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The Synthesis, Characterization, Crystal Structure and Photophysical Properties of a New Meso-BODIPY Substituted Phthalonitrile

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Abstract

A new highly fluorescent difluoroboradipyrromethene (BODIPY) dye (4) bearing an phthalonitrile group at meso-position of the chromophoric core has been synthesized starting from 4-(4-meso-dipyrromethene-phenoxy)phthalonitrile (3) which was prepared by the oxidation of 4-(2-meso-dipyrromethane-phenoxy)phthalonitrile (2). The structural, electronic and photophysical properties of the prepared dye molecule were investigated. The final product exhibit noticeable spectroscopic properties which were examined by its absorption and fluorescence spectra. The original compounds prepared in the reaction pathway were characterized by the combination of FT-IR, 1H and 13C NMR, UV–vis and MS spectral data. It has been calculated; molecular structure, vibrational frequencies, 1H and 13C NMR chemical shifts and HOMO and LUMO energies of the title compound by using B3LYP method with 6-311++G(dp) basis set, as well. The final product (4) was obtained as single crystal which crystallized in the triclinic space group P-1 with a = 9.0490 (8) Å, b = 10.5555 (9) Å, c = 11.7650 (9) Å, α = 77.024 (6)°, β = 74.437 (6)°, γ = 65.211 (6)° and Z = 2. The crystal structure has intermolecular C—H···F weak hydrogen bonds. The singlet oxygen generation ability of the dye (4) was also investigated in different solvents to determine of using in photodynamic therapy (PDT).

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References

  1. Karolin J, Johansson LBA, Strandberg L, Ny T (1994) Fluorescence and absorption spectroscopic properties of dipyrrometheneboron difluoride (BODIPY) derivatives in liquids, lipid membranes, and proteins. J Am Chem Soc 116:7801

    Article  CAS  Google Scholar 

  2. Yee M, Fas SC, Stohlmeyer M, Wandless TJ, Cimprich KA (2005) A cell-permeable, activity-based probe for protein and lipid kinases. J Biol Chem 280:29053–29059

    Article  CAS  PubMed  Google Scholar 

  3. Ulrich G, Goze C, Guardigli M, Roda A, Ziessel R (2005) Pyrromethene dialkynyl borane complexes for “Cascatelle” energy transfer and protein labeling. Angew Chem Int Ed 44:3694–3698

    Article  CAS  Google Scholar 

  4. Lim SH, Thivierge C, Nowak-Sliwinska P, Han J, Van Den Bergh H, Wagniares G, Burgess K, Lee HB (2010) In vitro and ın vivo photocytotoxicity of boron dipyrromethene derivatives for photodynamic therapy. J Med Chem 53:2865

    Article  CAS  PubMed  Google Scholar 

  5. Moon SY, Cha NR, Kim YH, Chang S (2004) New Hg2 + −selective chromo- and fluoroionophore based upon 8-hydroxyquinoline. J Org Chem 69:181–183

    Article  CAS  PubMed  Google Scholar 

  6. Golovkova TA, Kozlov DV, Neckers DC (2005) Synthesis and properties of novel fluorescent switches. J Org Chem 70:5545

    Article  CAS  PubMed  Google Scholar 

  7. McCusker C, Carroll JB, Rotello VM (2005) Cationic polyhedral oligomeric silsesquioxane (POSS) units as carriers for drug delivery processes. Chem Commun 996

  8. Haughland RP (2005) The handbook, a guide to fluorescent probes and labeling technologies. Invitrogen Corp, Eugene

    Google Scholar 

  9. Arbeloa FL, Bañuelos J, Martínez V, Arbeloa T, Arbeloa IL (2005) Structural, photophysical and lasing properties of pyrromethene dyes. Int Rev Phys Chem 24:339–374

    Article  Google Scholar 

  10. Thoresen LH, Kim H, Welch MB, Burghart A, Burgess K (1998) Synthesis of 3,5-Diaryl-4,4-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY®) dyes. Synlett 11:1276

    Article  Google Scholar 

  11. Ulrich G, Goze C, Charbonnière L, Ziessel R (2003) Cation sensors based on terpyridine-functionalized boradiazaindacene. Chem Eur J 9:3748

    Article  PubMed  Google Scholar 

  12. Bura T, Ziessel R (2011) Absorption tuning of monosubstituted triazatruxenes for bulk heterojunction solar cells. Org Lett 13:6030–6033

    Article  CAS  PubMed  Google Scholar 

  13. Galangau O, Dumas-Verdes C, Méallet-Renault R, Clavier G (2010) Rational design of visible and NIR distyryl-BODIPY dyes from a novel fluorinated platform. Org Biomol Chem 8:4546–4553

    Article  CAS  PubMed  Google Scholar 

  14. Loudet A, Burgess K (2007) BODIPY dyes and their derivatives: syntheses and spectroscopic properties. Chem Rev 107:4891–4932

    Article  CAS  PubMed  Google Scholar 

  15. Perrin DD, Armarego WLF, Perrin DR (1985) Purification of laboratory chemicals, 2nd edn. Pergamon Press, New York

    Google Scholar 

  16. Young JG, Onnebuagu WJ (1990) Synthesis and characterization of di-disubstituted phthalocyanines. Org Chem 55:2155

    Article  CAS  Google Scholar 

  17. Becke AD (1993) J Chem Phys 98:5648

    Article  CAS  Google Scholar 

  18. Lee C, Yang W, Parr RG (1988) Phys Rev B 37:785

    Article  CAS  Google Scholar 

  19. Gaussian 09, Revision A.1, Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA, Nakatsuji H, Caricato M, Li X, Hratchian HP, Izmaylov AF, Bloino J, Zheng G, Sonnenberg JL, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Vreven T, Montgomery JA, Peralta JE, Ogliaro F, Bearpark M, Heyd JJ, Brothers E, Kudin KN, Staroverov VN, Kobayashi R, Normand J, Raghavachari K, Rendell A, Burant JC, Iyengar SS, Tomasi J, Cossi M, Rega N, Millam JM, Klene M, Knox JE, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Martin RL, Morokuma K, Zakrzewski VG, Voth GA, Salvador P, Dannenberg JJ, Dapprich S, Daniels AD, Farkas O, Foresman J B, Ortiz JV, Cioslowski J, Fox DJ, Gaussian, Inc., Wallingford CT (2009)

  20. Dennington R, Keith T, Millam J (2009) GaussView, Version 5. Semichem Inc., Shawnee Mission

    Google Scholar 

  21. Tamer Ö, Avcı D, Atalay Y (2015) Spectrochim Acta 136:644–650

    Article  CAS  Google Scholar 

  22. Stoe & Cie (2002) X-AREA (Version 1.18). Stoe & Cie, Darmstadt

    Google Scholar 

  23. Stoe & Cie (2002) X-RED32 (Version 1.04). Stoe & Cie, Darmstadt

    Google Scholar 

  24. Sheldrick GM (2008) A short history of SHELX. Acta Crystallogr A 64:112–122

    Article  CAS  PubMed  Google Scholar 

  25. Farrugia LJ (2012) WinGX and ORTEP for Windows: an update. J Appl Crystallogr 45:849–854

    Article  CAS  Google Scholar 

  26. Burnett MN, Johnson CK (1996) ORTEP-III. Report ORNL-6895. Oak Ridge National Laboratory, Tennessee

    Google Scholar 

  27. Farrugia LJ (1999) WinGX suite for small-molecule single-crystal crystallography. J Appl Crystallogr 32:837

    Article  CAS  Google Scholar 

  28. Spek AL (2009) Structure validation in chemical crystallography. Acta Crystallogr D 65:148–155

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  29. Rao PD, Dhanalekshmi S, Littler BJ, Lindsey JSJ (2000) Rational syntheses of porphyrins bearing up to four different meso substituents. Org Chem 65:7323

    Article  CAS  Google Scholar 

  30. Sen P, Yıldız SZ, Atalay Y, Dege N, Demirtaş G (2014) The synthesis, characterization, crystal structure and theoretical calculations of a new meso-BOBIPY substituted phthalonitrile. J Lumin 149:297–305

    Article  CAS  Google Scholar 

  31. Roacho RL, Metta-Magaña AJ, Peña-Cabrera E, Pannell KH (2013) Synthesis, structural characterization, and spectroscopic properties of the ortho, meta, and para isomers of 8-(HOCH2-C6H4)-BODIPY and 8-(MeOC6H4)-BODIPY. J Phys Org Chem 26:345

    Article  CAS  Google Scholar 

  32. Akbal T, Akdemir N, Ozil M, Agar E, Erdonmez A (2005) 4,5-Bis(3-methoxyphenylsulfanyl)phthalonitrile. Acta Crystallogr E 61:1121–1122

    Article  Google Scholar 

  33. Dinçer M, Agar A, Akdemir N, Ağar E, Özdemir N (2004) 4-(Benzyloxy)phthalonitrile. Acta Crystallogr E 60:79–80

    Article  Google Scholar 

  34. Tereci H, Askeroğlu I, Akdemir N, Uçar I, Büyükgüngör O (2012) Combined experimental and theoretical approaches to the molecular structure of 4-(1-formylnaphthalen-2-yloxy)phthalonitrile. Spectrochim Acta A Mol Biomol Spectrosc 96:569–577

    Article  CAS  PubMed  Google Scholar 

  35. Zhang X-F, Jia D, Song A, Liu Q (2008) 3-(2-Nitrophenoxy)phthalonitrile. Acta Crystallogr E 64:356

    Article  Google Scholar 

  36. İskeleli NO (2007) 4-(m-Tolyloxy)phthalonitrile. Acta Crystallogr E 63:997–998

    Google Scholar 

  37. Tanak H, Köysal Y, Işık Ş, Yaman H, Ahsen V (2011) Experimental and computational approaches to the molecular structure of 3-(2-Mercaptopyridine)phthalonitrile bull. Korean Chem Soc 32:673–680

    Article  CAS  Google Scholar 

  38. Köysal Y, Işık Ş, Akdemir N, Ağar E, McKee V (2003) 4-(8-Quinolinoxy)phthalonitrile. Acta Crystallogr E 59:1423–1424

    Article  Google Scholar 

  39. Işık Ş, Köysal Y (2006) 4-(4-Heptyloxyphenoxy)phthalonitrile. Acta Crystallogr E 62:671–672

    Google Scholar 

  40. Öner N, Tamer Ö, Avcı D, Atalay Y (2014) Spectrochim Acta 133:542–549

    Article  Google Scholar 

  41. Yaşa G, Erdoğmus A, Uğur AL, Şener MK, Avciata U, Nyokong T (2012) Photophysical and photochemical properties of novel phthalocyanines bearing non-peripherally substituted mercaptoquinoline moiety. J Porphyr Phthalocyanine 16845–16854

  42. Coskun A, Akkaya EU (2004) Difluorobora-s-diazaindacene dyes as highly selective dosimetric reagents for fluoride anions. Tetrahedron Lett 45:4947

    Article  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by Ministry of Science, Industry and Technology of Turkey (SANTEZ project no. 0182.STZ.2013-1) and Research Fund of Sakarya University (project no. 2014-02-04 007).

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Correspondence to S. Zeki Yildiz.

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Sen, P., Atmaca, G.Y., Erdoğmuş, A. et al. The Synthesis, Characterization, Crystal Structure and Photophysical Properties of a New Meso-BODIPY Substituted Phthalonitrile. J Fluoresc 25, 1225–1234 (2015). https://doi.org/10.1007/s10895-015-1609-y

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  • DOI: https://doi.org/10.1007/s10895-015-1609-y

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