Skip to main content
Log in

Calculation and interpretation of IR and resonant raman spectra of 5-halosubstituted uracils

  • Published:
Journal of Applied Spectroscopy Aims and scope

Abstract

We have used valence optical theory to carry out calculation and analysis of in-plane vibrations and intensities of IR spectra for isolated 5-fluorouracil and 5-bromouracil molecules. We give a complete interpretation of the corresponding bands in the absorption spectra. We have carried out a quantum mechanical calculations of the relative intensities in the resonant Raman spectra of 5-fluorouracil and 5-chlorouracil. The calculated spectra for the molecular models obtained agree quantitatively with the experimental spectra, and reproduce the observed characteristic spectral differences in the series of molecules: uracil, 5-fluorouracil, 5-chlorouracil, and 5-bromouracil. The models obtained for the molecules can be used for calculation and analysis of the spectra of other halosubstituted nucleic acid bases.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. B. A. Katzung, Basic and Clinical Pharmacology, 6th Ed., Appleton and Lange, Norwalk (1995).

    Google Scholar 

  2. H. O. Kim, J. Med. Chem., 35, 1987–1990 (1992).

    Article  Google Scholar 

  3. N. K. Kochetkov, E. I. Budovskii, E. D. Sverdlov, N. A. Simukova, M. F. Turchinskii, and V. N. Shibaev, Organic Chemistry of Nucleic Acids [in Russian], Khimiya, Moscow (1970).

    Google Scholar 

  4. D. E. Metzler, Biochemistry. The Chemical Reaction of Living Cells, Academic Press, London (1977).

    Google Scholar 

  5. J. Florian and V. Hrouda, Spectrochim. Acta, 49A, 921–938 (1993).

    Google Scholar 

  6. M. Szczesniak, M. J. Nowak, H. Rostkowska et al., J. Am. Chem. Soc., 105, 5969–5976 (1983).

    Article  Google Scholar 

  7. M. J. Nowak, L. Lapinski, and J. Fulara, Spectrochim. Acta, 45A, 229–242 (1989).

    Google Scholar 

  8. K. Szczepaniak, M. M. Szczesniak, J. S. Kwiatkowski, K. KuBulat, and W. B. Person, J. Am. Chem. Soc., 110, 8319–8330 (1988).

    Article  Google Scholar 

  9. K. Szczepaniak, M. M. Szczesniak, and W. B. Person, Phys. Chem., 104A, 3852–3863 (2000).

    Google Scholar 

  10. A. Aamouche, M. Ghomi, C. Coulombeau, L. Grajcar, M. H. Baron, H. Jobic, and G. Berthier, J. Phys. Chem., 101A, 1808–1817 (1997).

    Google Scholar 

  11. J. Florian, V. Baumruk, and J. Leszczynski, J. Phys. Chem., 100, 5578–5589 (1996).

    Article  Google Scholar 

  12. K. Szczepaniak and M. Szczepaniak, J. Mol. Struct., 151, 294–302 (1987).

    Google Scholar 

  13. M. Graindourze, Y. Smets, Th. Zeegers-Huyskens, and G. Maes, J. Mol. Struct., 222, 345–359 (1990).

    Article  Google Scholar 

  14. M. J. Novak, L. Lapinski, and J. S. Kwatkowski, Chem. Phys. Lett., 157, 8–14 (1989).

    Google Scholar 

  15. J. S. Kwiatkowski and J. Leszczynski, J. Mol. Struct. Theochem., 208, 35–44 (1990).

    Article  Google Scholar 

  16. M. J. Nowak, H. Rostkowska, L. Lapinski, J. S. Kwiatkowski, and J. Leszczynski, Spectrochim. Acta, 50A, 1081–1094 (1994).

    Google Scholar 

  17. M. J. Nowak, H. Rostkowska, L. Lapinski, J. S. Kwiatkowski, and J. Leszczynski, J. Phys. Chem., 98, 2813–2825 (1994).

    Article  Google Scholar 

  18. Z. Zwierzchowska, K. Dobrosz-Teperek, W. Lewandowski, R. Kolos, K. Bajdor, J. Cz. Dobrowolski, and A. P. Mazurek, J. Mol. Struct., 410-411, 414–420 (1997).

    Google Scholar 

  19. K. Dobrosz-Teperek, Z. Zwierzchowska, W. Lewandowski, K. Bajdor, J. Cz. Dobrowolski, and A. P. Mazurek, J. Mol. Struct., 471, 115–125 (1998).

    Article  Google Scholar 

  20. M. Graindourze, T. Grootaers, J. Smets, Th. Zeegers-Huyskens, and G. Maes, J. Mol. Struct., 237, 389–410 (1990).

    Article  Google Scholar 

  21. G. N. Ten, T. G. Burova, and V. I. Baranov, Zh. Strukt. Khim., 42, 666–676 (2001).

    Google Scholar 

  22. N. K. Sanyal, Indian J. Phys., 52B, 108–115 (1977).

    Google Scholar 

  23. J. N. Rai, Indian J. Phys., 57B, 241–247 (1983).

    Google Scholar 

  24. G. N. Ten, T. G. Burova, and V. I. Baranov, Zh. Prikl. Spektr., 72, 99–105 (2005).

    Google Scholar 

  25. L. M. Sverdlov, M. A. Kovner, and E. P. Krainov, Vibrational Spectra of Polyatomic Molecules [in Russian], Nauka, Moscow (1970).

    Google Scholar 

  26. M. V. Priyutov and T. G. Burova, Opt. i Spektr., 64, 182–185 (1988).

    Google Scholar 

  27. T. G. Burova and M. V. Priyutov, Opt. i Spektr., 71, 66–69 (1991).

    Google Scholar 

  28. M. A. Kovner and M. V. Priyutov, Dokl. Akad. Nauk SSSR, 204, 634–636 (1972).

    Google Scholar 

  29. V. I. Baranov and L. A. Gribov, Opt. i Spektr., 47, 91–99 (1979).

    Google Scholar 

  30. S. Fodor, R. Rava, T. Hays, and T. Spiro, J. Am. Chem. Soc., 107, 1520–1531 (1985).

    Article  Google Scholar 

  31. T. Bourova, G. Ten, S. Andreeva, and V. Berezin, J. Raman Spectr., 31, 827–837 (2000).

    Article  Google Scholar 

  32. T. G. Burova, G. N. Ten, and V. V. Kucherova, Opt. i Spektr., 95, 29–33 (2003).

    Article  Google Scholar 

  33. T. G. Burova, G. N. Ten, and V. V. Kucherova, Opt. i Spektr., 97, 1–4 (2004).

    Article  Google Scholar 

  34. T. G. Burova and K. I. Gur’ev, Spectroscopy and Physics of Molecules. Physics Lecture Problems, Interinstitute Scientific Collection [in Russian], Izdat. SGPI, Saratov (1996), pp. 6–8.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to G. N. Ten.

Additional information

__________

Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 73, No. 4, pp. 437–442, July–August, 2006.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Ten, G.N., Burova, T.G. & Baranov, V.I. Calculation and interpretation of IR and resonant raman spectra of 5-halosubstituted uracils. J Appl Spectrosc 73, 492–498 (2006). https://doi.org/10.1007/s10812-006-0107-z

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10812-006-0107-z

Key words

Navigation