Abstract
The crystal structure of 2-iodokojic acid, (2-jodo-3-hydroxy-6-hydroxymethyl)-4-H-pyran-4-one) (C6H5IO4, Mr = 268.00) has been determined by single crystal X-ray diffraction analysis. The compound crystallizes in the orthorhombic crystal system with space group Pc21b and unit cell parameters: a = 4.0830(2), b = 15.3510(5), c = 23.517(1) Å and Z = 8. The final reliability index is 0.0288 for 2,584 observed reflections. The two molecules of iodokojic acid, slightly differing in their molecular structure, are localized in independent part of unit cell. The crystal packing is stabilized by O–H···O hydrogen bonds and I···O intermolecular interactions. The molecular structure of iodokojic acid determined experimentally little differs from that obtained by the applied theoretical (Hartree–Fock and four versions of DFT) methods, the differences should not be taken as a measure of the reliability of the theoretical methods.
Graphical Abstract
The crystal structure of 2-iodokojic acid, (2-jodo-3-hydroxy-6-hydroxymethyl)-4-H-pyran-4-one) (C6H5IO4, Mr = 268.00) has been determined by single crystal X-ray diffraction analysis. The two molecules of iodokojic acid, slightly differing in their molecular structure, are localized in independent part of unit cell. The crystal packing is stabilized by O–H···O hydrogen bonds and I···O intermolecular interactions. The molecular structure of iodokojic acid determined experimentally little differs from obtained by the applied theoretical (Hartree–Fock and four versions of DFT) methods, the differences should not be taken as a measure of the reliability of the theoretical methods.
Similar content being viewed by others
References
Usui K, Fujihira S, Baba N (2000) Meiji Daigaku Nogakubu Kenkyu Hokoku 121:15
Luo X, Liang Y (2000) Faming Zhuanli Shenquig Gongkai Shuomingshu CN 1,228,300
Okabe T, Suzuki M (2000) Jpn Kokai Tokkyo Koho JP 290:123
Avaux DR, Laugier JP (2000) Eur Pat Appl EP 1,027,878
Zecchino J, Knight EA, Castillo-Bucci C (2002) U.S. Patent 6,497,887
Chang SY, Kim JY, Kim JH, Yun SY (2004) U.S. Patent 6,689,344
Yoo DS, Lee J, Choi SS, Rho HS, Cho DH, Shin WC, Cho JY (2010) Pharmazie 65:261
Aytemir MD, Calis U (2010) Arch Pharm 343:173
Aytemir MD, Septioglu E, Calis U (2010) Arzneim-Forsch Drug Res 60:22
Noh JM, Kwak SY, Seo HS, Seo JH, Kim BG, Lee YS (2009) Bioorg Med Chem Lett 19:5586
Chang TS (2009) Int J Mol Sci 10:2440
Molenda JJ, Basinger MA, Hanusa TP, Jones MM (1994) J Inorg Biochem 55:131
Nurchi VM, Crisponi G, Lachowicz JI, Murgia S, Pivetta T, Remelli M, Rescigno A, Niclos-Gutierrez J, Gonzalez-Perez JM, Dominquez A, Gastineiras A, Szewczuk Z (2010) J Inorg Biochem 104:560
Zaremba K, Lasocha W, Adamski A, Stanek J, Pettek-Janczyk A (2007) J Coord Chem 60:1537
Uher M, Szymonska J, Korenova A, Tomasik P (2000) Monatsh Chem 131:301
Nonius (1998) COLLECT. Nonius BV, Delft
Otwinowski Z, Minor W (1997) In: Carter CW Jr, Sweet RM (eds) Macromolecular crystallography, part A, vol 276. Academic Press, New York, p 307
Sheldrick GM (1996) SADABS. University of Göttingen, Göttingen
Altomare A, Burla MC, Camalli M, Cascarano GL, Giacovazzo C, Guagliardi A, Moliterni AGG, Polidori R, Spagna R (1999) J Appl Crystallogr 32:115
Sheldrick GM (2008) Acta Crystallogr Sect A 64:112
Macrae CF, Edgington PR, McCabe P, Pidcock E, Shields GP, Taylor R, Towler M, van de Streek J (2006) J Appl Crystallogr 39:453
Baerends EJ, Autschbach J, Bérces A, Bo C, Boerrigter PM, Cavallo L, Chong DP, Deng L, Dickson RM, Ellis DE, Fan L, Fischer TH, Fonseca Guerra C, van Gisbergen SJA, Groeneveld JA, Gritsenko OV, Gruning M, Harris FE, Van den Hoek P (2006) J Chem Theory Comput 2:286
te Velde G, Bickelhaupt FM, Baerends EJ, Fonseca Guerra C, van Gisbergen SJA, Snijders JG, Ziegler T (2001) J Comput Chem 22:931
Becke AD (1988) Phys Rev A 38:3098
Perdew JP (1986) Phys Rev B 33:8822
Swart M, Snijders JG (2003) Theor Chem Acc 110:34
Proynov EI, Sirois S, Salahub DR (1997) Int J Quantum Chem 64:427
Lee C, Yang W, Parr RG (1988) Phys Rev B 37:785
Handy NC, Cohen AJ (2001) Mol Phys 99:403
Perdew JP, Burke K, Ernzerhof M (1996) Phys Rev Lett 77:3865
Muller P, Herbst-Irmer R, Spek AL, Schneider TR, Sawaya MR (2006) Crystal structure refinement. Oxford University Press, Oxford, p 201
McKinstry HA, Eiland PF, Repinsky R (1952) Acta Crystallogr 5:285
Lokaj J, Kozisek J, Koren B, Uher M, Vrabel V (1991) Acta Crystallogr Sect C 47:193
Yao GM, Wang YB, Wang LQ, Qin GW (2005) Acta Crystallogr Sect E 61:o1403
Hryniewicz K, Stadnicka K, Pettek-Janczyk A (2009) J Mol Struct 919:255
Lovell S, Subramony P, Kahr B (1999) J Am Chem Soc 121:7020
Dong CM, Pu SC, Gao WY (2008) Acta Crystallogr Sect E 64:o1032
Shaheen MA, Hartinger CG, Tahir MN, Shafiq AA, Keppler BK (2009) Acta Crystallogr Sect E 65:o437
Bernstein J, Davis RE, Shimoni L, Chang NL (1995) Angew Chem Int Ed Engl 34:1555
Acknowledgments
We thank Scientific Grant Agency of the Ministry of Education of Slovak Republic and the Slovak Academy of Sciences (Grants 1/4454/08 and 1/0562/10) and Ministry of Education of the Czech Republic (Project VZ0021627501).
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Šimo, F., Moncol, J., Šípoš, R. et al. The Molecular and Crystal Structures of 2-Iodokojic Acid: Experimental and Theoretical Determination. J Chem Crystallogr 41, 1093–1098 (2011). https://doi.org/10.1007/s10870-011-0051-5
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10870-011-0051-5