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The Molecular and Crystal Structures of 2-Iodokojic Acid: Experimental and Theoretical Determination

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Abstract

The crystal structure of 2-iodokojic acid, (2-jodo-3-hydroxy-6-hydroxymethyl)-4-H-pyran-4-one) (C6H5IO4, Mr = 268.00) has been determined by single crystal X-ray diffraction analysis. The compound crystallizes in the orthorhombic crystal system with space group Pc21b and unit cell parameters: a = 4.0830(2), b = 15.3510(5), c = 23.517(1) Å and Z = 8. The final reliability index is 0.0288 for 2,584 observed reflections. The two molecules of iodokojic acid, slightly differing in their molecular structure, are localized in independent part of unit cell. The crystal packing is stabilized by O–H···O hydrogen bonds and I···O intermolecular interactions. The molecular structure of iodokojic acid determined experimentally little differs from that obtained by the applied theoretical (Hartree–Fock and four versions of DFT) methods, the differences should not be taken as a measure of the reliability of the theoretical methods.

Graphical Abstract

The crystal structure of 2-iodokojic acid, (2-jodo-3-hydroxy-6-hydroxymethyl)-4-H-pyran-4-one) (C6H5IO4, Mr = 268.00) has been determined by single crystal X-ray diffraction analysis. The two molecules of iodokojic acid, slightly differing in their molecular structure, are localized in independent part of unit cell. The crystal packing is stabilized by O–H···O hydrogen bonds and I···O intermolecular interactions. The molecular structure of iodokojic acid determined experimentally little differs from obtained by the applied theoretical (Hartree–Fock and four versions of DFT) methods, the differences should not be taken as a measure of the reliability of the theoretical methods.

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References

  1. Usui K, Fujihira S, Baba N (2000) Meiji Daigaku Nogakubu Kenkyu Hokoku 121:15

    CAS  Google Scholar 

  2. Luo X, Liang Y (2000) Faming Zhuanli Shenquig Gongkai Shuomingshu CN 1,228,300

    Google Scholar 

  3. Okabe T, Suzuki M (2000) Jpn Kokai Tokkyo Koho JP 290:123

    Google Scholar 

  4. Avaux DR, Laugier JP (2000) Eur Pat Appl EP 1,027,878

  5. Zecchino J, Knight EA, Castillo-Bucci C (2002) U.S. Patent 6,497,887

    Google Scholar 

  6. Chang SY, Kim JY, Kim JH, Yun SY (2004) U.S. Patent 6,689,344

    Google Scholar 

  7. Yoo DS, Lee J, Choi SS, Rho HS, Cho DH, Shin WC, Cho JY (2010) Pharmazie 65:261

    CAS  Google Scholar 

  8. Aytemir MD, Calis U (2010) Arch Pharm 343:173

    Article  CAS  Google Scholar 

  9. Aytemir MD, Septioglu E, Calis U (2010) Arzneim-Forsch Drug Res 60:22

    CAS  Google Scholar 

  10. Noh JM, Kwak SY, Seo HS, Seo JH, Kim BG, Lee YS (2009) Bioorg Med Chem Lett 19:5586

    Article  CAS  Google Scholar 

  11. Chang TS (2009) Int J Mol Sci 10:2440

    Article  CAS  Google Scholar 

  12. Molenda JJ, Basinger MA, Hanusa TP, Jones MM (1994) J Inorg Biochem 55:131

    Article  CAS  Google Scholar 

  13. Nurchi VM, Crisponi G, Lachowicz JI, Murgia S, Pivetta T, Remelli M, Rescigno A, Niclos-Gutierrez J, Gonzalez-Perez JM, Dominquez A, Gastineiras A, Szewczuk Z (2010) J Inorg Biochem 104:560

    Article  CAS  Google Scholar 

  14. Zaremba K, Lasocha W, Adamski A, Stanek J, Pettek-Janczyk A (2007) J Coord Chem 60:1537

    Article  CAS  Google Scholar 

  15. Uher M, Szymonska J, Korenova A, Tomasik P (2000) Monatsh Chem 131:301

    Article  CAS  Google Scholar 

  16. Nonius (1998) COLLECT. Nonius BV, Delft

    Google Scholar 

  17. Otwinowski Z, Minor W (1997) In: Carter CW Jr, Sweet RM (eds) Macromolecular crystallography, part A, vol 276. Academic Press, New York, p 307

    Chapter  Google Scholar 

  18. Sheldrick GM (1996) SADABS. University of Göttingen, Göttingen

    Google Scholar 

  19. Altomare A, Burla MC, Camalli M, Cascarano GL, Giacovazzo C, Guagliardi A, Moliterni AGG, Polidori R, Spagna R (1999) J Appl Crystallogr 32:115

    Article  CAS  Google Scholar 

  20. Sheldrick GM (2008) Acta Crystallogr Sect A 64:112

    Article  Google Scholar 

  21. Macrae CF, Edgington PR, McCabe P, Pidcock E, Shields GP, Taylor R, Towler M, van de Streek J (2006) J Appl Crystallogr 39:453

    Article  CAS  Google Scholar 

  22. Baerends EJ, Autschbach J, Bérces A, Bo C, Boerrigter PM, Cavallo L, Chong DP, Deng L, Dickson RM, Ellis DE, Fan L, Fischer TH, Fonseca Guerra C, van Gisbergen SJA, Groeneveld JA, Gritsenko OV, Gruning M, Harris FE, Van den Hoek P (2006) J Chem Theory Comput 2:286

    Google Scholar 

  23. te Velde G, Bickelhaupt FM, Baerends EJ, Fonseca Guerra C, van Gisbergen SJA, Snijders JG, Ziegler T (2001) J Comput Chem 22:931

    Article  CAS  Google Scholar 

  24. Becke AD (1988) Phys Rev A 38:3098

    Article  CAS  Google Scholar 

  25. Perdew JP (1986) Phys Rev B 33:8822

    Article  Google Scholar 

  26. Swart M, Snijders JG (2003) Theor Chem Acc 110:34

    CAS  Google Scholar 

  27. Proynov EI, Sirois S, Salahub DR (1997) Int J Quantum Chem 64:427

    Article  CAS  Google Scholar 

  28. Lee C, Yang W, Parr RG (1988) Phys Rev B 37:785

    Article  CAS  Google Scholar 

  29. Handy NC, Cohen AJ (2001) Mol Phys 99:403

    Article  CAS  Google Scholar 

  30. Perdew JP, Burke K, Ernzerhof M (1996) Phys Rev Lett 77:3865

    Article  CAS  Google Scholar 

  31. Muller P, Herbst-Irmer R, Spek AL, Schneider TR, Sawaya MR (2006) Crystal structure refinement. Oxford University Press, Oxford, p 201

    Book  Google Scholar 

  32. McKinstry HA, Eiland PF, Repinsky R (1952) Acta Crystallogr 5:285

    Article  CAS  Google Scholar 

  33. Lokaj J, Kozisek J, Koren B, Uher M, Vrabel V (1991) Acta Crystallogr Sect C 47:193

    Article  Google Scholar 

  34. Yao GM, Wang YB, Wang LQ, Qin GW (2005) Acta Crystallogr Sect E 61:o1403

    Article  Google Scholar 

  35. Hryniewicz K, Stadnicka K, Pettek-Janczyk A (2009) J Mol Struct 919:255

    Article  CAS  Google Scholar 

  36. Lovell S, Subramony P, Kahr B (1999) J Am Chem Soc 121:7020

    Article  CAS  Google Scholar 

  37. Dong CM, Pu SC, Gao WY (2008) Acta Crystallogr Sect E 64:o1032

    Article  Google Scholar 

  38. Shaheen MA, Hartinger CG, Tahir MN, Shafiq AA, Keppler BK (2009) Acta Crystallogr Sect E 65:o437

    Article  Google Scholar 

  39. Bernstein J, Davis RE, Shimoni L, Chang NL (1995) Angew Chem Int Ed Engl 34:1555

    Article  CAS  Google Scholar 

Download references

Acknowledgments

We thank Scientific Grant Agency of the Ministry of Education of Slovak Republic and the Slovak Academy of Sciences (Grants 1/4454/08 and 1/0562/10) and Ministry of Education of the Czech Republic (Project VZ0021627501).

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Correspondence to Ján Moncol.

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Šimo, F., Moncol, J., Šípoš, R. et al. The Molecular and Crystal Structures of 2-Iodokojic Acid: Experimental and Theoretical Determination. J Chem Crystallogr 41, 1093–1098 (2011). https://doi.org/10.1007/s10870-011-0051-5

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