Skip to main content
Log in

Pyridoxal phosphate inhibits the group I intron splicing

  • Published:
Molecular and Cellular Biochemistry Aims and scope Submit manuscript

Abstract

The coenzyme pyridoxal phosphate and its analogs were tested for inhibition of the self-splicing of primary transcripts of the phage T4 thymidylate synthase gene (td). Of all compounds examined, the pyridoxal phosphate was the most potent inhibitor and the order of inhibitory efficiency for compounds tested was as follows: pyridoxal phosphate > pyridoxal > pyridoxine > pyridoxamine > pyridoxic acid. Increasing Mg2+ concentration up to 14 mM overcame the suppression of self-splicing by pyridoxal phosphate up to 95% of the level of normal splicing, implying its interference with effective catalysis of Mg2+. The kinetic analysis demonstrated that pyridoxal phosphate acts as a mixed type noncompetitive inhibitor for the td intron RNA with a Ki of 11.8 mM. The specificity of the splicing inhibition by pyridoxal phosphate is predominantly due to increases in Km and decreases in Vmax values. (Mol Cell Biochem xxx: 17–34, 2005)

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Chu FK, Maley GF, Maley F, Belfort M: Intervening sequence in the thymidylate synthase gene of bacteriophage T4. Proc Natl Acad Sci USA 81: 3049–3053, 1984

    PubMed  CAS  Google Scholar 

  2. Cech TR, Tanner NK, Tinoco I Jr, Weir BR, Zuker M, Perlman PS: Secondary structure of the Tetrahymena ribosomal RNA intervening sequence. Proc Natl Acad Sci USA 80: 3903–3907, 1983

    PubMed  CAS  Google Scholar 

  3. Chu FK, Maley GF, West DK, Belfort M, Maley F: Characterization of the intron in the phage T4 thymidylate synthase gene and evidence for its self-excision from the primary transcript. Cell 45: 157–166, 1986

    Article  PubMed  CAS  Google Scholar 

  4. Bass B, Cech TR: Deoxyguanosine and dideoxyguanosine are competitive inhibitors of self-splicing of the Tetrahymena ribosomal RNA precursor. Biochemistry 25: 4473–4477, 1986

    Article  PubMed  CAS  Google Scholar 

  5. Yarus M: A specific amino acid binding site composed of RNA. Science 240: 1751–1758, 1988

    PubMed  CAS  Google Scholar 

  6. von Ahsen U, Schroeder R: Streptomycin inhibits splicing of group 1 introns by competition with the guanosine substrate. Nucl Acids Res 19: 2261–2265, 1991

    PubMed  CAS  Google Scholar 

  7. Wank H, Rogers J, Davies J, Schroeder R: Peptide antibiotics of the tuberactinomycin family as inhibitors of group 1 intron splicing. J Mol Biol 236: 1001–1010, 1994

    Article  PubMed  CAS  Google Scholar 

  8. von Ahsen U, Davies J, Schroeder R: Antibiotic inhibition of group 1 ribozyme function. Nature 353: 368–370, 1991

    Article  PubMed  CAS  Google Scholar 

  9. Liu Y, Tidwell RR, Leibowitz MJ: Inhibition of in vitro splicing of group 1 intron of Pneumocystis carnii. J Eukaryot. Microbiol 41: 31–38, 1994

    CAS  Google Scholar 

  10. Park IK, Lim EH, Shin S: Spectinomycin inhibits the self-splicing of group 1 intron RNA. Biochem Biophys Res Commun 269: 574–579, 2000

    Article  PubMed  CAS  Google Scholar 

  11. Park IK, Sung JS: K+ and Mg2+ ions promote the self-splicing of the td intron RNA inhibited by spectinomycin. Biochim Biophys Acta 1492: 94–99, 2000

    PubMed  CAS  Google Scholar 

  12. Rogers J, Davies J: The pseudodisaccharides: a novel class group 1 intron splicing inhibitors. Nucl Acids Res 24: 4983–4988, 1994

    Google Scholar 

  13. Kim JY, Park I.K: The flavin coenzymes: a new class of group 1 intron inhibitors. Biochim Biophys Acta 1475: 56–61, 2000

    Google Scholar 

  14. Ahn SJ, Park IK: The coenzyme thiamine pyrophosphate inhibits the self-splicing of the group 1 intron RNA. Int J Biochem Cell Biol 35: 157–167, 2003

    Article  PubMed  CAS  Google Scholar 

  15. Park IK, Kim JY: NAD+ inhibits the self-splicing of the group 1 intron. Biochem Biophys Res Commun 281: 206–211, 2001

    PubMed  CAS  Google Scholar 

  16. Kim JH, Park IK: Inhibition of the group 1 ribozyme splicing by NADP+. Mol Cell Biochem 252: 285–293, 2003

    PubMed  CAS  Google Scholar 

  17. Buggs T: An Introduction to Enzyme and Coenzyme Chemistry. Blackwell Science, 1997

  18. Shin S, Park IK: The functional importance of an internal guide sequence in the T4 td intron in RNA splicing. J Biochem Mol Biol 26: 614–619, 1993

    CAS  Google Scholar 

  19. Puglisi JD, Tinoco I Jr: Absorbance melting curves of RNA. Methods Enzymol 180: 304–325, 1989

    PubMed  CAS  Google Scholar 

  20. Hoch I, Berens C, Westhof E, Schroeder R: Antibiotic inhibition of RNA catalysis: Neomycin B binds to the catalytic core of the td group 1 intron displacing essential metal ions. J Mol Biol 282: 557–569, 1998

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to In Kook Park.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Jung, C., Shin, S. & Park, I.K. Pyridoxal phosphate inhibits the group I intron splicing. Mol Cell Biochem 280, 17–23 (2005). https://doi.org/10.1007/s11010-005-8010-0

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11010-005-8010-0

Keyword

Navigation