Al-Hashimi HM, Valafar H, Terrell M, Zartler ER, Eidsness MK, Prestegard JH (2000) Variation of molecular alignment as a means of resolving orientational ambiguities in protein structures from dipolar couplings. J Magn Reson 143:402–406
Article
ADS
Google Scholar
Bax A (2003) Weak alignment offers new NMR opportunities to study protein structure and dynamics. Protein Sci 12:1–16
Article
Google Scholar
Bax A, Kontaxis G, Tjandra N (2001) Dipolar couplings in macromolecular structure determination. Meth Enzymol 339:127–174
Article
Google Scholar
Bertini I, Del Bianco C, Gelis I, Katsaros N, Luchinat C, Parigi G, Peana M, Provenzani A, Zoroddu MA (2004) Experimentally exploring the conformational space sampled by domain reorientation in calmodulin. Proc Natl Acad Sci USA 101:6841–6846
Article
ADS
Google Scholar
Bertini I, Kursula P, Luchinat C, Parigi G, Vahokoski J, Wilmanns M, Yuan J (2009) Accurate solution structures of proteins from X-ray data and a minimal set of NMR data: calmodulin-peptide complexes as examples. J Am Chem Soc 131:5134–5144
Article
Google Scholar
Blackledge M (2005) Recent progress in the study of biomolecular structure and dynamics in solution from residual dipolar couplings. Prog Nucl Magn Reson Spectrosc 46:23–61
Article
Google Scholar
Briggman KB, Tolman JR (2003) De Novo determination of bond orientations and order parameters from residual dipolar couplings with high accuracy. J Am Chem Soc 125:10164–10165
Article
Google Scholar
Cantor CR, Schimmel PR (1980) Biophysical chemistry. Freeman, San Francisco
Google Scholar
Chou JJ, Gaemers S, Howder B, Louis JM, Bax A (2001) A simple apparatus for generating stretched polyacrylamide gels, yielding uniform alignment of proteins and detergent micelles. J Biomol NMR 21:377–382
Article
Google Scholar
Chou JJ, Kaufman JD, Stahl SJ, Wingfield PT, Bax A (2002) Micelle-induced curvature in a water-insoluble HIV-1 Env peptide revealed by NMR dipolar coupling measurement in a stretched polyacrylamide gel. J Am Chem Soc 124:2450–2451
Article
Google Scholar
Chou JJ, Baber JL, Bax A (2004) Characterization of phospholipid mixed micelles by translational diffusion. J Biomol NMR 29:299–308
Article
Google Scholar
Cierpicki T, Bushweller JH (2004) Charged gels as orienting media for measurement of residual dipolar couplings in soluble and integral membrane proteins. J Am Chem Soc 126:16259–16266
Article
Google Scholar
Clore GM, Garrett DS (1999) R-factor, free R, and complete cross-validation for dipolar coupling refinement of NMR structures. J Am Chem Soc 121:9008–9012
Article
Google Scholar
Clore GM, Starich MR, Gronenborn AM (1998) Measurement of residual dipolar couplings of marcomolecules aligned in the nematic phase of a colloidal suspension of rod-shaped viruses. J Am Chem Soc 120:10571–10572
Article
Google Scholar
Clore GM, Starich MR, Bewley CA, Cai ML, Kuszewski J (1999) Impact of residual dipolar couplings on the accuracy of NMR structures determined from a minimal number of NOE restraints. J Am Chem Soc 121:6513–6514
Article
Google Scholar
Cornilescu G, Marquardt JL, Ottiger M, Bax A (1998) Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase. J Am Chem Soc 120:6836–6837
Article
Google Scholar
De Angelis AA, Opella SJ (2007) Bicelle samples for solid-state NMR of membrane proteins. Nat Protoc 2:2332–2338
Article
Google Scholar
Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRpipe: a multidimensional spectral processing system based on Unix pipes. J Biomol NMR 6:277–293
Article
Google Scholar
Douglas SM, Chou JJ, Shih WM (2007) DNA-nanotube-induced alignment of membrane proteins for NMR structure determination. Proc Natl Acad Sci USA 104:6644–6648
Article
ADS
Google Scholar
Gaemers S, Bax A (2001) Morphology of three lyotropic liquid crystalline biological NMR media studied by translational diffusion anisotropy. J Am Chem Soc 123:12343–12352
Article
Google Scholar
Ghana R, Walss C, Walmsley JA (1996) Sodium and potassium ion-promoted formation of supramolecular aggregates of 2′-deoxyguanylyl-(3′-5′)-2′-deoxyguanosine. J Biomol Struct Dyn 14:101–110
Article
Google Scholar
Goddard TD, Kneller DG (2008) Sparky 3. University of California, San Francisco
Google Scholar
Han X, Tamm LK (2000) A host-guest system to study structure-function relationships of membrane fusion peptides. Proc Natl Acad Sci USA 97:13097–13102
Article
ADS
Google Scholar
Hansen MR, Mueller L, Pardi A (1998) Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions. Nature Struct Biol 5:1065–1074
Article
Google Scholar
Hus JC, Peti W, Griesinger C, Bruschweiler R (2003) Self-consistency analysis of dipolar couplings in multiple alignments of ubiquitin. J Am Chem Soc 125:5596–5597
Article
Google Scholar
Hus J-C, Salmon L, Bouvignies G, Lotze J, Blackledge M, Brueschweiler R (2008) 16-fold degeneracy of peptide plane orientations from residual dipolar couplings: analytical treatment and implications for protein structure determination. J Am Chem Soc 130:15927–15937
Article
Google Scholar
Kamen DE, Cahill SM, Girvin ME (2007) Multiple alignment of membrane proteins for measuring residual dipolar couplings using lanthanide ions bound to a small metal chelator. J Am Chem Soc 129:1846–1847
Article
Google Scholar
Kay LE, Keifer P, Saarinen T (1992) Pure absorption gradient enhanced heteronuclear single quantum correlation spectroscopy with improved sensitivity. J Am Chem Soc 114:10663–10665
Article
Google Scholar
Lorieau J, Yao LS, Bax A (2008) Liquid crystalline phase of G-tetrad DNA for NMR study of detergent-solubilized proteins. J Am Chem Soc 130:7536–7537
Article
Google Scholar
Lorieau JL, Louis JM, Bax A (2010) The complete influenza hemagglutinin fusion domain adopts a tight helical hairpin arrangement at the lipid: water interface. Proc Natl Acad Sci USA 107:11341–11346
Article
ADS
Google Scholar
Lorieau JL, Louis JM, Bax A (2011) Whole-body rocking motion of a fusion peptide in lipid bilayers from size-dispersed (15)N NMR relaxation. J Am Chem Soc 133:14184–14187
Article
Google Scholar
Losonczi JA, Andrec M, Fischer MWF, Prestegard JH (1999) Order matrix analysis of residual dipolar couplings using singular value decomposition. J Magn Reson 138:334–342
Article
ADS
Google Scholar
Meier S, Haussinger D, Grzesiek S (2002) Charged acrylamide copolymer gels as media for weak alignment. J Biomol NMR 24:351–356
Article
Google Scholar
Meiler J, Prompers JJ, Peti W, Griesinger C, Bruschweiler R (2001) Model-free approach to the dynamic interpretation of residual dipolar couplings in globular proteins. J Am Chem Soc 123:6098–6107
Article
Google Scholar
Mueller GA, Choy WY, Yang DW, Forman-Kay JD, Venters RA, Kay LE (2000) Global folds of proteins with low densities of NOEs using residual dipolar couplings: application to the 370-residue maltodextrin-binding protein. J Mol Biol 300:197–212
Article
Google Scholar
Ottiger M, Bax A (1999) Bicelle-based liquid crystals for NMR-measurement of dipolar couplings at acidic and basic pH values. J Biomol NMR 13:187–191
Article
Google Scholar
Peti W, Meiler J, Bruschweiler R, Griesinger C (2002) Model-free analysis of protein backbone motion from residual dipolar couplings. J Am Chem Soc 124:5822–5833
Article
Google Scholar
Prestegard JH, Al-Hashimi HM, Tolman JR (2000) NMR structures of biomolecules using field oriented media and residual dipolar couplings. Q Rev Biophys 33:371–424
Article
Google Scholar
Ramirez BE, Bax A (1998) Modulation of the alignment tensor of macromolecules dissolved in a dilute liquid crystalline medium. J Am Chem Soc 120:9106–9107
Article
Google Scholar
Rodriguez-Castaneda F, Haberz P, Leonov A, Griesinger C (2006) Paramagnetic tagging of diamagnetic proteins for solution NMR. Magn Reson Chem 44:S10–S16
Article
Google Scholar
Ruan K, Tolman JR (2005) Composite alignment media for the measurement of independent sets of NMR residual dipolar couplings. J Am Chem Soc 127:15032–15033
Article
Google Scholar
Ruan K, Briggman KB, Tolman JR (2008) De novo determination of internuclear vector orientations from residual dipolar couplings measured in three independent alignment media. J Biomol NMR 41:61–76
Article
Google Scholar
Ruckert M, Otting G (2000) Alignment of biological macromolecules in novel nonionic liquid crystalline media for NMR experiments. J Am Chem Soc 122:7793–7797
Article
Google Scholar
Sanders CR, Schwonek JP (1992) Characterization of magnetically orientable bilayers in mixtures of dihexanoylphosphatidylcholine and dimyristoylphosphatidylcholine by solid-state NMR. Biochemistry 31:8898–8905
Article
Google Scholar
Sass J, Cordier F, Hoffmann A, Rogowski M, Cousin A, Omichinski JG, Lowen H, Grzesiek S (1999) Purple membrane induced alignment of biological macromolecules in the magnetic field. J Am Chem Soc 121:2047–2055
Article
Google Scholar
Sass H-J, Musco G, Stahl SJ, Wingfield PT, Grzesiek S (2000) Solution NMR of proteins within polyacrylamide gels: diffusional properties and residual alignment by mechanical stress or embedding of oriented purple membranes. J Biomol NMR 18:303–309
Article
Google Scholar
Saupe A, Englert G (1963) High-resolution nuclear magnetic resonance spectra of oriented molecules. Phys Rev Lett 11:462–464
Article
ADS
Google Scholar
Shortle D, Ackerman MS (2001) Persistence of native-like topology in a denatured protein in 8 M urea. Science 293:487–489
Article
Google Scholar
Struppe J, Whiles JA, Vold RR (2000) Acidic phospholipid bicelles: a versatile model membrane system. Biophys J 78:281–289
Article
Google Scholar
Su XC, Otting G (2010) Paramagnetic labelling of proteins and oligonucleotides for NMR. J Biomol NMR 46:101–112
Article
Google Scholar
Tjandra N, Bax A (1997) Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium. Science 278:1111–1114
Article
ADS
Google Scholar
Tolman JR (2002) A novel approach to the retrieval of structural and dynamic information from residual dipolar couplings using several oriented media in biomolecular NMR spectroscopy. J Am Chem Soc 124:12020–12030
Article
Google Scholar
Tolman JR, Ruan K (2006) NMR residual dipolar couplings as probes of biomolecular dynamics. Chem Rev 106:1720–1736
Article
Google Scholar
Tolman JR, Flanagan JM, Kennedy MA, Prestegard JH (1995) Nuclear magnetic dipole interactions in field-oriented proteins—information for structure determination in solution. Proc Natl Acad Sci USA 92:9279–9283
Article
ADS
Google Scholar
Tycko R, Blanco FJ, Ishii Y (2000) Alignment of biopolymers in strained gels: a new way to create detectable dipole–dipole couplings in high-resolution biomolecular NMR. J Am Chem Soc 122:9340–9341
Article
Google Scholar
Ulmer TS, Ramirez BE, Delaglio F, Bax A (2003) Evaluation of backbone proton positions and dynamics in a small protein by liquid crystal NMR spectroscopy. J Am Chem Soc 125:9179–9191
Article
Google Scholar
Vold RR, Prosser RS (1996) Magnetically oriented phospholipid bilayered micelles for structural studies of polypeptides. Does the ideal bicelle exist? J Magn Reson, Ser B 113:267–271
Article
Google Scholar
Vold RR, Prosser RS, Deese AJ (1997) Isotropic solutions of phospholipid bicelles: a new membrane mimetic for high-resolution NMR studies of polypeptides. J Biomol NMR 9:329–335
Article
Google Scholar
Wohnert J, Franz KJ, Nitz M, Imperiali B, Schwalbe H (2003) Protein alignment by a coexpressed lanthanide-binding tag for the measurement of residual dipolar couplings. J Am Chem Soc 125:13338–13339
Article
Google Scholar
Yao LS, Bax A (2007) Modulating protein alignment in a liquid-crystalline medium through conservative mutagenesis. J Am Chem Soc 129:11326–11327
Article
Google Scholar
Yao L, Vogeli B, Torchia DA, Bax A (2008) Simultaneous NMR study of protein structure and dynamics using conservative mutagenesis. J Phys Chem B 112:6045–6056
Article
Google Scholar
Yao LS, Ying JF, Bax A (2009) Improved accuracy of N-15-H-1 scalar and residual dipolar couplings from gradient-enhanced IPAP-HSQC experiments on protonated proteins. J Biomol NMR 43:161–170
Article
Google Scholar
Zhang Q, Sun XY, Watt ED, Al-Hashimi HM (2006) Resolving the motional modes that code for RNA adaptation. Science 311:653–656
Article
ADS
Google Scholar
Zidek L, Padrta P, Chmelik J, Sklenar V (2003) Internal consistency of NMR data obtained in partially aligned biomacromolecules. J Magn Reson 162:385–395
Article
ADS
Google Scholar