Abstract
A new highly fluorescent difluoroboradipyrromethene (BODIPY) dye (4) bearing an phthalonitrile group at meso-position of the chromophoric core has been synthesized starting from 4-(4-meso-dipyrromethene-phenoxy)phthalonitrile (3) which was prepared by the oxidation of 4-(2-meso-dipyrromethane-phenoxy)phthalonitrile (2). The structural, electronic and photophysical properties of the prepared dye molecule were investigated. The final product exhibit noticeable spectroscopic properties which were examined by its absorption and fluorescence spectra. The original compounds prepared in the reaction pathway were characterized by the combination of FT-IR, 1H and 13C NMR, UV–vis and MS spectral data. It has been calculated; molecular structure, vibrational frequencies, 1H and 13C NMR chemical shifts and HOMO and LUMO energies of the title compound by using B3LYP method with 6-311++G(dp) basis set, as well. The final product (4) was obtained as single crystal which crystallized in the triclinic space group P-1 with a = 9.0490 (8) Å, b = 10.5555 (9) Å, c = 11.7650 (9) Å, α = 77.024 (6)°, β = 74.437 (6)°, γ = 65.211 (6)° and Z = 2. The crystal structure has intermolecular C—H···F weak hydrogen bonds. The singlet oxygen generation ability of the dye (4) was also investigated in different solvents to determine of using in photodynamic therapy (PDT).
Similar content being viewed by others
References
Karolin J, Johansson LBA, Strandberg L, Ny T (1994) Fluorescence and absorption spectroscopic properties of dipyrrometheneboron difluoride (BODIPY) derivatives in liquids, lipid membranes, and proteins. J Am Chem Soc 116:7801
Yee M, Fas SC, Stohlmeyer M, Wandless TJ, Cimprich KA (2005) A cell-permeable, activity-based probe for protein and lipid kinases. J Biol Chem 280:29053–29059
Ulrich G, Goze C, Guardigli M, Roda A, Ziessel R (2005) Pyrromethene dialkynyl borane complexes for “Cascatelle” energy transfer and protein labeling. Angew Chem Int Ed 44:3694–3698
Lim SH, Thivierge C, Nowak-Sliwinska P, Han J, Van Den Bergh H, Wagniares G, Burgess K, Lee HB (2010) In vitro and ın vivo photocytotoxicity of boron dipyrromethene derivatives for photodynamic therapy. J Med Chem 53:2865
Moon SY, Cha NR, Kim YH, Chang S (2004) New Hg2 + −selective chromo- and fluoroionophore based upon 8-hydroxyquinoline. J Org Chem 69:181–183
Golovkova TA, Kozlov DV, Neckers DC (2005) Synthesis and properties of novel fluorescent switches. J Org Chem 70:5545
McCusker C, Carroll JB, Rotello VM (2005) Cationic polyhedral oligomeric silsesquioxane (POSS) units as carriers for drug delivery processes. Chem Commun 996
Haughland RP (2005) The handbook, a guide to fluorescent probes and labeling technologies. Invitrogen Corp, Eugene
Arbeloa FL, Bañuelos J, Martínez V, Arbeloa T, Arbeloa IL (2005) Structural, photophysical and lasing properties of pyrromethene dyes. Int Rev Phys Chem 24:339–374
Thoresen LH, Kim H, Welch MB, Burghart A, Burgess K (1998) Synthesis of 3,5-Diaryl-4,4-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY®) dyes. Synlett 11:1276
Ulrich G, Goze C, Charbonnière L, Ziessel R (2003) Cation sensors based on terpyridine-functionalized boradiazaindacene. Chem Eur J 9:3748
Bura T, Ziessel R (2011) Absorption tuning of monosubstituted triazatruxenes for bulk heterojunction solar cells. Org Lett 13:6030–6033
Galangau O, Dumas-Verdes C, Méallet-Renault R, Clavier G (2010) Rational design of visible and NIR distyryl-BODIPY dyes from a novel fluorinated platform. Org Biomol Chem 8:4546–4553
Loudet A, Burgess K (2007) BODIPY dyes and their derivatives: syntheses and spectroscopic properties. Chem Rev 107:4891–4932
Perrin DD, Armarego WLF, Perrin DR (1985) Purification of laboratory chemicals, 2nd edn. Pergamon Press, New York
Young JG, Onnebuagu WJ (1990) Synthesis and characterization of di-disubstituted phthalocyanines. Org Chem 55:2155
Becke AD (1993) J Chem Phys 98:5648
Lee C, Yang W, Parr RG (1988) Phys Rev B 37:785
Gaussian 09, Revision A.1, Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA, Nakatsuji H, Caricato M, Li X, Hratchian HP, Izmaylov AF, Bloino J, Zheng G, Sonnenberg JL, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Vreven T, Montgomery JA, Peralta JE, Ogliaro F, Bearpark M, Heyd JJ, Brothers E, Kudin KN, Staroverov VN, Kobayashi R, Normand J, Raghavachari K, Rendell A, Burant JC, Iyengar SS, Tomasi J, Cossi M, Rega N, Millam JM, Klene M, Knox JE, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Martin RL, Morokuma K, Zakrzewski VG, Voth GA, Salvador P, Dannenberg JJ, Dapprich S, Daniels AD, Farkas O, Foresman J B, Ortiz JV, Cioslowski J, Fox DJ, Gaussian, Inc., Wallingford CT (2009)
Dennington R, Keith T, Millam J (2009) GaussView, Version 5. Semichem Inc., Shawnee Mission
Tamer Ö, Avcı D, Atalay Y (2015) Spectrochim Acta 136:644–650
Stoe & Cie (2002) X-AREA (Version 1.18). Stoe & Cie, Darmstadt
Stoe & Cie (2002) X-RED32 (Version 1.04). Stoe & Cie, Darmstadt
Sheldrick GM (2008) A short history of SHELX. Acta Crystallogr A 64:112–122
Farrugia LJ (2012) WinGX and ORTEP for Windows: an update. J Appl Crystallogr 45:849–854
Burnett MN, Johnson CK (1996) ORTEP-III. Report ORNL-6895. Oak Ridge National Laboratory, Tennessee
Farrugia LJ (1999) WinGX suite for small-molecule single-crystal crystallography. J Appl Crystallogr 32:837
Spek AL (2009) Structure validation in chemical crystallography. Acta Crystallogr D 65:148–155
Rao PD, Dhanalekshmi S, Littler BJ, Lindsey JSJ (2000) Rational syntheses of porphyrins bearing up to four different meso substituents. Org Chem 65:7323
Sen P, Yıldız SZ, Atalay Y, Dege N, Demirtaş G (2014) The synthesis, characterization, crystal structure and theoretical calculations of a new meso-BOBIPY substituted phthalonitrile. J Lumin 149:297–305
Roacho RL, Metta-Magaña AJ, Peña-Cabrera E, Pannell KH (2013) Synthesis, structural characterization, and spectroscopic properties of the ortho, meta, and para isomers of 8-(HOCH2-C6H4)-BODIPY and 8-(MeOC6H4)-BODIPY. J Phys Org Chem 26:345
Akbal T, Akdemir N, Ozil M, Agar E, Erdonmez A (2005) 4,5-Bis(3-methoxyphenylsulfanyl)phthalonitrile. Acta Crystallogr E 61:1121–1122
Dinçer M, Agar A, Akdemir N, Ağar E, Özdemir N (2004) 4-(Benzyloxy)phthalonitrile. Acta Crystallogr E 60:79–80
Tereci H, Askeroğlu I, Akdemir N, Uçar I, Büyükgüngör O (2012) Combined experimental and theoretical approaches to the molecular structure of 4-(1-formylnaphthalen-2-yloxy)phthalonitrile. Spectrochim Acta A Mol Biomol Spectrosc 96:569–577
Zhang X-F, Jia D, Song A, Liu Q (2008) 3-(2-Nitrophenoxy)phthalonitrile. Acta Crystallogr E 64:356
İskeleli NO (2007) 4-(m-Tolyloxy)phthalonitrile. Acta Crystallogr E 63:997–998
Tanak H, Köysal Y, Işık Ş, Yaman H, Ahsen V (2011) Experimental and computational approaches to the molecular structure of 3-(2-Mercaptopyridine)phthalonitrile bull. Korean Chem Soc 32:673–680
Köysal Y, Işık Ş, Akdemir N, Ağar E, McKee V (2003) 4-(8-Quinolinoxy)phthalonitrile. Acta Crystallogr E 59:1423–1424
Işık Ş, Köysal Y (2006) 4-(4-Heptyloxyphenoxy)phthalonitrile. Acta Crystallogr E 62:671–672
Öner N, Tamer Ö, Avcı D, Atalay Y (2014) Spectrochim Acta 133:542–549
Yaşa G, Erdoğmus A, Uğur AL, Şener MK, Avciata U, Nyokong T (2012) Photophysical and photochemical properties of novel phthalocyanines bearing non-peripherally substituted mercaptoquinoline moiety. J Porphyr Phthalocyanine 16845–16854
Coskun A, Akkaya EU (2004) Difluorobora-s-diazaindacene dyes as highly selective dosimetric reagents for fluoride anions. Tetrahedron Lett 45:4947
Acknowledgments
This work was supported by Ministry of Science, Industry and Technology of Turkey (SANTEZ project no. 0182.STZ.2013-1) and Research Fund of Sakarya University (project no. 2014-02-04 007).
Author information
Authors and Affiliations
Corresponding author
Electronic supplementary material
Below is the link to the electronic supplementary material.
ESM 1
(DOCX 239 kb)
Rights and permissions
About this article
Cite this article
Sen, P., Atmaca, G.Y., Erdoğmuş, A. et al. The Synthesis, Characterization, Crystal Structure and Photophysical Properties of a New Meso-BODIPY Substituted Phthalonitrile. J Fluoresc 25, 1225–1234 (2015). https://doi.org/10.1007/s10895-015-1609-y
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10895-015-1609-y