Abstract
We have used valence optical theory to carry out calculation and analysis of in-plane vibrations and intensities of IR spectra for isolated 5-fluorouracil and 5-bromouracil molecules. We give a complete interpretation of the corresponding bands in the absorption spectra. We have carried out a quantum mechanical calculations of the relative intensities in the resonant Raman spectra of 5-fluorouracil and 5-chlorouracil. The calculated spectra for the molecular models obtained agree quantitatively with the experimental spectra, and reproduce the observed characteristic spectral differences in the series of molecules: uracil, 5-fluorouracil, 5-chlorouracil, and 5-bromouracil. The models obtained for the molecules can be used for calculation and analysis of the spectra of other halosubstituted nucleic acid bases.
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References
B. A. Katzung, Basic and Clinical Pharmacology, 6th Ed., Appleton and Lange, Norwalk (1995).
H. O. Kim, J. Med. Chem., 35, 1987–1990 (1992).
N. K. Kochetkov, E. I. Budovskii, E. D. Sverdlov, N. A. Simukova, M. F. Turchinskii, and V. N. Shibaev, Organic Chemistry of Nucleic Acids [in Russian], Khimiya, Moscow (1970).
D. E. Metzler, Biochemistry. The Chemical Reaction of Living Cells, Academic Press, London (1977).
J. Florian and V. Hrouda, Spectrochim. Acta, 49A, 921–938 (1993).
M. Szczesniak, M. J. Nowak, H. Rostkowska et al., J. Am. Chem. Soc., 105, 5969–5976 (1983).
M. J. Nowak, L. Lapinski, and J. Fulara, Spectrochim. Acta, 45A, 229–242 (1989).
K. Szczepaniak, M. M. Szczesniak, J. S. Kwiatkowski, K. KuBulat, and W. B. Person, J. Am. Chem. Soc., 110, 8319–8330 (1988).
K. Szczepaniak, M. M. Szczesniak, and W. B. Person, Phys. Chem., 104A, 3852–3863 (2000).
A. Aamouche, M. Ghomi, C. Coulombeau, L. Grajcar, M. H. Baron, H. Jobic, and G. Berthier, J. Phys. Chem., 101A, 1808–1817 (1997).
J. Florian, V. Baumruk, and J. Leszczynski, J. Phys. Chem., 100, 5578–5589 (1996).
K. Szczepaniak and M. Szczepaniak, J. Mol. Struct., 151, 294–302 (1987).
M. Graindourze, Y. Smets, Th. Zeegers-Huyskens, and G. Maes, J. Mol. Struct., 222, 345–359 (1990).
M. J. Novak, L. Lapinski, and J. S. Kwatkowski, Chem. Phys. Lett., 157, 8–14 (1989).
J. S. Kwiatkowski and J. Leszczynski, J. Mol. Struct. Theochem., 208, 35–44 (1990).
M. J. Nowak, H. Rostkowska, L. Lapinski, J. S. Kwiatkowski, and J. Leszczynski, Spectrochim. Acta, 50A, 1081–1094 (1994).
M. J. Nowak, H. Rostkowska, L. Lapinski, J. S. Kwiatkowski, and J. Leszczynski, J. Phys. Chem., 98, 2813–2825 (1994).
Z. Zwierzchowska, K. Dobrosz-Teperek, W. Lewandowski, R. Kolos, K. Bajdor, J. Cz. Dobrowolski, and A. P. Mazurek, J. Mol. Struct., 410-411, 414–420 (1997).
K. Dobrosz-Teperek, Z. Zwierzchowska, W. Lewandowski, K. Bajdor, J. Cz. Dobrowolski, and A. P. Mazurek, J. Mol. Struct., 471, 115–125 (1998).
M. Graindourze, T. Grootaers, J. Smets, Th. Zeegers-Huyskens, and G. Maes, J. Mol. Struct., 237, 389–410 (1990).
G. N. Ten, T. G. Burova, and V. I. Baranov, Zh. Strukt. Khim., 42, 666–676 (2001).
N. K. Sanyal, Indian J. Phys., 52B, 108–115 (1977).
J. N. Rai, Indian J. Phys., 57B, 241–247 (1983).
G. N. Ten, T. G. Burova, and V. I. Baranov, Zh. Prikl. Spektr., 72, 99–105 (2005).
L. M. Sverdlov, M. A. Kovner, and E. P. Krainov, Vibrational Spectra of Polyatomic Molecules [in Russian], Nauka, Moscow (1970).
M. V. Priyutov and T. G. Burova, Opt. i Spektr., 64, 182–185 (1988).
T. G. Burova and M. V. Priyutov, Opt. i Spektr., 71, 66–69 (1991).
M. A. Kovner and M. V. Priyutov, Dokl. Akad. Nauk SSSR, 204, 634–636 (1972).
V. I. Baranov and L. A. Gribov, Opt. i Spektr., 47, 91–99 (1979).
S. Fodor, R. Rava, T. Hays, and T. Spiro, J. Am. Chem. Soc., 107, 1520–1531 (1985).
T. Bourova, G. Ten, S. Andreeva, and V. Berezin, J. Raman Spectr., 31, 827–837 (2000).
T. G. Burova, G. N. Ten, and V. V. Kucherova, Opt. i Spektr., 95, 29–33 (2003).
T. G. Burova, G. N. Ten, and V. V. Kucherova, Opt. i Spektr., 97, 1–4 (2004).
T. G. Burova and K. I. Gur’ev, Spectroscopy and Physics of Molecules. Physics Lecture Problems, Interinstitute Scientific Collection [in Russian], Izdat. SGPI, Saratov (1996), pp. 6–8.
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Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 73, No. 4, pp. 437–442, July–August, 2006.
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Ten, G.N., Burova, T.G. & Baranov, V.I. Calculation and interpretation of IR and resonant raman spectra of 5-halosubstituted uracils. J Appl Spectrosc 73, 492–498 (2006). https://doi.org/10.1007/s10812-006-0107-z
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DOI: https://doi.org/10.1007/s10812-006-0107-z