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Wavelet Analysis of Big Data Contaminated by Large Noise in an fMRI Study of Neuroplasticity

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Abstract

Functional magnetic resonance imaging (fMRI) allows researchers to analyze brain activity on a voxel level, but using this ability is complicated by dealing with Big Data and large noise. A traditional remedy is averaging over large parts of brain in combination with more advanced technical innovations in reducing fMRI noise. In this paper a novel statistical approach, based on a wavelet analysis of standard fMRI data, is proposed and its application to an fMRI study of neuron plasticity of 24 healthy adults is presented. The aim of that study was to recognize changes in connectivity between left and right motor cortices (the neuroplasticity) after button clicking training sessions. A conventional method of the data analysis, based on averaging images, has implied that for the group of 24 participants the connectivity increased after the training. The proposed wavelet analysis suggests to analyze pathways between left and right hemispheres on a voxel-to-voxel level and for each participant via estimation of corresponding cross-correlations. This immediately necessitates statistical analysis of large-p-small-n correlation matrices contaminated by large noise. Furthermore, distributions that we are dealing in the analysis are neither Gaussian nor sub-Gaussian but sub-exponential. The paper explains how the problem may be solved and presents results of a dynamic analysis of the ability of a human brain to reorganize itself for 24 healthy adults. Results show that the ability of a brain to reorganize itself varies widely even among healthy individuals, and this observation is important for our understanding of a human brain and treatment of brain diseases.

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References

  • Anderson J et al. (2010) Decreased interhemispheric functional connectivity in autism. Cereb Cortex 21:1134–1146

    Article  Google Scholar 

  • Barrett K, Barman S, Boitano S, Brooks H (2016) Ganong’s review of medical physiology. McGraw-Hill, New York

    Google Scholar 

  • Birn R (2012) The role of physiological noise in resting-state functional connectivity. Neuroimage 62(2):864–870

    Article  Google Scholar 

  • Caballero-Gaudes C, Reynolds RC (2017) Methods for cleaning the BOLD fMRI signal. Neuroimage 154:128–149

    Article  Google Scholar 

  • Cai TT (2017) Global testing and large-scale multiple testing for high-dimensional covariance structures. Ann Rev Statist Appl 4:423–446

    Article  Google Scholar 

  • Casella G, Berger R (2002) Statistical inference, 2nd edn. Duxbury, New York

    MATH  Google Scholar 

  • Chang C, Glover G (2009) Effects of model-based physiological noise correction on default mode network anti-correlations and correlations. Neuroimage 47(4):1448–1459

    Article  Google Scholar 

  • Chen L et al. (2017) Biophysical and neural basis of resting state functional connectivity: Evidence from non-human primates. Magn Resonan Imag 39:71–81

    Article  Google Scholar 

  • Dimyan M, Cohen L (2011) Neuroplasticity in the context of motor rehabilitation after stroke. Nat Rev Neurol 7(2):76–85

    Article  Google Scholar 

  • Efromovich S (1999a) Nonparametric curve estimation: methods, theory and applications. Springer, New York

  • Efromovich S (1999b) Quasi-linear wavelet estimation. J Amer Statist Assoc 94:189–204

    Article  MathSciNet  Google Scholar 

  • Efromovich S, Valdez-Jasso Z (2010) Aggregated wavelet estimation and its applications to ultra-fast fMRI. J Nonparamteric Statist 22:841–857

    Article  MathSciNet  Google Scholar 

  • Efromovich S, Smirnova E (2014) Statistical analysis of large cross-covariance and cross-correlation matrices produced by fMRI images. J Biometric Biostat 5:1–8

    Google Scholar 

  • Fan J, Han F, Liu H (2014) Challenges in big data analysis. Nat Sci Rev 1:293–324

    Article  Google Scholar 

  • He H, Liu T (2012) A geometric view of global signal confounds in resting state functional MRI. Neuroimage 59(3):2339–2348

    Article  MathSciNet  Google Scholar 

  • Henson R et al. (1999) The slice-timing problem in event-related fMRI. NeuroImage 9:125

    Google Scholar 

  • Johnstone I, Silverman B (1997) Wavelet threshold estimators for data with correlated noise. J Royal Statist Soc 59:319–351

    Article  MathSciNet  Google Scholar 

  • Kelly C et al. (2011) Reduced interhemispheric resting state functional connectivity in cocaine addiction. Biol Psych 69:684–692

    Article  Google Scholar 

  • Lazar N (2008) The statistical analysis of functional MRI data. Springer, New York

    MATH  Google Scholar 

  • Marusak H et al. (2017) Dynamic functional connectivity of neurocognitive networks in children. Human Brain Mapp 38(1):97–108

    Article  Google Scholar 

  • Mill R et al. (2017) Empirical validation of directed functional connectivity. Neuroimage 146(1):275–287

    Article  Google Scholar 

  • Murphy K, Birn R, Bandettini P (2013) Resting-state fMRI confounds and cleanup. Neuroimage 80:349–359

    Article  Google Scholar 

  • Nason G (2008) Wavelet methods in statistics with R. Springer, New York

    Book  Google Scholar 

  • Ogden T (1997) Essential wavelets for statistical applications and data analysis. Basel, Birkhäuser

    Book  Google Scholar 

  • Petrov V (1975) Sums of independent random variables. Springer, New York

    Book  Google Scholar 

  • Tung K et al. (2013) Alterations in resting functional connectivity due to recent motor task. Neuroimage 78:316–324

    Article  Google Scholar 

  • Valdez-Jasso Z (2010) Aggregated wavelet estimation with applications. PhD Thesis, UTDallas, Richardson

  • Vidakovic B (1999) Statistical modeling by wavelets. Wiley, New York

    Book  Google Scholar 

  • Weissenbacher A et al. (2009) Correlations and anticorrelations in resting-state functional connectivity MRI: a quantitative comparison of preprocessing strategies. Neuroimage 47(4):1408–1416

    Article  Google Scholar 

  • Welvaert M, Rosseel Y (2013) On the definition of signal-to-noise ratio and contrast-to-noise ratio for fMRI data. PLOSONE 8(11):1–10

    Article  Google Scholar 

  • Welvaert M et al. (2011) neuRosim: an R package for generating fMRI data. J Statist Softw 44(10):1–18

    Article  Google Scholar 

  • Worsley K, Evans A, Marrett S, Neelin P (1992) A three-dimensional statistical analysis for CBF activation studies in human brain. J Cereb Blood Flow Metab 12:900–918

    Article  Google Scholar 

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Acknowledgements

Suggestions of the editors and the reviewers are greatly appreciated.

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Correspondence to Sam Efromovich.

Additional information

Sam Efromovich work was supported by NSF Grant DMS-1513461 and NSA Grant H982301310212

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Efromovich, S., Wu, J. Wavelet Analysis of Big Data Contaminated by Large Noise in an fMRI Study of Neuroplasticity. Methodol Comput Appl Probab 20, 1381–1402 (2018). https://doi.org/10.1007/s11009-018-9626-3

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  • DOI: https://doi.org/10.1007/s11009-018-9626-3

Keywords

Mathematical Subject Classification (2010)

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