Skip to main content
Log in

Resolution enhancement by homonuclear J-decoupling: application to three-dimensional solid-state magic angle spinning NMR spectroscopy

  • Article
  • Published:
Journal of Biomolecular NMR Aims and scope Submit manuscript

Abstract

We describe a simple protocol to achieve homonuclear J-decoupling in the indirect dimensions of multidimensional experiments, and to enhance spectral resolution of the backbone Cα carbons in the 3D NCACX experiment. In the proposed protocol, the refocusing of the Cα–CO homonuclear J-couplings is achieved by applying an off-resonance selective π pulse to the CO spectral region in the middle of Cα chemical shift evolution. As is commonly used in solution NMR, a compensatory echo period is used to refocus the unwanted chemical shift evolution of Cα spins, which takes place during the off-resonance selective pulse. The experiments were carried out on the β1 immunoglobulin binding domain of protein G (GB1). In GB1, such implementation results in significantly reduced line widths, and leads to an overall sensitivity enhancement.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

Abbreviations

SSNMR:

Solid-state NMR

MAS:

Magic angle spinning

GB1:

β1 immunoglobulin binding domain of protein G

TPPI:

Time proportional phase increment

SPINAL64:

Small phase incremental alternation with 64 steps

DSS:

2,2-Dimethyl-2-silapentane-5-sulfonic acid

References

  • Andrew ER, Bradbury A, Eades RG, Wynn VT (1963) Nuclear cross relaxation induced by specimen rotation. Phys Lett 4:99–100

    Article  ADS  Google Scholar 

  • Baldus M, Petkova AT, Herzfeld J, Griffin RG (1998) Cross polarization in the tilted frame: assignment and spectral simplification in heteronuclear spin systems. Mol Phys 95:1197–1207

    Article  ADS  Google Scholar 

  • Bruschweiler R, Griesinger C, Sorensen OW, Ernst RR (1988) Combined use of hard and soft pulses for omega-1 decoupling in two-dimensional NMR-spectroscopy. J Magn Reson 78:178–185

    Google Scholar 

  • Chen L, Kaiser JM, Polenova T, Yang J, Rienstra CM, Mueller LJ (2007) Backbone assignments in solid-state proteins using J-based 3D heteronuclear correlation spectroscopy. J Am Chem Soc 129:10650–10651

    Article  Google Scholar 

  • Chevelkov V, Chen ZJ, Bermel W, Reif B (2005) Resolution enhancement in MAS solid-state NMR by application of C-13 homonuclear scalar decoupling during acquisition. J Magn Reson 172:56–62

    Article  ADS  Google Scholar 

  • Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRPipe - a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6:277–293

    Article  Google Scholar 

  • Duma L Hediger S, Brutscher B, Bockmann A, Emsley L (2003a) Resolution enhancement in multidimensional solid-state NMR spectroscopy of proteins using spin-state selection. J Am Chem Soc 125:11816–11817

    Article  Google Scholar 

  • Duma L, Hediger S, Lesage A, Emsley L (2003b) Spin-state selection in solid-state NMR. J Magn Reson 164:187–195

    Article  ADS  Google Scholar 

  • Duma L, Hediger S, Lesage A, Sakellariou D, Emsley L (2003c) Carbon-13 lineshapes in solid-state NMR of labeled compounds. Effects of coherent CSA-dipolar cross-correlation. J Magn Reson 162:90–101

    Article  ADS  Google Scholar 

  • Franks WT, Zhou DH, Wylie BJ, Money BG, Graesser DT, Frericks HL, Sahota G, Rienstra CM (2005) Magic-angle spinning solid-state NMR spectroscopy of the beta 1 immunoglobulin binding domain of protein G (GB1): N-15 and C-13 chemical shift assignments and conformational analysis. J Am Chem Soc 127:12291–12305

    Article  Google Scholar 

  • Fung BM, Khitrin AK, Ermolaev K (2000) An improved broadband decoupling sequence for liquid crystals and solids. J Magn Reson 142:97–101

    Article  ADS  Google Scholar 

  • Hiller M, Krabben L, Vinothkumar KR, Castellani F, van Rossum BJ, Kuhlbrandt W, Oschkinat H (2005) Solid-state magic-angle spinning NMR of outer-membrane protein G from Escherichia coli. Chembiochem 6:1679–1684

    Article  Google Scholar 

  • Hong M (1999) Resonance assignment of C-13/N-15 labeled solid proteins by two- and three-dimensional magic-angle-spinning NMR. J Biomol NMR 15:1–14

    Article  Google Scholar 

  • Igumenova TI, McDermott AE (2003) Improvement of resolution in solid state NMR spectra with J-decoupling: an analysis of lineshape contributions in uniformly C-13-enriched amino acids and proteins. J Magn Reson 164:270–285

    Article  ADS  Google Scholar 

  • Igumenova TI, McDermott AE (2005) Homo-nuclear C-13 J-decoupling in uniformly C-13-enriched solid proteins. J Magn Reson 175:11–20

    Article  ADS  Google Scholar 

  • Jaroniec CP, MacPhee CE, Astrof NS, Dobson CM, Griffin RG (2002) Molecular conformation of a peptide fragment of transthyretin in an amyloid fibril. Proc Natl Acad Sci USA 99:16748–16753

    Article  ADS  Google Scholar 

  • Keller R (2004) The computer aided resonance assignment tutorial, first ed. CANTINA Verlag Goldau

  • Levitt MH, Raleigh DP, Creuzet F, Griffin RG (1990) Theory and simulations of homonuclear spin pair systems in rotating solids. J Chem Phys 92:6347–6364

    Article  ADS  Google Scholar 

  • Li Y, Wylie BJ, Rienstra CM (2006) Selective refocusing pulses in magic-angle spinning NMR: characterization and applications to multi-dimensional protein spectroscopy. J Magn Reson 179:206–216

    Article  ADS  Google Scholar 

  • Lorch M, Fahem S, Kaiser C, Weber I, Mason AJ, Bowie JU, Glaubitz C (2005) How to prepare membrane proteins for solid-state NMR: a case study on the α-helical integral membrane protein diacylglycerol kinase from E. coli. Chembiochem 6:1693–1700

    Article  Google Scholar 

  • Markley JL, Bax A, Arata Y, Hilbers CW, Kaptein R, Sykes BD, Wright PE, Wuthrich K (1998) Recommendations for the presentation of NMR structures of proteins and nucleic acids - IUPAC-IUBMB-IUPAB inter-union task group on the standardization of data bases of protein and nucleic acid structures determined by NMR spectroscopy. Eur J Biochem 256:1–15

    Article  Google Scholar 

  • Martin RW, Zilm KW (2003) Preparation of protein nanocrystals and their characterization by solid state NMR. J Magn Reson 165:162–174

    Article  ADS  Google Scholar 

  • Morcombe CR, Zilm KW (2003) Chemical shift referencing in MAS solid state NMR. J Magn Reson 162:479–486

    Article  ADS  Google Scholar 

  • Paravastu AK, Petkova AT, Tycko R (2006) Polymorphic fibril formation by residues 10-40 of the Alzheimer's beta-amyloid peptide. Biophys J 90:4618–4629

    Article  Google Scholar 

  • Pauli J, van Rossum B, Forster H, de Groot HJM, Oschkinat H (2000) Sample optimization and identification of signal patterns of amino acid side chains in 2D RFDR spectra of the alpha-spectrin SH3 domain. J Magn Reson 143:411–416

    Article  ADS  Google Scholar 

  • Pines A, Gibby MG, Waugh JS (1973) Proton-enhanced NMR of dilute spins in solids. J Chem Phys 59:569–590

    Article  ADS  Google Scholar 

  • Rienstra CM, Hohwy M, Hong M, Griffin RG (2000) 2D and 3D N-15-C-13-C-13 NMR chemical shift correlation spectroscopy of solids: assignment of MAS spectra of peptides. J Am Chem Soc 122:10979–10990

    Article  Google Scholar 

  • Schmidt HL, Sperling LJ, Gao YG, Wylie BJ, Boettcher JM, Wilson SR, Rienstra CM (2007) Crystal polymorphism of protein GB1 examined by solid-state NMR spectroscopy and X-ray diffraction. J Phys Chem B 111:14362–14369

    Article  Google Scholar 

  • Siemer AB, Ritter C, Ernst M, Riek R, Meier BH (2005) High-resolution solid-state NMR spectroscopy of the prion protein HET-s in its amyloid conformation. Angewandte Chemie-International Edition 44:2441–2444

    Article  Google Scholar 

  • Straus SK, Bremi T, Ernst RR (1996) Resolution enhancement by homonuclear J decoupling in solid-state MAS NMR. Chem Phys Lett 262:709–715

    Article  ADS  Google Scholar 

  • Straus SK, Bremi T, Ernst RR (1998) Experiments and strategies for the assignment of fully C-13/N-15-labelled polypeptides by solid state NMR. J Biomol NMR 12:39–50

    Article  Google Scholar 

  • Sun BQ, Rienstra CM, Costa PR, Williamson JR, Griffin RG (1997) 3D N-15-C-13-C-13 chemical shift correlation spectroscopy in rotating solids. J Am Chem Soc 119:8540–8546

    Article  Google Scholar 

  • Takegoshi K, Nakamura S, Terao T (2001) C-13-H-1 dipolar-assisted rotational resonance in magic-angle spinning NMR. Chem Phys Lett 344:631–637

    Article  ADS  Google Scholar 

  • Wylie BJ, Sperling LJ, Rienstra CM (2008) Isotropic chemical shifts in magic-angle spinning NMR spectra of proteins. Phys Chem Chem Phys 10:405–413

    Article  Google Scholar 

  • Zhong L, Bamm VV, Ahmed MA, Harauz G, Ladizhansky V (2007) Solid-state NMR spectroscopy of 18.5 kDa myelin basic protein reconstituted with lipid vesicles: spectroscopic characterisation and spectral assignments of solvent-exposed protein fragments. Biochim Biophys Acta 1768:3193–3205

    Article  Google Scholar 

  • Zhou DHH, Kloepper KD, Winter KA, Rienstra CM (2006) Band-selective C-13 homonuclear 3D spectroscopy for solid proteins at high field with rotor-synchronized soft pulses. J Biomol NMR 34:245–257

    Article  Google Scholar 

Download references

Acknowledgements

This research was supported by the University of Guelph (start-up funds to V.L.), the Natural Sciences and Engineering Research Council of Canada (DG250202 to L.S.B. and Grants RG298480-04 to V.L.), the Canada Foundation for Innovation, and the Ontario Innovation Trust. V.L. holds Canada Research Chair in Biophysics, and is a recipient of an Early Researcher Award from the Ontario Ministry of Research and Innovation. L.S. is a recipient of the Ontario Graduate Scholarship. M.A. is a recipient of a Doctoral Studentship from the Ministry of Higher Education and Scientific Research of Egypt.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Vladimir Ladizhansky.

Electronic supplementary material

Below is the link to the electronic supplementary material.

(DOC 681 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Shi, L., Peng, X., Ahmed, M.A.M. et al. Resolution enhancement by homonuclear J-decoupling: application to three-dimensional solid-state magic angle spinning NMR spectroscopy. J Biomol NMR 41, 9–15 (2008). https://doi.org/10.1007/s10858-008-9233-7

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10858-008-9233-7

Keywords

Navigation