Abstract
Purpose
To identify the genetic cause of a cryptorchidism patient carrying a non-canonical splicing variant highlighted by SPCards platform in RXFP2 and to provide a comprehensive overview of RXFP2 variants with cryptorchidism correlation.
Methods
We identified a homozygous non-canonical splicing variant by whole-exome sequencing and Sanger sequencing in a case with cryptorchidism and non-obstructive azoospermia (NOA). As the pathogenicity of this non-canonical splicing variant remained unclear, we initially utilized the SPCards platform to predict its pathogenicity. Subsequently, we employed a minigene splicing assay to further evaluate the influence of the identified splicing variant. Microdissection testicular sperm extraction (micro-TESE) combined with intracytoplasmic sperm injection (ICSI) was performed. PubMed and Human Genome Variant Database (HGMD) were queried to search for RXFP2 variants.
Results
We identified a homozygous non-canonical splicing variant (NM_130806: c.1376-12A > G) in RXFP2, and confirmed this variant caused aberrant splicing of exons 15 and 16 of the RXFP2 gene: 11 bases were added in front of exon 16, leading to an abnormal transcript initiation and a frameshift. Fortunately, the patient successfully obtained his biological offspring through micro-TESE combined with ICSI. Four cryptorchidism-associated variants in RXFP2 from 90 patients with cryptorchidism were identified through a literature search in PubMed and HGMD, with different inheritance patterns.
Conclusion
This is the first cryptorchidism case carrying a novel causative non-canonical splicing RXFP2 variant. The combined approach of micro-TESE and ICSI contributed to an optimal pregnancy outcome. Our literature review demonstrated that RXFP2 variants caused cryptorchidism in a recessive inheritance pattern, rather than a dominant pattern.
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Data availability
The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request, without undue reservation.
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Acknowledgements
We would like to thank all the individuals who participated in and supported this research.
Funding
This study was supported by the National Natural Science Foundation of China (No. 82101681, 82071705, and 82101944) and the China Postdoctoral Science Foundation (2023M730019).
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DT, KL, and ML designed the study. ZD and HY collected the samples and data. ZS and KL performed the data analysis. MG, HY, and ZS were responsible for in vitro experimentations. DT and HG were responsible for surgical operations. LR and HG wrote the paper. All authors have read and approved the final manuscript.
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Lewen Ruan, Meng Gu, and Hao Geng contributed equally to this work and shared first authorship.
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10815_2024_3070_MOESM3_ESM.pdf
Supplementary file3 (PDF 6 KB) Online Source 3 Results of homozygosity mapping. We have employed Automap (https://automap.iob.ch/) for homology mapping of the patient. The blue vertical lines represent the homozygous regions, while the black lines indicate the boundaries of a homozygous region: chr13-30764037-45465272. The red line indicates the location of the homozygous variant c.1376-12A>G identified in this study.
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Ruan, L., Gu, M., Geng, H. et al. Achieving an optimal pregnancy outcome through the combined utilization of micro-TESE and ICSI in cryptorchidism associated with a non-canonical splicing variant in RXFP2. J Assist Reprod Genet (2024). https://doi.org/10.1007/s10815-024-03070-4
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DOI: https://doi.org/10.1007/s10815-024-03070-4