Abstract
A study was conducted of the interaction of an octadecameric oligodeoxynucleotide (dON) containing the BCL2 mRNA translation start with K562 cells. Both in solution and upon lipofection, the binding of dON used at a low concentration (≤30 nM) at 37°C involved two steps: saturating surface binding with the cell membrane and internalization. Three phases were revealed in the dynamics of internalization: the extent and rate of internalization increased during the first hour of incubation; decreased during the second hour; and then increased again, which was assumed to reflect the priming of new dON-binding sites. The binding constant and the number of binding sites were estimated at 10°C (the conditions preventing internalization) by consecutive dissociation of dON-cell complexes formed in 1 h at 37°C. Incubation of dON with cells led to the priming of new high-affinity binding sites and an increase of the binding constant to a level characteristic of high-affinity ligand-receptor interactions (109 M−1). High-affinity receptor-mediated binding preceded internalization of dON. Lipofection increased the binding constant and the number of binding sites severalfold but had virtually no effect on the temporal pattern and the extent of dON internalization.
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REFERENCES
Knorre D., Vlassov V., Zarytova V., Lebedev A., Fedorova O. 1994. In: Design and Targeted Reactions of Oligonucleotide Derivates. Boca Raton: CRC, pp. 150–298.
Dias N., Stein C.A. 2002. Antisense oligonucleotides: Basic concepts and mechanisms. Mol. Cancer Therapeut. 1, 347–355.
Elbashir S.M., Harborth J., Lendeckel W., Yalcin A., Weber K., Tuschl T. 2001. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature. 411, 494–498.
Aravin A.A., Klenov V.V., Vagin V.V., Rozovsky Ya.M., Gvozdev V.A. 2002. Role of double-stranded DNA in suppression of gene expression in eukaryotes. Mol. Biol. 36, 240–251.
Stein C.A., Krieg A. 1997. Non-antisense effects of oligodeoxynucleotides. In: Antisense Technology. Eds. Lichteinstein C., Nellen W. Oxford: JRL, 240–264.
Krieg A.M., Yi A.K., Matson S., Waldschmidt T.J., Bishop G.A., Teasdale R., Koretzky G.A., Klinman D.M. 1995. CpG motifs in bacterial DNA trigger direct B-cell activation. Nature. 74, 546–549.
Lenert P., Yi A.K., Krieg A.M., Stunz L.L., Ashman R.F. 2003. Inhibitory oligonucleotides block the induction of AP-1 transcription factor by stimulatory CpG oligonucleotides in B cells. Antisense Nucleic Acid Drug Dev. 13, 143–150.
Perez J.R., Yuling L., Stein C.A., Mayjumder S., van Oorschot A., Narayanan R. 1994. Sequence-independent induction of Sp1 transcription factor activity by phosphorothioate oligodeoxynucleotides. Proc. Natl. Acad. Sci. USA. 91, 5957–5961.
Loke S.L., Stein C.A., Zhang X.H., Mori K., Nakanishi M., Subasinghe C., Cohen J.S., Neckers L.M. 1989. Characterization of oligonucleotide transport into living cells. Proc. Natl. Acad. Sci. USA. 86, 3474–3478.
Yacubov L., Deeva E., Zarytova F., Ivanova E., Ryte A., Yurchenko L., Vlassov V. 1989. Mechanism of oligonucleotide uptake by cells: Involvement of specific receptors? Proc. Natl. Acad. Sci. USA. 86, 6454–6458.
Lactionov P., Dazard J.-E., Vives E., Rycova E., Piette J., Vlassov V., Lebleu B. 1999. Characterisation of membrane oligonucleotide-binding proteins and nucleotide uptake in keratinocytes. Nucleic Acids Res. 27, 2315–2324.
Akhlynina T.V., Borovkova T.V., Levina A.S., Zarytova V.F., Timofeev A.M., Dukhovenskaya E.A., Grineva N.I. 2003. Abstr. Int. Conf. Targeting RNA: Artificial Ribonucleases, Conformational Traps and RNA Interference, Novosibirsk, Russia, p.36.
Roychoudhury R., Wu R. 1980. Terminal transferase-catalysed addition of nucleotides to the 3′ termini of DNA. In: Methods in Enzymology. Eds. Grossman L., Moldave K. N.Y.: Academic, vol. 65, part I, pp. 43–62.
Osterman L.A. 1983. Issledovanie biologicheskikh makromolekul izoelektrofokusirovaniem, immunoelektroforezom i radioizotopnymi metodami (Analysis of Biological Macromolecules by Electrophoresis, Isoelectrofocusing, and Radioisotope Methods), Moscow: Nauka.
Haigler H., Maxfield F., Willingham M., Pastan I. 1980. Dancilcadaverine inhibits internalization of 125I-epidermal growth factor in BALB 3T3 cells. J. Biol. Chem. 255, 1239–1241.
Tennenberg S.D., Zemlan F.P., Solomkin J.S. 1988. Characterization of N-formyl-methionyl-leucyl-phenylalanine receptors on human neutrophils. Effects of isolation and temperature on receptor expression and func-tional activity. J. Immunol. 141, 3937–3944.
Sidorov G.V., Myasoedov N.F. 1974. Analysis of hydrogen isotope exchange between purines and water. Radiokhimiya. 16, 922–926.
Hoffman J.F., Linderman J.J., Omann G.M. 1996. Receptor up-regulation, internalization and interconverting receptor states. J. Biol. Chem. 271, 18394–18404.
Sklar L.A., Finney D.A. 1982. Analysis of ligand-receptor interactions with the fluorescence activated cell sorter. Cytometry. 3, 161–165.
Guvacova M.A., Yacubov L.A., Vlodavsky I., Tonkinson J.L., Stein C.A. 1995. Phosphorothioate oligodeoxynucleotides bind to basic fibroblast growth factor, inhibit its binding to cell surface receptors and remove it from low affinity binding sites on extracellular matrix. J. Histochem. Cytochem. 270, 2620–2627.
Wen-Yi Gao, Jaroszewski J.W., Cohen J.S., Yung-Chi Cheng. 1990. Mechanisms of inhibition of herpes simplex virus type 2 growth by 28-mer phosphorothioate oligodeoxycytidine. J. Biol. Chem. 33, 20172–20178.
Rockwell P., O’Conner W.J., King K., Goldstein N.I., Zhang L.M., Stein C.A. 1997. Cell-surface perturbations of the epidermal growth factor and vascular endothelial growth factor receptors by phosphorothioate oligodeoxynucleotides. Proc. Natl. Acad. Sci. USA. 94, 6523–6598.
Bergan R.C., Kyle E., Connell Y., Neckers L. 1995. Inhibition of protein-tyrosine kinase activity in intact cells by the aptameric action of oligodeoxynucleotides. Antisense Res. Dev. 5, 33–38.
NTI Database Summary.
Deininger M.W., Vieira S., Mendiola R., Schultheis B., Goldman J.M., Melo J.V. 2000. BCR-ABL tyrosine kinase activity regulates the expression of multiple genes implicated in the pathogenesis of chronic myeloid leukemia. Cancer Res. 60, 2049–2055.
Schindler T., Bornmann W., Pellicena P., Miller W.T., Clarkson B., Kuriyan J. 2000. Structural mechanism for STI-571 inhibition of abelson tyrosine kinase. Science. 289, 1938–1942.
Hatzi E., Badet J. 1999. Expression of receptors for human angiogenin in vascular smooth muscle cells. Eur. J. Biochem. 260, 825–832.
Sklar L.A., Finney D.A., Oades Z.G., Jesaitis A.J., Painter R.G., Cochrane C.G. 1984. The dynamics of ligand-receptor interactions. Real-time analyses of association, dissociation, and internalization of an N-formyl peptide and its receptors on the human neutrophil. J Biol. Chem. 259, 5661–5669.
Stein C.A., Tonkinson J.L., Zhang L. M., Yakubov L., Gervasoni J., Taub R., Rotenberg S.A. 1993. Dynamics of internalization of phosphodiester oligonucleotides in HL60 cells. Biochemistry. 32, 4855–4861.
Siess D., Vedder C., Merkens L., Tanaka T., Freed A., McCoy S., Heinrich M., Deffebach M., Bennet R., Hefeneider H. 2000. A human gene coding for membrane-associated nucleic acid-binding protein. J. Biol. Chem. 275, 33655–33662.
Pantin V.I., Sats N.V., Surin V.L., Egorov L.V., Solovyev G.Ya., Borovkova T.V., Grineva N.I. 1991. Penetration of oligo/polynucleotides and their polyalkylated derivatives into rat cells transformed by simian adenovirus DNA. Mol. Biol. 25, 177–184.
Beltinger C., Saragovi H., Smith R., LeSauteur L., Shah N., DeDionisio L., Christensen L., Raible A., Jarett L., Gewitz A. 1995. Binding, uptake, and intracellular trafficking of phosphorothioate-modified oligodeoxynucleotides. J. Clin. Invest. 95, 1814–1823.
Hartmann G., Krug A., Bidlingmaier M., Hacker U., Eigler A., Albrecht R., Strasburger C. J., Endres S. 1988. Spontaneous and cationic lipid-mediated uptake of antisense oligonucleotides in human monocytes and lymphocytes. J. Pharmacol. Exp. Ther. 285, 920–928.
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Translated from Molekulyarnaya Biologiya, Vol. 39, No. 2, 2005, pp. 235–244.
Original Russian Text Copyright © 2005 by Timofeev, Borovkova, Nydenova, Akhlynina, Shmarov, Grineva.
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Timofeev, A.M., Borovkova, T.V., Nydenova, N.M. et al. Binding and transfer of an oligodeoxynucleotide containing the translation initiation site of the BCL2 mRNA into K562 cells. Mol Biol 39, 210–217 (2005). https://doi.org/10.1007/s11008-005-0031-y
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DOI: https://doi.org/10.1007/s11008-005-0031-y