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Advances towards resonance assignments for uniformly—13C, 15N enriched bacteriorhodopsin at 18.8 T in purple membranes

Abstract

Solid state NMR spectra from uniformly 13C, 15N enriched bacteriorhodospin (bR) purified from H. salinarium were acquired at 18.8 T using magic angle spinning methods. Isolated resonances of 2D 13C−13C spectra exhibited 0.50–0.55 ppm line-widths. Several amino acid types could be assigned, and at least 12 out of 15 Ile peaks could be resolved clearly and identified based on their characteristic chemical shifts and connectivities. This study confirms that high resolution solid state NMR spectra can be obtained for a 248 amino acid uniformly labeled membrane protein in its native membrane environment and indicates that site-specific assignments are likely to be feasible with heteronuclear multidimensional spectra.

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Abbreviations

NMR:

Nuclear magnetic resonance

bR:

Bacteriorhodospin

References

  • Egorova-Zachernyuk TA, Hollander J, Fraser N, Gast P, Hoff AJ, Cogdell R, de Groot HJM, Baldus M (2001) Heteronuclear 2D-correlations in a uniformly C-13, N-15 labeled membrane-protein complex at ultra-high magnetic fields. J Biomol NMR 19:243–253

    Article  Google Scholar 

  • Etzkorn M, Martell S, Andronesi OC, Seidel K, Engelhard M, Baldus M (2006) Secondary structure, dynamics, and topology of a seven-helix receptor in native membranes, studied by solid-state NMR spectroscopy. Angew Chem Int Ed 46:459–462

    Article  Google Scholar 

  • Herzfeld J, Lansing JC (2002) Magnetic resonance studies of the bacteriorhodopsin pump cycle. Annu Rev Biophys Biomol Struct 31:73–95

    Article  Google Scholar 

  • Jehle S, Hiller M, Rehbein K, Diehl A, Oschkinat H, van Rossum BJ (2006) Spectral editing: selection of methyl groups in multidimensional solid-state magic-angle spinning NMR. J Biomol NMR 36:169–177

    Article  Google Scholar 

  • Kamihira M, Vosegaard T, Mason AJ, Straus SK, Nielsen NC, Watts A (2005) Structural and orientational constraints of bacteriorhodopsin in purple membranes determined by oriented-sample solid-state NMR spectroscopy. J Struct Biol 149:7–16

    Article  Google Scholar 

  • Kobayashi M, Matsuki Y, Yumen I, Fujiwara T, Akutsu H (2006) Signal assignment and secondary structure analysis of a uniformly [13C, 15N]-labeled membrane protein, H+-ATP synthase subunit c, by magic-angle spinning solid-state NMR. J Biomol NMR 36:279–293

    Article  Google Scholar 

  • Lange A, Giller K, Hornig S, Martin-Eauclaire M-F, Pongs O, Becker S, Baldus M (2006a) Toxin-induced conformational changes in a potassium channel revealed by solid-state NMR. Nature 440:959–962

    Article  ADS  Google Scholar 

  • Lange A, Giller K, Pongs O, Becker S, Baldus M (2006b) Two-dimensional solid-state NMR applied to a chimeric potassium channel. J Recept Signal Transduct 26:379–393

    Article  Google Scholar 

  • Mason AJ, Grage SL, Straus SK, Glaubitz C, Watts A (2004) Identifying anisotropic constraints in multiply labeled bacteriorhodopsin by 15N MAOSS NMR: a general approach to structural studies of membrane proteins. Biophys J 86:1610–1617

    Google Scholar 

  • Oesterhelt D, Stoeckenius W (1971) Rhodopsin-like protein from purple membrane of Halobacterium halobium. Nat New Biol 233:149–&

    Google Scholar 

  • Oesterhelt D, Stoeckenius W (1973) Functions of a new photoreceptor membrane. Proc Natl Acad Sci USA 70:2853–2857

    Article  ADS  Google Scholar 

  • Oesterhelt D, Stoeckenius W (1974) Isolation of the cell membrane of Halobacterium halobium and its fractionation into red and purple membrane. Methods Enzymol 31:667–678

    Article  Google Scholar 

  • Patzelt H, Simon B, terLaak A, Kessler B, Kuhne R, Schmieder P, Oesterhelt D, Oschkinat H (2002) The structures of the active center in dark-adapted bacteriorhodopsin by solution-state NMR spectroscopy. Proc Natl Acad Sci 99:9765–9770

    Article  ADS  Google Scholar 

  • Saito H, Naito A (2007) NMR studies on fully hydrated membrane proteins, with emphasis on bacteriorhodopsin as a typical and prototype membrane protein. Biochim Biophys Acta 1768:3145–3161

    Article  Google Scholar 

  • Saito H, Webb GA (2006) Site-directed solid-state NMR on membrane proteins. In: Annu Rep NMR Spectrosc, Academic Press, 57:99–175

  • Schubert M, Kolbe M, Kessler B, Oesterhelt D, Schmieder P (2002) Heteronuclear multidimensional NMR spectroscopy of solubilized membrane proteins: resonance assignment of native bacteriorhodopsin. ChemBioChem 3:1019–1023

    Article  Google Scholar 

  • Smith SO, de Groot HJ, Gebhard R, Courtin JM, Lugtenburg J, Herzfeld J, Griffin RG (1989) Structure and protein environment of the retinal chromophore in light- and dark-adapted bacteriorhodopsin studied by solid-state NMR. Biochemistry 28:8897–8904

    Article  Google Scholar 

  • Takegoshi K, Nakamura S, Terao T (2001) C-13-H-1 dipolar-assisted rotational resonance in magic-angle spinning NMR. Chem Phys Lett 344:631–637

    Article  ADS  Google Scholar 

  • van Gammeren AJ, Buda F, Hulsbergen FB, Kiihne S, Hollander JG, Egorova-Zachernyuk TA, Fraser NJ, Cogdell RJ, de Groot HJM (2005a) Selective chemical shift assignment of B800 and B850 bacteriochlorophylls in uniformly [C-13, N-15]-labeled light-harvesting complexes by solid-state NMR spectroscopy at ultra-high magnetic field. J Am Chem Soc 127:3213–3219

    Article  Google Scholar 

  • van Gammeren AJ, Hulsbergen FB, Hollander JG, de Groot HJM (2005b) Residual backbone and side-chain 13C and 15N resonance assignments of the intrinsic transmembrane light-harvesting 2 protein complex by solid-state magic angle spinning NMR spectroscopy. J Biomol NMR 31:279–293

    Article  Google Scholar 

  • Varga K, Aslimovska L, Parrot I, Dauvergne M-T, Haertlein M, Forsyth T, Watts A (2007a) NMR crystallography: the effect of deuteration on high resolution 13C solid state NMR spectra of a 7-TM protein. Biochim Biophys Acta 1768:3029–3035

    Article  Google Scholar 

  • Varga K, Tian L, McDermott AE (2007b) Solid state NMR study and assignments of the KcsA potassium ion channel of S. lividans. Biochim Biophys Acta 1774:1604–1613

    Google Scholar 

  • Zhang HY, Neal S, Wishart DS (2003) RefDB: a database of uniformly referenced protein chemical shifts. J Biomol NMR 25:173–195

    Article  Google Scholar 

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Acknowledgements

We acknowledge financial support from EPSRC (under grants GR/R99393/01 and EP/C015452/1), Bionanotechnology IRC, Magnex Scientific and Varian Inc., and the advice from the staff of the ILL-EMBL Deuteration Laboratory. This work has benefited from the activities of the DLAB & JRA7 consortia funded by the EU under contracts HPRI–2001–50065 and RII3–CT–2003–505925.

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Correspondence to Anthony Watts.

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Varga, K., Aslimovska, L. & Watts, A. Advances towards resonance assignments for uniformly—13C, 15N enriched bacteriorhodopsin at 18.8 T in purple membranes. J Biomol NMR 41, 1–4 (2008). https://doi.org/10.1007/s10858-008-9235-5

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  • DOI: https://doi.org/10.1007/s10858-008-9235-5

Keywords

  • Solid state NMR
  • Bacteriorhodospin
  • Assignment
  • Membrane protein