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Comparative Crystallographic and Hydrogen-bonding Analysis of Pregnane Derivatives

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Abstract

A crystallographic comparison comprised of some geometrical and structural features of a steroids series (pregnane derivatives) is made in the present paper. Some selected bond distances and bond angles of interest are discussed in detail. Conformations of individual ring systems in a series of 46 pregnane derivatives have been calculated and discussed. Correlation of ring conformations especially the rarer ones, vis-a-vis the multiple bonds and ring junctions has been discussed. Graphical presentations of ring conformations are made for all the five- and six-membered rings to show the relative frequency of their occurrence. 17β-side chain conformation is discussed in some pregn-20-one structures. X–H···A intra- and intermolecular interactions in the identified derivatives have been discussed with the standard distance and angle cut-off criteria. Distance-angle scatter plots for both kinds of interactions are presented for a better understanding of the packing interactions which exist in pregnane molecules.

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References

  1. Makin HLJ (1975) Biochemistry of steroid hormones. Blackwell Scientific Publications, Oxford, p 4

    Google Scholar 

  2. Briggs MJ, Brothern J (1970) Steroid biochemistry and pharmacology. Academic Press London, NewYork, p 89

    Google Scholar 

  3. Makin HLJ (1975) Biochemistry of steroid hormones. Blackwell Scientific Publications, Oxford, p 47

    Google Scholar 

  4. Rajnikant, Gupta VK, Hashmi S, Shaffiullah, Varghese B, Dinesh (2002) Crystallogr Rep 47(1):5

    Article  Google Scholar 

  5. Rajnikant, Gupta VK, Khan EH, Shafi S, Shaffiullah, Dinesh (2002) J Chem Crystallogr 32(9):325

    Article  CAS  Google Scholar 

  6. Rajnikant, Dinesh, Anshu S, Mousmi, Shaffiullah (2005) Crystallogr Rep 50(3):419

    Article  CAS  Google Scholar 

  7. Rajnikant, Dinesh, Chand B (2006) Acta Crystallogr A62:136

    CAS  Google Scholar 

  8. Nassimbeni LR, Sheldrick GM, Kennard O (1974) Acta Crystallogr B30:2401

    Google Scholar 

  9. Terzis A, Theophanides T (1975a) Acta Crystallogr B31:790

    CAS  Google Scholar 

  10. Terzis A, Theophanides T (1975b) Acta Crystallogr B31:796

    CAS  Google Scholar 

  11. Karle IL (1975) Acta Crystallogr B31:1519

    CAS  Google Scholar 

  12. De Angles NJ, Doyne TH, Grob RL (1975) Acta Crystallogr B31:2040

    Google Scholar 

  13. Delettre PJ, Mornon JP, Lepicard G (1975) Acta Crystallogr B31:2858

    CAS  Google Scholar 

  14. Weeks CM, Duax WL, Wolff ME (1976) Acta Crystallogr B32:261

    CAS  Google Scholar 

  15. Weeks CM, Duax WL (1976) Acta Crystallogr B32:2819

    CAS  Google Scholar 

  16. Delettre PJ, Mornon JP, Bally PR (1977) Acta Crystallogr B33:610

    CAS  Google Scholar 

  17. Bally PR, Lepicard G, Surcouf E (1977) Acta Crystallogr B33:613

    CAS  Google Scholar 

  18. Lepicard G, Delettre J, Mornon JP (1977) Acta Crystallogr B33:615

    CAS  Google Scholar 

  19. Mornon JP, Lepicard G, Bally PR (1977) Acta Crystallogr B33:1166

    CAS  Google Scholar 

  20. Albertsson J, Oskarsson A, Stevenson C (1978) Acta Crystallogr B34:3027

    CAS  Google Scholar 

  21. Roher DC, Duax WL, Zellen FJ (1978) Acta Crystallogr B34:3801

    Google Scholar 

  22. Roher DC, Duax WL, Peters R, Tanabe M (1982) Acta Crystallogr B38:1362

    Google Scholar 

  23. Van Geerestein VJ, Kanters JA, Duisenberg AJM (1983) Acta Crystallogr C39:1459

    CAS  Google Scholar 

  24. Ahmed FR, Huber CP (1986) Acta Crystallogr C42:1596

    CAS  Google Scholar 

  25. Hossain MB, Vander Helm A, Wasylyk JM, Alam M (1987) Acta Crystallogr C43:2424

    CAS  Google Scholar 

  26. Geerestein VJ, Hendrinks R (1988) Acta Crystallogr C44:379

    Google Scholar 

  27. Krystanovic I, Cvetkovic N, Oberti R, Karanovic L (1989) Acta Crystallogr C45:478

    Google Scholar 

  28. Duax WL, Griffin JF, Strong PD, Guan Y (1989a) Acta Crystallogr C45:1433

    CAS  Google Scholar 

  29. Agafonov V, Legendre B, Rodier N (1989) Acta Crystallogr C45:1661

    CAS  Google Scholar 

  30. Duax WL, Griffin JF, Strong PD, Guan Y, Solo AJ, Semler JR (1989b) Acta Crystallogr C45:2014

    CAS  Google Scholar 

  31. Galdecki Z, Grochulski P, Wawrzak Z, Duax WL, Strong PD (1990a) Acta Crystallogr C46:941

    CAS  Google Scholar 

  32. Galdecki Z, Grochulski P, Wawrzak Z, Duax WL, Strong PD (1990b) Acta Crystallogr C46:1498

    CAS  Google Scholar 

  33. Wawrzak Z, Grochulski P, Galdecki Z, Duax WL, Strong PD, Kirk DN (1991) Acta Crystallogr C47:385

    CAS  Google Scholar 

  34. Czerwinski EW (1991) Acta Crystallogr C47:2598

    CAS  Google Scholar 

  35. Stankovic S, Lazar D, Miljkovic D, Gasi K, Sakac M, Courseille C (1992) Acta Crystallogr C48:498

    CAS  Google Scholar 

  36. Dastidar P, Joseph T, Madyastha KM, Guru Row TN (1993) Acta Crystallogr C49:273

    CAS  Google Scholar 

  37. Palmer RA, Palmer HT, Lisgarten JN, Lancaster R (1993) Acta Crystallogr C49:721

    CAS  Google Scholar 

  38. Gupta VK, Rajnikant, Goswami KN (1994) Acta Crystallogr C50:798

    CAS  Google Scholar 

  39. Singh A, Gupta VK, Rajnikant, Goswami KN (1994) Crystallogr Res Technol 29(6):837

    Article  CAS  Google Scholar 

  40. Singh A, Gupta VK, Rajnikant, Goswami KN, Bhutani KK (1994) Mol Mat 4:295

    CAS  Google Scholar 

  41. Lisgarten DR, Palmer RA, Dominique M, Lisgarten J, Lode W (1995) Acta Crystallogr C51:666

    CAS  Google Scholar 

  42. Luger P, Manuela W, Xuan DN, Pham TK, Chinh LT (1996) Acta Crystallogr C52:1574

    CAS  Google Scholar 

  43. Pniewska B, Romana A, Teresa UH (1996) Acta Crystallogr C52:2288

    CAS  Google Scholar 

  44. Singh A, Gupta VK, Rajnikant, Goswami KN, Gupta BD, Banerjee SK (1996) Mol Mat 6:53

    CAS  Google Scholar 

  45. Garcia MS, Ortega SH, Bratoeff E, Flores G, Ramirez E (1998) Acta Crystallogr C54:2022

    Google Scholar 

  46. Andrade LCR, Paixao MJM, Martins RMLM, Soares HIM, Moreno MJSM, Melo MS, Campos Neves AS (2001) Acta Crystallogr C57:587

    CAS  Google Scholar 

  47. Thompson HW, Lalancette RA (2002) Acta Crystallogr C58:o22

    CAS  Google Scholar 

  48. Fernandez D, Vega D, Ellena JA (2003) Acta Crystallogr C59:o187

    CAS  Google Scholar 

  49. Rajnikant, Dinesh, Anshu, Mousmi (2004) Crystallogr Res Technol 39(4):353

    Article  CAS  Google Scholar 

  50. Dey R, Langer V, Roychowdhury P, Roychowdhury S, Drew MGB (2005) Acta Crystallogr C61:o201

    CAS  Google Scholar 

  51. Sutton LE (1965) Tables of interatomic distances and configuration in molecules and ions. Special Publication No.18. Chemical Society, London

  52. Allen FH, Kennard O, Watson DG, Brammer L, Orpen AG, Taylor RJ (1987) Chem Soc Perkin Trans 2:S1–S19

    Article  Google Scholar 

  53. Bartell LS, Bonham RAJJ (1960) Chem Phys 32:824

    Article  CAS  Google Scholar 

  54. Duax WL, Norton DA (1975) Atlas of steroid structure, vol 1. Plenum Press, New York, p 18

  55. Wellman KM, Djerassi C (1965) J Am Chem Soc 87:60

    Article  CAS  Google Scholar 

  56. Duax WL, Griffin JF, Roher DC, Swenson DC, Weeks CMJ (1981) Steroid Biochem15:41

    Article  CAS  Google Scholar 

  57. Palenik GJ (1965) Acta Crystallogr 9:47

    Article  Google Scholar 

  58. Sudralingam M (1966) Acta Crystallogr B21:495

    Article  Google Scholar 

  59. Pletcher J, Sax MJ (1972) Amer Chem Soc 94:3998

    Article  CAS  Google Scholar 

  60. Taylor R, Kennard O (1982) J Am Chem Soc 104:5063

    Article  CAS  Google Scholar 

  61. Steiner T, Saenger W (1992) Acta Crystallogr B48:819

    CAS  Google Scholar 

  62. Steiner T, Saegner W (1992) J Am Chem Soc 114:10146

    Article  CAS  Google Scholar 

  63. Steiner T (1996) Crystallogr Rev 6:1

    Article  CAS  Google Scholar 

  64. Jeffery GA (1997) An introduction to hydrogen bonding. Oxford University Press, New York, p 400

    Google Scholar 

  65. Steiner T (1998) Acta Crystallogr B54:456

    CAS  Google Scholar 

  66. Desiraju GR, Steiner T (1999) The weak hydrogen bond in structural chemistry and biology. Oxford University Press Inc., New York

    Google Scholar 

  67. Rivelino R, Canuto S, Cautinho (2004) Braz J Phys 34(1):84

    Article  CAS  Google Scholar 

  68. Olovsson I, Jonsson PG (1976) The hydrogen bond. Recent developments in theory & experiment, vol 2. North Holland, Amsterdon, p 393

  69. Desiraju GR (1991) Acc Chem Research 24:272

    Article  Google Scholar 

  70. Dunitz JD (1981) Structural studies on molecules of biological interest. Clarendon, Oxford, p 47

    Google Scholar 

  71. Cramer CJ, Truhlar DG (1999) Chem Rev 99:2161

    Article  CAS  Google Scholar 

  72. Kollman P (1993) Chem Rev 93:2395

    Article  CAS  Google Scholar 

  73. Baldridge KK, Jonas V, Bain ADJ (2000) Chem Phys 113(17):7519

    Article  CAS  Google Scholar 

  74. Allen MP, Tildesley DJ (1987) Computer simulation of liquids. Oxford University Press, New York

    Google Scholar 

  75. Coutinho K, Canuto S, Zerner MCJ (2000) Chem Phys 112(22):9874

    Article  CAS  Google Scholar 

  76. Canuto S, Coutinho K, Trzesniak D (2002) Adv Quantum Chem 41:161

    Article  CAS  Google Scholar 

Download references

Acknowledgements

Rajnikant is grateful to Science and Engineering Research Council of the Department of Science and Technology, Govt. of India for funding under a sponsored project (No. SR/S2/CMP-47/2003).

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Rajnikant, V., Jasrotia, D. & Chand, B. Comparative Crystallographic and Hydrogen-bonding Analysis of Pregnane Derivatives. J Chem Crystallogr 38, 211–230 (2008). https://doi.org/10.1007/s10870-007-9294-6

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  • DOI: https://doi.org/10.1007/s10870-007-9294-6

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