Skip to main content
Log in

Computational assessment of synthetic procedures

  • Original Article
  • Published:
Journal of Computer-Aided Molecular Design Aims and scope Submit manuscript

Abstract

Synthetic chemistry is hard because some reasonable looking molecules cannot be made, because there are errors in the chemical literature, because it is easy to miss reaction possibilities and because even the shape of molecules is very difficult to determine. We propose an approach to the computational analysis of reactions that tries to circumvent these difficulties, by restricting the analysis to simple rules for reactivity that can generate a large number of competing pathways. This huge ensemble is filtered using computational methods to pick out the most likely pathways, and to suggest possible products.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8
Fig. 9
Fig. 10
Fig. 11
Fig. 12
Fig. 13

Similar content being viewed by others

References

  1. Paterson I, Anderson EA (2005) Science 310:451

    Article  Google Scholar 

  2. Yoon TP, Jacobsen EN (2003) Science 299:1691

    Article  CAS  Google Scholar 

  3. de Silva KM, Goodman JM (2005) J Chem Inf Model 45:81

    Article  Google Scholar 

  4. Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (1997) Adv Drug Del Rev 23:3

    Article  CAS  Google Scholar 

  5. Adams SE, Goodman JM, Kidd RJ, McNaught AD, Murray-Rust P, Norton FR, Townsend JA, Waudby CA (2004) Org Biomol Chem 2:3067

    Article  CAS  Google Scholar 

  6. Russell B, Goodman JM University of Cambridge, manuscript in preparation

  7. Lee C, Yang W, Parr RG (1988) Phys Rev B 37:785

    Google Scholar 

  8. Harding WW, Lewis PA, Jacobs HM, McLean S, Reynolds W, Tay L, Yang J-P (1995) Tetrahedron Lett 36:8137

    Article  Google Scholar 

  9. (a) Xiong ZM, Corey EJ, (2000) J Am Chem Soc 122:4831. (b) Xiong ZM, Corey, EJ (2000) J Am Chem Soc 122:9328. (c) Morimoto Y, Iwai T, Kinoshita T (2000) J Am Chem Soc 122:7124

  10. Bellenie BR, Goodman JM (2001) Tetrahedron Lett 42:7477

    Article  CAS  Google Scholar 

  11. Bauer I, Maranda L, Young KA, Shimizu Y (1995) Tetrahedron Lett 36:991

    Article  CAS  Google Scholar 

  12. Walsh LM, Goodman JM (2003) Chem Comm 20:2616

  13. Fleming I, Woodward RB (1973) J Chem Soc, Perkin Trans I, 1653

  14. Davies JE, Fleming I, Goodman JM (2003) Org Biomol Chem 1:3570

    Article  CAS  Google Scholar 

  15. Dominey AP, Goodman JM (1999) Org Lett 1:473

    Article  CAS  Google Scholar 

  16. Nadin A, Nicolaou KC (1996) Angew Chem, Int Ed Engl 35:1622

    Article  CAS  Google Scholar 

  17. Goodman JM (1997) J Chem Inf Comput Sci 37:876

    Article  CAS  Google Scholar 

  18. Nair N, Goodman JM (1998) J Chem Inf Comput Sci 38:317

    Article  CAS  Google Scholar 

  19. Hayakawa H, Ohmori M, Takamichi K, Matsuda F, Miyashita M (1997) Chem Commun 1219

  20. Jorgensen WL, Laird ER (1990) Pure Appl Chem 62:1921

    CAS  Google Scholar 

  21. Höllering R, Gasteiger J, Steinhauer L, Schulz K, Herwig A. (2000) J Chem Inf ComputSci 40:482

    Article  Google Scholar 

  22. Satoh H, Funatsu K (1996) J Chem Inf Comput Sci 36:173

    Article  CAS  Google Scholar 

  23. Sello G (1992) J Chem Inf Comput Sci 32:713

    Article  CAS  Google Scholar 

  24. Agarwal KK, Larsen DL, Gelernter HL (1978) Comput Chem 2:75

    Article  CAS  Google Scholar 

  25. Ugi I, Bauer J, Blomberger C, Brandt J, Dietz A, Fontain E, Gruber B, vScholley-Pfab A, Senff A, Stein NJ (1994) Chem Inf Comput Sci 34:3

    CAS  Google Scholar 

  26. Hendrickson JB, Parks CA (1992) J Chem Inf Comput Sci 32:209

    CAS  Google Scholar 

  27. Zefirov NS, Baskin II, Palyulin VA (1994) J Chem Inf Comput Sci 34:994

    Article  CAS  Google Scholar 

  28. Socorro IM, Taylor K, Goodman JM (2005) Org Lett 7:3541

    Article  CAS  Google Scholar 

  29. Socorro IM, Goodman JM (2006) J Chem Inf Model 46:606

    Article  CAS  Google Scholar 

  30. Java Version 1.4.1. http://java.sun.com/ (accessed Sep 2005)

  31. Cheshire Studio, version 3.0.0.54.; Elsevier MDL: San Leandro, CA

  32. Maestro, version 5.0.019; Schrodinger Inc.: Portland, Oregon, 2000

  33. MDL CTfile Formats http://www.mdl.com/solutions/white_papers/ctfile_formats.jsp (accessed March 2007)

  34. Ciavatta ML, Gavagnin M, Puliti R, Cimino G (1996) Tetrahedron 52:12831

    Article  CAS  Google Scholar 

Download references

Acknowledgments

We thank Elsevier MDL and Unilever for financial support.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jonathan M. Goodman.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Goodman, J.M., Socorro, I.M. Computational assessment of synthetic procedures. J Comput Aided Mol Des 21, 351–357 (2007). https://doi.org/10.1007/s10822-007-9120-4

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10822-007-9120-4

Keywords

Navigation