Patient’s Characteristics
A total of 162 patients were hospitalized with SARS-CoV-2 infection, 23 (14%) were admitted to the ICU and 12 (7.4%) died during hospital stay. After hospital discharge, 4 patients were lost to follow-up. Flow chart of patients is shown in Figure S-2. One hundred and four and 116 patients completed the SCQ at 2 and 6 months, respectively.
Baseline characteristics of the 146 included patients are shown in Table S-1. Median age was 64 years, 88 (60.3%) were male, and 72.6% had coexisting comorbid diseases. Clinical status on admission and therapy administered during hospital stay are detailed in Table S-1.
Clinical and Biological Outcomes
During follow-up, 30 patients (20%) were readmitted to hospital (Table S-2). The most frequent reasons for hospital readmission were underlying disease exacerbation (23 events in 13 patients, 8.9%), bacterial infection (12 in 5 patients, 3.4%), thrombohemorrhagic events (9 in 9, 6.1%), and persistent COVID-19 symptoms (8 in 6, 4.1%) patients. Eight (5.5%) patients died. Detailed information of causes of in-hospital and after discharge deaths are shown in Table S-2.
Persistent symptoms of moderate or severe intensity at the 2-month visit were observed in 9.6%, 7.4%, and 2.9% patients for general, gastrointestinal, and respiratory symptoms, respectively, and in 7.8%, 4.3%, and 1.0% patients, respectively, at the 6-month visit (Fig. 1).
Serum inflammatory biomarkers showed an initially steep and later flatter substantial decrease during follow-up, followed by stabilization or non-significant ulterior increase. The most prominent initial decrease was observed with C-reactive protein (CRP). Temporal changes in the levels of several biomarkers throughout the study period are shown in Fig. 1.
Virological Outcomes
SARS-CoV-2 RNA shedding lasted a median (Q1–Q3) of 13 (2.2–33.8) days in those with the last RT-PCR test negative (Table S-1), resulting in a proportion of patients who tested negative at 2-month and 6-month follow-up visits of 88% and 97%, respectively. Viral RNA shedding of low intensity was detected in some patients in subsequent nasopharyngeal tests beyond the acute phase of the disease. Thus, 40/146 (27%; median [Q1–Q3] Ct = 34 [31–37]), 15/127 (11.8%; median Ct = 38 [37.25–39]), and 4/134 (3.0%; median Ct = 36 [36–36]) individuals tested positive at month 1, 2, and 6 visits, respectively. SARS-CoV-2 RT-PCR results during follow-up are displayed in Fig. 2a. Although none of the four patients with positive SARS-CoV-2 RNA at month 6 met the CDC criteria for suspected reinfection [9], sequencing could be performed in three of them for whom paired stored samples were available. Patients’ age ranged from 44 to 73 years, two were men and two had subjacent comorbidities (breast cancer in remission in one patient and epilepsy and mental retardation in another). Two patients received immunomodulatory therapy (high-dose corticosteroids or interferon-β-1b) during COVID-19 hospital admission. The same clade 20B (lineage B.1.1) was present in all cases (see Figure S-3 for phylogenetic assignment of the samples and current notable variants). In two patients, the clade showed the same hallmark single nucleotide variants (individuals #88 and #95, Table S-3), and in the third patient, two new mutations were detected in the most recent sample (a K374R substitution in the N gene and an A222V substitution in the S gene), probably developed due to persistent infection.
Serological Outcomes
Median [Q1–Q3] time from illness onset to seropositivity was 12 (8–15) days. Peak S-IgG was significantly higher compared to N-IgG (median 5.9 vs. 4.1 absorbance/cut-off [S/CO]; p < 0.001, respectively) (Table S-1). Figure 2b shows S-IgG and N-IgG S/CO values of all determinations of the study patients over time.
Antibody titers gradually waned, and 29 (28.7%) patients became seronegative for either N-IgG or S-IgG during follow-up: 23 for N-IgG alone, 2 for S-IgG alone, and 4 for both N-IgG and S-IgG. The majority of cases of seroreversion were observed at the 6-month visit (25/29 [86.2%] patients).
Characterization and Predictors of Short-term Persistence of Symptoms
A significant number (76 [73%]) of patients scored any symptom-CSQ, being fatigue (54.8%), myalgia (30.8%), dyspnoea (26.9%), and cough (25%) the most frequent. The most frequent symptoms reported by patients with the highest CSQ scores were fatigue (12.5%), myalgia (7.6%), and dyspnoea (6.7%).
Table 1 shows the characteristics of the patients with the highest CSQ scores at 2 months. In the univariate analysis, they were more frequently active smokers (p = 0.013), had more frequently bilateral lung infiltrates (p = 0.015), exhibited at hospital admission lower baseline ferritin levels (p = 0.002), a trend to lower CRP (p = 0.055), and had received less frequently tocilizumab (p = 0.013) during the acute episode of COVID-19.
Table 1 Clinical, sero-virological variables and serum biomarkers according to the persistence of symptoms at 2 and 6 months after hospital admission for COVID-19 No differences were found between groups in the Ct values on admission (E-gene, 29.1 [26.5–32.8] vs. 29.7 [26.2–34.3]; p = 0.909), time to first negative RT-PCR results (8 vs. 13 days; P = 0.237), the proportion of individuals who tested positive beyond 1-month (19% vs. 35%; p = 0.174) and 2-month (7.4% vs. 16.8%; p = 0.375) visits (Table 1), and in the Ct values at 1-month (E-gene, 35 [33.0–36.0] vs. 36 [31.5–37.5]; p = 0.754) or 2-month (E-gene, 38.5 [38.2–38.8] vs. 38.0 [37.0–39.0]; p = 1.000) visits.
There was a weaker antibody response against SARS-CoV-2 in the highest CSQ scores group, consisting of a longer time to either S-IgG or N-IgG seroconversion from illness onset (median 16 vs. 11 days; p = 0.012), a flatter slope (+ 0.4 [0–0.5] vs. + 1.0 [0.5–3.2] change in S/CO per day; p < 0.001) until reaching peak levels, and lower peak S-IgG value (4.1 vs. 6.4 S/CO; p = 0.002) (Table 1 and Fig. 3). Accordingly, fewer patients within the highest CSQ scores showed seroconversion at 2 months for S-IgG and for N-IgG (55.6% vs. 86.7%; p = 0.002).
Receiver operating characteristic (ROC) curve analysis showed that a SARS-CoV-2 S-IgG value below 5.4 S/CO at 1-month post-discharge predicted the highest CSQ scores at 2 months with an AUC [CI 95%] of 0.66 [0.54–0.79] (Figure S-4).
A differential profile in the dynamics of CRP levels was observed according to group, with a trend to lower levels at baseline in individuals with highest CSQ scores, and subsequent inversion in the trend at 1-month and 2-month visits (Fig. 3 and Table 1). Baseline ferritin levels were higher in the group with highest CSQ scores. No differences were found in other inflammatory biomarkers among groups.
In the multivariate logistic regression analysis including age, sex, Charlson comorbidity index, WHO severity ordinal scale score, peak S-IgG values, testing positive for SARS-CoV-2 RT-PCR at 1-month visit and tocilizumab use, we found that a lower peak in SARS-CoV-2 S-IgG value (OR [95% CI] 0.80 [0.66–0.94]), and a higher WHO severity scale score (2.57 [1.20–5.86] per point increase) were independent predictors of the highest CSQ scores at 2 months after discharge (Fig. 4a). Sensitivity analyses with the outcomes median-CSQ score or any symptom-CSQ showed similar trends (Figure S-5a-b).
Characterization and Predictors of Long-term Persistence of Symptoms
One hundred and sixteen individuals, including 85 who also had completed the survey at 2 months, voluntarily agreed to fill out the CSQ at the 6-month visit. The most frequent symptoms reported by patients with the highest CSQ scores were fatigue (10.3%), myalgia (6.9%), dyspnoea (4.3%), cough (4.3%), and nasal congestion (4.3%).
Patients with the highest CSQ scores showed lower CRP levels on admission and a trend to lower peak S-IgG value (Table 1).
In the multivariate logistic regression analysis including the same variables as in 2-month visit, a lower peak in SARS-CoV-2 S-IgG (OR [95% CI] 0.89 [0.79–0.99]) and female sex (2.41 [1.20–4.82] were predictors of the highest CSQ scores at the 6-month visit (Fig. 4b). Sensitivity analyses with median-CSQ score and any symptom-CSQ showed similar trends (Figure S-5 c-d).