Abstract
Speeds of sound have been measured for aqueous solutions of the nucleosides adenosine, cytidine, and uridine at the temperatures T = (288.15 and 313.15) K and at the pressures p = (10, 20, 40, 60, 80, and 100) MPa. Using the methods described in our previous work, the partial molar volumes at infinite dilution, \(V_{2}^{\text{o}}\), the partial molar isentropic compressions at infinite dilution, \(K_{S,2}^{\text{o}}\), and the partial molar isothermal compressions at infinite dilution, \(K_{T,2}^{\text{o}} \left\{ {K_{T,2}^{\text{o}} \, = \, - \left( {\partial V_{2}^{\text{o}} /\partial p)_{T} } \right)} \right\}\), for the nucleosides were derived from the speed of sound data at elevated pressures. The thermodynamic properties \(V_{2}^{\text{o}}\) and \(K_{T,2}^{\text{o}}\) were combined with those determined previously for T = 298.15 K to create 3D surfaces that display the pressure and temperature dependences of these properties. The purine nucleoside adenosine displays distinctly different trends in these properties from those of the pyrimidine nucleosides cytidine and uridine. A semi-empirical model was used to rationalize the \(K_{T,2}^{\text{o}}\) results in terms of likely changes in hydration as a function of temperature and pressure.
Similar content being viewed by others
References
Dworkin, J.P., Lazcano, A., Miller, S.L.: The roads to and from the RNA world. J. Theor. Biol. 222, 127–134 (2003)
Bartel, D.P., Unrau, P.J.: Constructing an RNA world. Trends Cell Biol. 9, M9–M13 (1999)
Cech, T.R.: The RNA worlds in context. Cold Spring Harb. Perspect. Biol. 4, a006742 (2012)
Gilbert, W.: Origin of life: the RNA world. Nature 319, 618 (1986)
Higgs, P.G., Lehman, N.: The RNA world: molecular cooperation at the origins of life. Nat. Rev. Genet. 16, 7–17 (2015)
Sankaran, N.: The RNA world at 30. J. Mol. Evol. 83, 169–175 (2016)
Levy, M., Miller, S.L.: The stability of the RNA bases: implications for the origin of life. Proc. Natl. Acad. Sci. USA 95, 7933–7938 (1998)
Moulton, V., Gardner, P.P., Pointon, R.F., Creamer, L.K., Jameson, G.B., Penny, D.: RNA folding argues against a hot-start origin of life. J. Mol. Evol. 51, 416–421 (2000)
Bada, J.L.: How life began on earth: a status report. Earth Planet. Sci. Lett. 226, 1–15 (2004)
Hedwig, G.R., Høgseth, E., Høiland, H.: Volumetric properties of the nucleosides adenosine, cytidine, and uridine in aqueous solution at T = 298.15 K and p = (10 to 120 MPa). J. Chem. Thermodyn. 61, 117–125 (2013)
Hedwig, G.R., Jameson, G.B., Høiland, H.: Volumetric properties at high pressures of the nucleosides inosine, 2′-deoxyinosine, and 2′-deoxyguanosine and the volumetric properties of guanosine derived using group additivity methods. J. Chem. Eng. Data 59, 3593–3604 (2014)
Hedwig, G.R., Høgseth, E., Høiland, H.: Volumetric properties of the glycyl group of proteins in aqueous solution at high pressures. Phys. Chem. Chem. Phys. 10, 884–897 (2008)
Hedwig, G.R., Jameson, G.B.: Volumetric interaction coefficients for some nucleosides in aqueous solution at T = 298.15 K. J. Chem. Thermodyn. 59, 188–194 (2013)
Tewari, Y.B., Klein, R., Vaudin, M.D., Goldberg, R.N.: Saturation molalities and standard molar enthalpies of solution of adenosine(cr), guanosine·2H2O(cr), inosine(cr), and xanthsine·2H2O(cr) in H2O(l). J. Chem. Thermodyn. 35, 1681–1702 (2003)
Tewari, Y.B., Gery, P.D., Vaudin, M.D., Mighell, A.D., Klein, R., Goldberg, R.N.: Saturation molalities and standard molar enthalpies of solution of cytidine(cr), hypoxanthine(cr), thymidine(cr), thymine(cr), uridine(cr), and xanthine(cr) in H2O(l). J. Chem. Thermodyn. 36, 645–658 (2004)
Blandamer, M.J., Davis, M.I., Douhéret, G., Reis, J.C.R.: Apparent molar isentropic compressions and expansions of solutions. Chem. Soc. Rev. 30, 8–15 (2001)
Desnoyers, J.E., Philip, P.R.: Isothermal compressibilities of aqueous solutions of tetraalkylammonium bromides. Can. J. Chem. 50, 1094–1096 (1972)
McGlashan, M.L.: Chemical Thermodynamics, p. 90. Academic Press, London (1979)
Povey, M.J.W.: Ultrasonic Techniques for Fluids Characterization, p. 26. Academic Press, London (1997)
Hedwig, G.R., Høiland, H.: The partial molar isothermal compressions of the nucleosides adenosine, cytidine, and uridine in aqueous solution at T = (288.15 and 313.15) K. J. Solution Chem. 46, 849–861 (2017)
Stimson, H.F.: Heat units and temperature scales for calorimetry. Am. J. Phys. 23, 614–622 (1955)
Dyke, B.D., Hedwig, G.R.: The partial molar volumes at T = (288.15 to 313.15) K, and the partial molar heat capacities and expansions at T = 298.15 K of cytidine, uridine, and adenosine in aqueous solution. J. Chem. Thermodyn. 40, 957–965 (2008)
Del Grosso, V.A., Mader, C.W.: Speed of sound in pure water. J. Acoust. Soc. Am. 52, 1442–1446 (1972)
Kell, G.S.: Precise representation of volume properties of water at one atmosphere. J. Chem. Eng. Data 12, 66–69 (1967)
Kell, G.S.: Density, thermal expansivity, and compressibility of liquid water from 0 to 150 °C: correlations and tables for atmospheric pressure and saturation reviewed and expressed on 1968 temperature scale. J. Chem. Eng. Data 20, 97–105 (1975)
Bevington, P.R.: Data Reduction and Error Analysis for the Physical Sciences. McGraw-Hill, New York (1969)
Hedwig, G.R., Jameson, G.B., Høiland, H.: Volumetric properties of the nucleoside thymidine in aqueous solution at T = 298.15 K and p = (10 to 100) MPa. J. Solution Chem. 43, 804–820 (2014)
Chen, C.-T., Millero, F.J.: Reevaluation of Wilson’s sound-speed measurements for pure water. J. Acoust. Soc. Am. 60, 1270–1273 (1976)
Hedwig, G.R., Høiland, H.: Thermodynamic properties of peptide solutions 20. Partial molar volumes and isothermal compressions for some tripeptides of sequence gly-X-gly (X = gly, ala, leu, asn, thr, and tyr) in aqueous solution at T = 298.15 K and p = (10–120) MPa. J. Chem. Thermodyn. 99, 30–39 (2016)
Wagner, W., Pruss, A.: The IAPWS formulation 1995 for the thermodynamic properties of ordinary water substance for general and scientific use. J. Phys. Chem. Ref. Data 31, 387–535 (2002)
Chen, C.-T., Fine, R.A., Millero, F.J.: The equation of state of pure water determined from sound speeds. J. Chem. Phys. 66, 2142–2144 (1977)
Hedwig, G.R.: Thermodynamic properties of peptide solutions 3. Partial molar volumes and partial molar heat capacities of some tripeptides in aqueous solution. J. Solution Chem. 17, 383–397 (1988)
Harned, H.S., Owen, B.B.: The Physical Chemistry of Electrolyte Solutions, 3rd edn. Reinhold, New York (1958)
Hedwig, G.R., Høiland, H.: Thermodynamic properties of peptide solutions: 7. Partial molar isentropic pressure coefficients of some dipeptides in aqueous solution. J. Solution Chem. 20, 1113–1127 (1991)
Lo Surdo, A., Shin, C., Millero, F.J.: The apparent molal volume and adiabatic compressibility of some organic solutes in water at 25 °C. J. Chem. Eng. Data 23, 197–201 (1978)
Sakurai, M., Nakamura, K., Nitta, K., Takenaka, N.: Sound velocities and apparent molar adiabatic compressions of alcohols in dilute aqueous solutions. J. Chem. Eng. Data 40, 301–310 (1995)
Chalikian, T.V., Sarvazyan, A.P., Funck, T., Breslauer, K.J.: Partial molar volumes, expansibilities, and compressibilities of oligoglycines in aqueous solutions at 18–55 °C. Biopolymers 34, 541–553 (1994)
Kharakoz, D.P.: Volumetric properties of proteins and their analogues in diluted water solutions. 2. Partial adiabatic compressibilities of amino acids at 15–70 °C. J. Phys. Chem. 95, 5634–5642 (1991)
Millero, F.J., Lo Surdo, A., Shin, C.: The apparent molal volumes and adiabatic compressibilities of aqueous amino acids at 25 °C. J. Phys. Chem. 82, 784–792 (1978)
Taulier, N., Chalikian, T.V.: Compressibility of protein transitions. Biochim. Biophys. Acta 1595, 48–70 (2002)
Lee, A., Chalikian, T.V.: Volumetric characterization of the hydration properties of heterocyclic bases and nucleosides. Biophys. Chem. 92, 209–227 (2001)
Buckin, V.A., Kankiya, B.I., Kazaryan, R.L.: Hydration of nucleosides in dilute aqueous solutions. Ultrasonic velocity and density measurements. Biophys. Chem. 34, 211–223 (1989)
Hedwig, G.R., Høiland, H.: Partial molar isentropic and isothermal compressions of the nucleosides adenosine, cytidine, and uridine in aqueous solution at 298.15 K. J. Chem. Eng. Data 56, 2266–2272 (2011)
Acknowledgements
We thank Einar Hogseth for his technical expertise in the design and maintenance of the speed of sound equipment for measurements at high pressures. Two of us (G.R.H. and G.B.J.) are grateful for financial assistance from the Marsden Fund (Contract No. 09-MAU-140).
Author information
Authors and Affiliations
Corresponding author
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Hedwig, G.R., Jameson, G.B. & Høiland, H. Volumetric Properties of the Nucleosides Adenosine, Cytidine, and Uridine in Aqueous Solution at T = (288.15 and 313.15) K and p = (10 to 100) MPa. J Solution Chem 48, 180–199 (2019). https://doi.org/10.1007/s10953-019-00856-4
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10953-019-00856-4