Abstract
The sand cat, Felis margarita Loche, 1858, is a small desert cat with a fragmented distribution across the Sahara, Arabian Peninsula, and Central Asia. It is currently listed as Least Concern by the IUCN; however, its status in many countries is unknown. Sand cats are generally classified into four subspecies: F. m. margarita (North Africa and Sahara), F. m. harrisoni (Arabia), F. m. thinobia (Central Asia), and F. m. scheffeli (Pakistan). The aim of this study was to determine the validity of these subspecies using genetic analysis. Sequences from the mitochondrial control region, mitochondrial NADH subunit 5, and cytochrome b genes (643 bp) were generated in a sample set of 47 animals of known geographical origin, from across the sand cat’s range over the past 100 years. The results of the analysis suggest some degree of genetic differentiation between the African populations (F. m. margarita) and those of Arabian or Central Asian origin, which merits further investigation with nuclear loci and further sampling of intermediate geographical locations. There is little genetic justification for differentiation of the other proposed subspecies (F. m. harrisoni, F. m. thinobia, and F. m. scheffeli), which differ only by 1–3 bp mutations in their haplotypes. The genetic diversity of a set of 86 captive sand cat samples is also generated and compared to facilitate future conservation management of the species in captivity.
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References
Abbadi M (1989) Radiotelemetric observations on sand cats (Felis margarita) in the Aravah Valley. Isr J Zool 36: 155–156
Ahmed S, Al Zaabi R, Soorae P, Shah JN, Al Hammadi E, Pusey R, Al Dhaheri S (2016) Rediscovering the Arabian sand cat (Felis margarita harrisoni) after a gap of 10 years using camera traps in the western region of Abu Dhabi, United Arab Emirates. Eur J Wildlife Res 62:627–631
Austerlitz F, Jung-Muller B, Godelle B, Gouyon PH (1997) Evolution of coalescence times, genetic diversity and structure during colonization. Theor Popul Biol 51:148–164
Baker RJ, Bradley RD (2006) Speciation in mammals and the genetic species concept. J Mammal 87:643–662
Banfield LM, al Qahtani H, Mallon D (2014) Arabian Sand Cat Felis margarita harrisoni Status Review and Conservation Strategy. Al Ain Zoo, Al Ain
Barros T, Gaubert P, Rocha RG, Bandeira V, Souto L, Mira A, Carlos F (2016) Mitochondrial demographic history of Egyptian mongoose (Herpestes ichneumon), an expanding carnivore in the Iberian Peninsula. Mammal Biol 81:176–184
Breton G (2017) International Studbook for the Sand Cat (Felis margarita). Volume XXIII
Breton G, Sliwa A, Azizi S, Essalhi A (2016) Sand cats in the Moroccan Sahara, preliminary results of a new study. Cat News 63:7–10
Charruau P, Fernandes C, Orozco-terWengel P, Peters J, Hunter L, Ziaie H, Jourabchian A, Jowkar H, Schaller G, Ostrowski S, Vercammen P, Grange T, Schlötterer C, Kotze A, Geigl EM, Walzer C, Burger PA (2011) Phylogeography, genetic structure and population divergence time of cheetahs in Africa and Asia: evidence for long-term geographic isolates. Mol Ecol 20:706–724
Cronin MA, Cánovas A, Bannasch DL, Oberbauer AM, Medrano JF (2015) Wolf subspecies: reply to Weckworth et al. and Fredrickson et al. J Hered 106: 417–419
Driscoll CA, Menotti-Raymond M, Roca AL, Hupe K, Johnson WE, Geffen E, Harley EH, Delibes M, Pontier D, Kitchener AC, Yamaguchi N, O’Brien SJ, Macdonald DW (2007) The Near Eastern origin of cat domestication. Science 317: 519–523
Excoffier L, Lischer HE (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and windows. Mol Ecol Resour 10:564–567
Excoffier L, Foll M, Petit RJ (2009) Genetic consequences of range expansions. Annu Rev Ecol Evol Syst 40:481–501
Frankham R, Ballou JD, Dudash MR, Eldridge MDB, Fenster CB, Lacy RC, Mendelson III JR, Porton IJ, Ralls K, Ryder OA (2012) Implications of different species concepts for conserving biodiversity. Biol Cons 153:25–31
Frankham R, Ballou JD, Eldridge MDB, Lacy RC, Ralls K, Dudash MR, Fenster CB (2011) Predicting the probability of outbreeding depression. Conserv Biol 25: 465–475
Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915–925
Haig SM, Beever EA, Chambers SM, Draheim HM, Dugger BD, Dunham S, Elliott-Smith E, Fontaine JB, Kesler DC, Knaus BJ, Lopes IF, Loschl P, Mullins TD, Sheffield LM (2006) Taxonomic considerations in listing subspecies under the U.S. endangered species act. Conserv Biol 20:1584–1594
Harrison DL, Bates PJJ (1991) The Mammals of Arabia (2nd ed.). Harrison Zoological Museum Publication, Sevenoaks
Hasegawa M, Lida Y, Yano T, Takaiwa F, Iwabuchi M (1985) Phylogenetic relationships among eukaryotic kingdoms inferred from ribosomal RNA sequences. J Mol Evol 22:32–38
Hemmer H (1974a) Studies of the systematics and biology of the sand cat. Kölner Zoo 17:11–20
Hemmer H (1974b) Felis margarita scheffeli new subspecies a new sand cat subspecies from the Nushki Desert Pakistan Mammalia Carnivora Felidae. Senckenb Biol 55:29–34
Hemmer H, Grubb P, Groves CP (1976) Notes on the sand cat, Felis margarita Loche, 1858. Z Säugetierk 41: 286–303
Heptner VH, Sludskii AA (1972) Mammals of the Soviet Union. Volume II Part 2. Carnivore (Hyenas and Cats). Vysshaya Shkola, Moscow. English Translation 1992, E.J. Brill, Leiden
Höhna S, Heath TA, Boussau B, Landis MJ, Ronquist F, Huelsenbeck JP (2014) Probabilistic graphical model representation in phylogenetics. Syst Biol 63:753–771
Höhna S, Landis MJ, Heath TA, Boussau B, Lartillot N, Moore BR, Huelsenbeck JP, Ronquist F (2016) RevBayes: Bayesian phylogenetic inference using graphical models and an interactive model-specification language. Syst Biol 65:726–736
Johnson WE, Eizirik E, Pecon-Slattery J, Murphy WJ, Antunes A, Teeling E, O’Brien SJ (2006) The late Miocene radiation of modern Felidae: a genetic assessment. Science 311:73–77
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A (2012) Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:1647–1649
Kitchener AC, Breitenmoser-Wursten CH, Eizirik E, Gentry A, Werdelin L, Wilting A, Yamaguchi N, Abramov AV, Christiansen P, Driscoll C, Duckworth JW, Johnson W, Luo SJ, Meijaard E, O’Donoghue P, Sanderson J, Seymour K, Bruford M, Groves C, Hoffmann M, Nowell K, Timmons Z, Tobe S (2017) A revised taxonomy of the Felidae. The final report of the Cat Classification Task Force of the IUCN/SSC Cat Specialist Group. Cat News Special Issue 11:1–80
Koepfli KP, Pollinger J, Godinho R, Robinson J, Lea A, Hendricks S, Schweizer RM, Thalmann O, Silva P, Fan Z, Yurchenko AA, Dobrynin P, Makunin A, Cahill JA, Shapiro B, Álvares F, Brito JC, Geffen E, Leonard JA, Helgen KM, Johnson WE, O'Brien SJ, Van Valkenburgh B, Wayne RK (2015) Genome-wide evidence reveals that African and Eurasian golden jackals are distinct species. Curr Biol 25:2158–2165
Li G, Davis BW, Eizirik E, Murphy WJ (2016) Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae). Genome Res 26(1):1–11
Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451–1452
Loche V (1858) Description d'une nouvelle espèce de Chat par M. le Capitaine Loche. Revue et Magasin de Zoologie Pure et Appliquée 2:49–51
Mohammad KM, Lahony SR, Al-Rammahi HM (2013) First record of the sand cat, Felis margarita Loche, 1858 (Mammalia: Carnivora, Felidae) from Iraq. Zool Middle East 59:358-359ig
Nowell K, Jackson P (1996) Wild Cats: Status Survey and Conservation Plan. International Union for Conservation of Nature and Natural Resources, Gland
Ognev SI (1926) A new genus and species of cat from the Transcaspian region. Annals of the Museum of Zoology, Academy of Science, USSR 27: 356–362
Pocock RI (1938a) The Algerian sand cat (Felis margarita Loche). Proc Zool Soc Lond B108: 41–46
Pocock RI (1938b) A new race of the sand cat (Felis margarita). Ann Mag Nat Hist Series 11 1:472–476
Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817–818
Rabeil T, Wacher T, Newby J (2016) Sand cat sightings in Niger and Chad. Cat News 63:11–14
Sausman KA (1997) Sand cat, Felis margarita, a true desert species. Internatl Zoo Yearbk 35:78–81
Schauenberg P (1974) Données nouvelles sur le chat des sables Felis margarita Loche, 1858. Revue suisse Zool 81:949–969
Sliwa A (2013) Felis margarita Loche. In: Kingdon JS, Happold D, Butynski T, Hoffmann M, Happold M, Kalina J (eds) The Mammals of Africa. Volumes 1–6. Academic Press, Amsterdam, pp 199–202
Sliwa A, Ghadirian T, Appel A, Banfield L, Sher Shah M, Wacher T (2016) Felis margarita. The IUCN Red List of Threatened Species 2016: e.T8541A50651884
Sunquist M, Sunquist F (2002) Wildcats of the World. University of Chicago Press, London
Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585–595
Witzenberger KA, Hochkirch A (2013) Evaluating ex situ conservation projects: genetic structure of the captive population of the Arabian sand cat. Mammal Biol 78:379–382
Acknowledgments
We thank Katrin Krohmann at the Senckenberg Forschungsinstitut and Malcolm Pearch at the Harrison Institute for their help in providing us with access to their collections samples. We also thank staff at Al Wabra Wildlife Preservation, Breeding Centre for Endangered Arabian Wildlife, Bahrain Zoo, Colchester Zoo, Ebeltoft Zoo, Krakow Zoo, Le Parc des Felins (Nesles), London Zoo, Novosibirsk Zoo, Osnabrück Zoo, SOS Care (USA), Twycross Zoo, and Wuppertal Zoo for provision of samples to the authors of this manuscript.
Funding
This work was funded by Al Ain Zoo and the Royal Zoological Society of Scotland. JCB is supported by Fundação para a Ciência e Tecnologia (contract IF/459/2013).
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Project conception, management and design: HS, LB, AK,; Writing: JHM, HS, AK, LB; Analysis: JHM, HS; Wet Lab Analysis: JHM and MG; Sample collection/fieldwork: AT, AA, MQ, JCB, SA, GB, AS, KW Critical Review: ALL.
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Howard-McCombe, J., Banfield, L., Kitchener, A.C. et al. A Mitochondrial Phylogeny of the Sand Cat (Felis margarita Loche, 1858). J Mammal Evol 27, 525–534 (2020). https://doi.org/10.1007/s10914-019-09473-w
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DOI: https://doi.org/10.1007/s10914-019-09473-w