Zhang Y.P., Rosenberg H.F., Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey, Nat. Genet., 30 (2002) 411–415
OhAinle M., Kerns J.A., Malik H.S., Emerman M., Adaptive evolution and antiviral activity of the conserved mammalian cytidine deaminase APOBEC3H, J. Virol., 80 (2006) 3853–3862
Vacquier V.D., Swanson W.J., Lee Y.H., Positive darwinian selection on two homologous fertilization proteins: what is the selective pressure driving their divergence? J. Mol. Evol., 44 (1997) 15–22
Hellberg M.E., Moy G.W., Vacquier V.D., Positive selection and propeptide repeats promote rapid interspecific divergence of a gastropod sperm protein, Mol. Biol. Evol., 17 (2000) 458–466
Galindo B.E., Vacquier V.D., Swanson W.J., Positive selection in the egg receptor for abalone sperm lysine, Proc. Natl. Acad. Sci. USA, 100 (2003) 4639–4643
McCartney M.A., Lessios H.A., Adaptive evolution of sperm bindin tracks egg incompatibility in neotropical sea urchins of the genus Echinometra, Mol. Biol. Evol., 21 (2004) 732–745
Mah S.A., Swanson W.J., Vacquier V.D., Positive selection in the carbohydrate recognition domains of sea urchin sperm receptor for egg jelly (suREJ) proteins, Mol. Biol. Evol., 22 (2005) 533–541
Rooney A.P., Zhang J., Rapid evolution of a primate sperm protein: relaxation of functional constraint or positive darwinian selection? Mol. Biol. Evol. 16 (1999) 706–710
Turner, L.M. and Hoekstra, H.E., Adaptive evolution of fertilization proteins within a genus: Variation in ZP2 and ZP3 in Deer Mice (Peromyscus), Mol. Biol. Evol., 23 (2006) 1656–1669
Ishimizu T., Endo T., Yamaguchi-Kabata Y., Nakamura K.T., Sakiyama F., Norioka S., Identification of regions in which positive selection may operate in S-RNase of Rosaceae: implications for S-allele-specific recognition sites in S-Rnase, FEBS Lett., 440 (1998) 337–342
Tsaur S.C., Wu C-I., Positive selection and the molecular evolution of a gene of male reproduction, Acp26Aa of Drosophila, Mol. Biol. Evol., 14 (1997) 544–549
Karn R.C., Nachman M.W., Reduced nucleotide variability at an androgen-binding protein locus (Abpa) in house mice: evidence for positive natural selection, Mol. Biol. Evol., 16 (1999) 1192–1197
Pamilo P., O’Neill R.W., Evolution of Sry genes, Mol. Biol. Evol., 14 (1997) 49–55
Ting C.T., Tsaur S.C., Wu M.L., Wu C.I., A rapidly evolving homeobox at the site of a hybrid sterility gene, Science, 282 (1998) 1501–1504
Sutton K.A., Wilkinson M.F., Rapid evolution of a homeodomain: evidence for positive selection, J. Mol. Evol., 45 (1997) 579–588
Frankel N., Hasson E., Iusem N.D., Rossi M.S., Adaptive evolution of the water stress-induced gene Asr2 in Lycopersicon species dwelling in arid habitats, Mol. Biol. Evol. 20 (2003) 1955–1962
O’Connell M.J., McInerney J.O., Adaptive evolution of the human fatty acid synthase gene: support for the cancer selection and fat utilization hypotheses? Gene, 360 (2005) 151–159
Baudry E., Desmadril M., Werren J.H., Rapid adaptive evolution of the tumor suppressor gene pten in an insect lineage, J. Mol. Evol., 62 (2006) 738–744
Yang Z., Bielawski J.P., Statistical methods for detecting molecular adaptation, TREE,15 (2000) 496–503
Swanson W.J., Adaptive evolution of genes and gene families, Curr. Opin. Genet. Develop., 13 (2003) 617–622
Swanson W.J., Vacquier V.D., The rapid evolution of reproductive proteins, Nat. Rev. Genet., 3 (2002) 137–144
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Ogawa, T. Molecular diversity of proteins in biological offense and defense systems. Mol Divers 10, 511–514 (2006). https://doi.org/10.1007/s11030-006-9048-y
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11030-006-9048-y